
MS010549 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCAAACATTTACGATGCCAAAGGAAAGTGGAGGGAAACGGCAAATATAAGAATGTTAATGAAATCAAAGGGGGTGGTGAAGGAGCCAGGATGGTCTTCAATAAAGGTTAAGGATAGCATTTTTTGCGTTTGTTGTTAGATATCAGTCTCATCCACAAGGAGAAGACATATATAGTATGTCAGAGTTGTTGGCTTCGGGA GCAAACATTTACGATGCCAAAGGAAAGTGGAGGGAAACGGCAAATATAAGAATGTTAATGAAATCAAAGGGGGTGGTGAAGGAGCCAGGATGGTCTTCAATAAAGGTTAAGGATAGCATTGCGTTTGTTGTTAGATATCAGTCTCATCCACAAGGAGAAGACATATATAGTATGTCAGAGTTGTTGGCTTCGGGA GCAAACATTTACGATGCCAAAGGAAAGTGGAGGGAAACGGCAAATATAAGAATGTTAATGAAATCAAAGGGGGTGGTGAAGGAGCCAGGATGGTCTTCAATAAAGGTTAAGGATAGCATTGCGTTTGTTGTTAGATATCAGTCTCATCCACAAGGAGAAGACATATATAGTATGTCAGAGTTGTTGGCTTCGGGA ANIYDAKGKWRETANIRMLMKSKGVVKEPGWSSIKVKDSIAFVVRYQSHPQGEDIYSMSELLASG Homology
BLAST of MS010549 vs. NCBI nr
Match: XP_022157247.1 (putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia] >XP_022157248.1 putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia] >XP_022157249.1 putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia] >XP_022157250.1 putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia] >XP_022157251.1 putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia] >XP_022157252.1 putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia] >XP_022157253.1 putative pentatricopeptide repeat-containing protein At3g47840 [Momordica charantia]) HSP 1 Score: 106.7 bits (265), Expect = 7.7e-20 Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0
BLAST of MS010549 vs. NCBI nr
Match: XP_038887347.1 (putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida] >XP_038887348.1 putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida] >XP_038887349.1 putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida] >XP_038887350.1 putative pentatricopeptide repeat-containing protein At3g47840 [Benincasa hispida]) HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19 Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0
BLAST of MS010549 vs. NCBI nr
Match: XP_004142727.1 (putative pentatricopeptide repeat-containing protein At3g47840 [Cucumis sativus] >XP_011653730.1 putative pentatricopeptide repeat-containing protein At3g47840 [Cucumis sativus] >XP_031740494.1 putative pentatricopeptide repeat-containing protein At3g47840 [Cucumis sativus] >XP_031740495.1 putative pentatricopeptide repeat-containing protein At3g47840 [Cucumis sativus] >KGN54465.1 hypothetical protein Csa_012903 [Cucumis sativus]) HSP 1 Score: 104.0 bits (258), Expect = 5.0e-19 Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 0
BLAST of MS010549 vs. NCBI nr
Match: XP_022978431.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 [Cucurbita maxima]) HSP 1 Score: 100.1 bits (248), Expect = 7.2e-18 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 0
BLAST of MS010549 vs. NCBI nr
Match: XP_022978429.1 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 [Cucurbita maxima]) HSP 1 Score: 100.1 bits (248), Expect = 7.2e-18 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 0
BLAST of MS010549 vs. ExPASy Swiss-Prot
Match: Q9STS9 (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E43 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 6.0e-15 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0
BLAST of MS010549 vs. ExPASy Swiss-Prot
Match: P0C899 (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08 Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0
BLAST of MS010549 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 7.8e-07 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of MS010549 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.0e-06 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of MS010549 vs. ExPASy Swiss-Prot
Match: Q9LW32 (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06 Identity = 21/57 (36.84%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of MS010549 vs. ExPASy TrEMBL
Match: A0A6J1DSK9 (putative pentatricopeptide repeat-containing protein At3g47840 OS=Momordica charantia OX=3673 GN=LOC111024006 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20 Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0
BLAST of MS010549 vs. ExPASy TrEMBL
Match: A0A0A0KXW2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G335250 PE=4 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 2.4e-19 Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 0
BLAST of MS010549 vs. ExPASy TrEMBL
Match: A0A6J1IMM7 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478417 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 0
BLAST of MS010549 vs. ExPASy TrEMBL
Match: A0A6J1IU19 (putative pentatricopeptide repeat-containing protein At3g47840 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478417 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18 Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 0
BLAST of MS010549 vs. ExPASy TrEMBL
Match: A0A1S4DWM7 (putative pentatricopeptide repeat-containing protein At3g47840 OS=Cucumis melo OX=3656 GN=LOC103489816 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17 Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0
BLAST of MS010549 vs. TAIR 10
Match: AT3G47840.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 80.9 bits (198), Expect = 4.2e-16 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0
BLAST of MS010549 vs. TAIR 10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 7.7e-10 Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0
BLAST of MS010549 vs. TAIR 10
Match: AT2G35030.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 53.9 bits (128), Expect = 5.5e-08 Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0
BLAST of MS010549 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 53.5 bits (127), Expect = 7.2e-08 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of MS010549 vs. TAIR 10
Match: AT3G26782.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 53.1 bits (126), Expect = 9.5e-08 Identity = 21/57 (36.84%), Postives = 39/57 (68.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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