MS010546 (gene) Bitter gourd (TR) v1

Overview
NameMS010546
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxilin-like protein 1 isoform X4
Locationscaffold35: 445200 .. 445550 (+)
RNA-Seq ExpressionMS010546
SyntenyMS010546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAGCTTTGAGTACACGGAGGTGTCCTCACAGGTACGAGCGACTCGGGGAGGATCCTACCATTAGCCTGTTGGAAGGGCGGCTGAAGAGGGCAACCAGTTTGCCGACCCGAGTACTCGGTTCTGCATCAAGGAAGTCGCCTCTAGAGATTGTATTTGCTGAGACTGCTCAAGTGAAACACAGGCAGTCGAAGAAAGCTAGCAGAGGACACCCTCTGTTTAGTTTCTTTGATTTTCGCCGCAAGAGGAAGACGACGGCGAAGCCTGAATTTGCAAGGTATCTAGAGTATGTGAAGGAGGGAGGGCTGTGGGATTTGAAGGCAAATGCTCCTGTAATTTACTATAAA

mRNA sequence

ATGTTGAGAGCTTTGAGTACACGGAGGTGTCCTCACAGGTACGAGCGACTCGGGGAGGATCCTACCATTAGCCTGTTGGAAGGGCGGCTGAAGAGGGCAACCAGTTTGCCGACCCGAGTACTCGGTTCTGCATCAAGGAAGTCGCCTCTAGAGATTGTATTTGCTGAGACTGCTCAAGTGAAACACAGGCAGTCGAAGAAAGCTAGCAGAGGACACCCTCTGTTTAGTTTCTTTGATTTTCGCCGCAAGAGGAAGACGACGGCGAAGCCTGAATTTGCAAGGTATCTAGAGTATGTGAAGGAGGGAGGGCTGTGGGATTTGAAGGCAAATGCTCCTGTAATTTACTATAAA

Coding sequence (CDS)

ATGTTGAGAGCTTTGAGTACACGGAGGTGTCCTCACAGGTACGAGCGACTCGGGGAGGATCCTACCATTAGCCTGTTGGAAGGGCGGCTGAAGAGGGCAACCAGTTTGCCGACCCGAGTACTCGGTTCTGCATCAAGGAAGTCGCCTCTAGAGATTGTATTTGCTGAGACTGCTCAAGTGAAACACAGGCAGTCGAAGAAAGCTAGCAGAGGACACCCTCTGTTTAGTTTCTTTGATTTTCGCCGCAAGAGGAAGACGACGGCGAAGCCTGAATTTGCAAGGTATCTAGAGTATGTGAAGGAGGGAGGGCTGTGGGATTTGAAGGCAAATGCTCCTGTAATTTACTATAAA

Protein sequence

MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQVKHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Homology
BLAST of MS010546 vs. NCBI nr
Match: XP_022132575.1 (uncharacterized protein LOC111005403 [Momordica charantia])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60

Query: 61  KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 61  KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 117

BLAST of MS010546 vs. NCBI nr
Match: XP_038883128.1 (uncharacterized protein LOC120074173 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 99/118 (83.90%), Postives = 108/118 (91.53%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYERLGEDPT+SLLEGRLKRATSLPTRVLGS SRK   EI+F E AQ 
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTVSLLEGRLKRATSLPTRVLGSGSRKPTSEIIFPEFAQA 60

Query: 61  KHRQSKKASR-GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
             +QSKKA++ GHPLFSFFDFRRKRK+TA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  NQKQSKKANKGGHPLFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of MS010546 vs. NCBI nr
Match: XP_011658493.1 (uncharacterized protein LOC105436031 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 5.6e-45
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYE   EDPT+SLLEGRLKRATSLPT VLGS SRK   +I F E AQ 
Sbjct: 1   MLRALSTRRCPHRYEFFAEDPTLSLLEGRLKRATSLPTIVLGSGSRKPAFDITFPEFAQA 60

Query: 61  KHRQSKKASR-GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           K +QSKKA++ GHP+FSFFDFRRKRK+TA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of MS010546 vs. NCBI nr
Match: XP_008440743.1 (PREDICTED: uncharacterized protein LOC103485064 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 6.2e-44
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRY+ L EDPTISLLEG+L+RATSLPT VLGS SRKS  +I   E AQ 
Sbjct: 1   MLRALSTRRCPHRYKFLAEDPTISLLEGKLRRATSLPTIVLGSGSRKSAFDITVPEFAQA 60

