Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGAAAAACGGGTTGTGGGGTTATTTTGGTTTTGGGAATTGTGTTGAGCGTGTACTTGGTTTTGGTTGAGGGGGCCATGAGTTTCGAGAGAAGTGAGAGCGCTGCTCAATCGAATGAATTGTTTGAGGTGGATCATCATGCAAGTGGAAGAAATGTTACTGTTGGCGGCGGCGGCGGCGGTGGAGGCCATTGGAGTGGGGAAAGAAAGAAAGATACAAAACATAATAAAAAACATGAAAAAGGCGGAGGTGGCGGCGGAGGCGGTGGAGGAGGCGGAGACGGCAAGGGCGGCGGTGGCGGAGGCGGTTTTGGCGGAGGAGGAAGTAGAGGTTTTTGCTGGATTTGGGGATGCGGCGGCGGCGGTCACGGCAAAGGACTAACCGGAAAGGGAGGCCCCTCAAAC mRNA sequence
ATGGAGAGAAAAACGGGTTGTGGGGTTATTTTGGTTTTGGGAATTGTGTTGAGCGTGTACTTGGTTTTGGTTGAGGGGGCCATGAGTTTCGAGAGAAGTGAGAGCGCTGCTCAATCGAATGAATTGTTTGAGGTGGATCATCATGCAAGTGGAAGAAATGTTACTGTTGGCGGCGGCGGCGGCGGTGGAGGCCATTGGAGTGGGGAAAGAAAGAAAGATACAAAACATAATAAAAAACATGAAAAAGGCGGAGGTGGCGGCGGAGGCGGTGGAGGAGGCGGAGACGGCAAGGGCGGCGGTGGCGGAGGCGGTTTTGGCGGAGGAGGAAGTAGAGGTTTTTGCTGGATTTGGGGATGCGGCGGCGGCGGTCACGGCAAAGGACTAACCGGAAAGGGAGGCCCCTCAAAC Coding sequence (CDS)
ATGGAGAGAAAAACGGGTTGTGGGGTTATTTTGGTTTTGGGAATTGTGTTGAGCGTGTACTTGGTTTTGGTTGAGGGGGCCATGAGTTTCGAGAGAAGTGAGAGCGCTGCTCAATCGAATGAATTGTTTGAGGTGGATCATCATGCAAGTGGAAGAAATGTTACTGTTGGCGGCGGCGGCGGCGGTGGAGGCCATTGGAGTGGGGAAAGAAAGAAAGATACAAAACATAATAAAAAACATGAAAAAGGCGGAGGTGGCGGCGGAGGCGGTGGAGGAGGCGGAGACGGCAAGGGCGGCGGTGGCGGAGGCGGTTTTGGCGGAGGAGGAAGTAGAGGTTTTTGCTGGATTTGGGGATGCGGCGGCGGCGGTCACGGCAAAGGACTAACCGGAAAGGGAGGCCCCTCAAAC Protein sequence
MERKTGCGVILVLGIVLSVYLVLVEGAMSFERSESAAQSNELFEVDHHASGRNVTVGGGGGGGGHWSGERKKDTKHNKKHEKGGGGGGGGGGGGDGKGGGGGGGFGGGGSRGFCWIWGCGGGGHGKGLTGKGGPSN
Homology
BLAST of MS010581 vs. NCBI nr
Match:
KAG6603927.1 (hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 88.2 bits (217), Expect = 6.0e-14
Identity = 95/213 (44.60%), Postives = 101/213 (47.42%), Query Frame = 0
Query: 1 MERKTGCGVILVLGIVLSVYLVLVEGAMSFERSESAAQSNELFEVDHH------ASGRNV 60 MER GCGV+LV+GIVLS+Y LVEG FERS SNE ++D SGRN Sbjct: 39 MERGRGCGVLLVVGIVLSLY--LVEGVKGFERSGRVGASNEWSKLDGRPFEGVGVSGRNA 98 Query: 61 TV----------------------GGGGGGGGHWSGE------RKKDTKHNKKHEK---- 120 TV GGGGGGGG GE RKKDTKH+KKH K Sbjct: 99 TVNGGRDSVKRGITNGGGGGGGGGGGGGGGGGGAGGEGSGVGVRKKDTKHSKKHGKGGNG 158 Query: 121 --------------------------------GGGGGGGGGGGGDGKGGGGGG------- 135 GGGGGGGGGGGG G GGGGGG Sbjct: 159 GGGGGGGGGGKGYGWGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSGGGGGGGGGGSGG 218
BLAST of MS010581 vs. NCBI nr
Match:
XP_022977280.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])
HSP 1 Score: 78.2 bits (191), Expect = 6.2e-11
Identity = 87/176 (49.43%), Postives = 93/176 (52.84%), Query Frame = 0
Query: 1 MERKTGCGVILVLGIVLSVYLVLVEGAMSFERSESAAQSNELFEVDHH------ASGRNV 60 MER CGV+LV+GIVLS L LVEG FERS S SNE E+D SGRN Sbjct: 1 MERGRVCGVLLVVGIVLS--LSLVEGLKGFERSGSVDTSNEWSELDGSLFGGVGVSGRNA 60 Query: 61 TV---------------------GGGGGGGGHWSG-----------ERKKD--TKHNKKH 120 TV GGGGGGGG SG E+ D ++ Sbjct: 61 TVNGGSDSVKRGITNGGGGGGGGGGGGGGGGEGSGVGAEVAAVGEVEKAMDGEVAEGEEG 120 Query: 121 EKGGGGGGGGGGGGDGKGGGGGG--GFGGGGSRGFCWIWGCGGGGHGKGLTGKGGP 135 E GGGGGGGGGGGG G GGG GG GFGGGGSR FCWIWGCGGG K K GP Sbjct: 121 EXGGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPRKEGP 174
BLAST of MS010581 vs. NCBI nr
Match:
XP_038882243.1 (glycine-rich protein DOT1-like [Benincasa hispida])
HSP 1 Score: 62.4 bits (150), Expect = 3.5e-06
Identity = 74/154 (48.05%), Postives = 84/154 (54.55%), Query Frame = 0
Query: 1 MERKTGCGVILVLGIVL-SVYLVLVEG--AMSFERSES-AAQSNELFEVDHH-----ASG 60 M R+ G GV+L++GIVL S+YLV VEG +FE SE+ SN+ D +G Sbjct: 1 MLRERGFGVLLIIGIVLISIYLVEVEGKEVKAFETSENLGTTSNQWSNSDESLYGVGLTG 60 Query: 61 RNVTVGGG---------GGGGGHWSGERKKDTKHNKKHEK---------------GGGGG 120 RNVTV GG G GGG G RKKD KHNKKH+ GGGGG Sbjct: 61 RNVTVSGGKGGGNSSGEGHGGGGGGGVRKKDVKHNKKHKNKQKRAGEAAEAAMAVGGGGG 120 Query: 121 GGGGGGGDGKGGGGGGGFGGGGSRGFCWIWGCGG 122 G GGGGG G G GGGGG GGG RG W G GG Sbjct: 121 GNGGGGGGGGGSGGGGGGGGGNGRGLGWGEGSGG 154
BLAST of MS010581 vs. ExPASy TrEMBL
Match:
A0A6J1ILV4 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111477646 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 87/176 (49.43%), Postives = 93/176 (52.84%), Query Frame = 0
Query: 1 MERKTGCGVILVLGIVLSVYLVLVEGAMSFERSESAAQSNELFEVDHH------ASGRNV 60 MER CGV+LV+GIVLS L LVEG FERS S SNE E+D SGRN Sbjct: 1 MERGRVCGVLLVVGIVLS--LSLVEGLKGFERSGSVDTSNEWSELDGSLFGGVGVSGRNA 60 Query: 61 TV---------------------GGGGGGGGHWSG-----------ERKKD--TKHNKKH 120 TV GGGGGGGG SG E+ D ++ Sbjct: 61 TVNGGSDSVKRGITNGGGGGGGGGGGGGGGGEGSGVGAEVAAVGEVEKAMDGEVAEGEEG 120 Query: 121 EKGGGGGGGGGGGGDGKGGGGGG--GFGGGGSRGFCWIWGCGGGGHGKGLTGKGGP 135 E GGGGGGGGGGGG G GGG GG GFGGGGSR FCWIWGCGGG K K GP Sbjct: 121 EXGGGGGGGGGGGGGGGGGGSGGGWGFGGGGSRSFCWIWGCGGGDGRKAGPRKEGP 174
BLAST of MS010581 vs. ExPASy TrEMBL
Match:
A0A0A0KGL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504700 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 8.1e-09
Identity = 77/149 (51.68%), Postives = 92/149 (61.74%), Query Frame = 0
Query: 1 MERKTGCGVILVLGIVL-SVYLVLVEGAMSFERSES-AAQSNELFEVDHHASGRNVTV-- 60 M+ + G GV+L LGIVL S+YLV + SF+ +ES + SN +++ GRN+T+ Sbjct: 1 MKSERGSGVLLFLGIVLISIYLVEGKEVKSFKINESVGSTSNGWSDLNESLRGRNMTISG 60 Query: 61 ------------GGGGGGGGHWSGERKKDTKHNKKHEKGGGGGGGGGGGGDGKGGGGGGG 120 GGGGGGGG G RKKDTKHNKKH K G GGGGGGGGG+G GGGGGG Sbjct: 61 GKGGRNSSGEGHGGGGGGGGSDVGVRKKDTKHNKKHGKSGNGGGGGGGGGNGGGGGGGGA 120 Query: 121 FGGGGSRGFCWIWGCGGGGHGKGLTGKGG 134 GGGG G GGGG+GKG G GG Sbjct: 121 GGGGG--------GGGGGGNGKGY-GWGG 140
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAG6603927.1 6.0e-14 44.60 hypothetical protein SDJN03_04536, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022977280.1 6.2e-11 49.43 putative glycine-rich cell wall structural protein 1 [Cucurbita maxima] [more]
XP_038882243.1 3.5e-06 48.05 glycine-rich protein DOT1-like [Benincasa hispida] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A6J1ILV4 3.0e-11 49.43 putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... [more]
A0A0A0KGL8 8.1e-09 51.68 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504700 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
A T G G A G A G A A A A A C G G G T T G T G G G G T T A T T T T G G T T T T G G G A A T T G T G T T G A G C G T G T A C T T G G T T T T G G T T G A G G G G G C C A T G A G T T T C G A G A G A A G T G A G A G C G C T G C T C A A T C G A A T G A A T T G T T T G A G G T G G A T C A T C A T G C A A G T G G A A G A A A T G T T A C T G T T G G C G G C G G C G G C G G C G G T G G A G G C C A T T G G A G T G G G G A A A G A A A G A A A G A T A C A A A A C A T A A T A A A A A A C A T G A A A A A G G C G G A G G T G G C G G C G G A G G C G G T G G A G G A G G C G G A G A C G G C A A G G G C G G C G G T G G C G G A G G C G G T T T T G G C G G A G G A G G A A G T A G A G G T T T T T G C T G G A T T T G G G G A T G C G G C G G C G G C G G T C A C G G C A A A G G A C T A A C C G G A A A G G G A G G C C C C T C A A A C 50 100 150 200 250 300 350 400 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 47..103
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS010581.1 MS010581.1 mRNA