Query: 61  KHRQSKKASR-GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           K +QSK+A++ GHP+FSFFDFRRKRK+TA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKRANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of MS010546 vs. NCBI nr
Match: XP_022978577.1 (uncharacterized protein LOC111478516 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 4.0e-43
Identity = 96/119 (80.67%), Postives = 103/119 (86.55%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYERLGEDPTISLLE +LKRATSLPTRVLGS S K   E +    AQV
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEVKLKRATSLPTRVLGSGSVKPISETI----AQV 60

Query: 61  KHRQSKKASR--GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           K +QSKK +   GHPLFSFFDFRRKRK+TAKPEFARY+EYVKEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKGNNKGGHPLFSFFDFRRKRKSTAKPEFARYVEYVKEGGLWDLKANAPVIYFK 115

BLAST of MS010546 vs. ExPASy TrEMBL
Match: A0A6J1BSU6 (uncharacterized protein LOC111005403 OS=Momordica charantia OX=3673 GN=LOC111005403 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.4e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60

Query: 61  KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK
Sbjct: 61  KHRQSKKASRGHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 117

BLAST of MS010546 vs. ExPASy TrEMBL
Match: A0A0A0KKF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502830 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYE   EDPT+SLLEGRLKRATSLPT VLGS SRK   +I F E AQ 
Sbjct: 1   MLRALSTRRCPHRYEFFAEDPTLSLLEGRLKRATSLPTIVLGSGSRKPAFDITFPEFAQA 60

Query: 61  KHRQSKKASR-GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           K +QSKKA++ GHP+FSFFDFRRKRK+TA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of MS010546 vs. ExPASy TrEMBL
Match: A0A1S3B2K9 (uncharacterized protein LOC103485064 OS=Cucumis melo OX=3656 GN=LOC103485064 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-44
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRY+ L EDPTISLLEG+L+RATSLPT VLGS SRKS  +I   E AQ 
Sbjct: 1   MLRALSTRRCPHRYKFLAEDPTISLLEGKLRRATSLPTIVLGSGSRKSAFDITVPEFAQA 60

Query: 61  KHRQSKKASR-GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           K +QSK+A++ GHP+FSFFDFRRKRK+TA+PEFARYLEY+KEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKRANKGGHPIFSFFDFRRKRKSTARPEFARYLEYLKEGGLWDLKANAPVIYFK 118

BLAST of MS010546 vs. ExPASy TrEMBL
Match: A0A6J1ILF9 (uncharacterized protein LOC111478516 OS=Cucurbita maxima OX=3661 GN=LOC111478516 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 96/119 (80.67%), Postives = 103/119 (86.55%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYERLGEDPTISLLE +LKRATSLPTRVLGS S K   E +    AQV
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEVKLKRATSLPTRVLGSGSVKPISETI----AQV 60

Query: 61  KHRQSKKASR--GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           K +QSKK +   GHPLFSFFDFRRKRK+TAKPEFARY+EYVKEGGLWDLKANAPVIY+K
Sbjct: 61  KQKQSKKGNNKGGHPLFSFFDFRRKRKSTAKPEFARYVEYVKEGGLWDLKANAPVIYFK 115

BLAST of MS010546 vs. ExPASy TrEMBL
Match: A0A6J1GER2 (uncharacterized protein LOC111453296 OS=Cucurbita moschata OX=3662 GN=LOC111453296 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-42
Identity = 94/119 (78.99%), Postives = 102/119 (85.71%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           MLRALSTRRCPHRYERLGEDPTISLLE +LKRATSLPTRVLGS S K   E +    AQV
Sbjct: 1   MLRALSTRRCPHRYERLGEDPTISLLEVKLKRATSLPTRVLGSGSVKPISETI----AQV 60

Query: 61  KHRQSKKASR--GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           K +QSKK +   GHPLFSFF FRRKRK+TAKPEFARY+EYVKEGG+WDLKANAPVIY+K
Sbjct: 61  KQKQSKKGNNKGGHPLFSFFAFRRKRKSTAKPEFARYVEYVKEGGVWDLKANAPVIYFK 115

BLAST of MS010546 vs. TAIR 10
Match: AT4G36500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18210.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-23
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 0

Query: 1   MLRALSTRRCPHR--YERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETA 60
           MLR+LSTR    R  YER+ +D T SLL  +L+R+TS+P            +  +  E  
Sbjct: 3   MLRSLSTRTRSRRGGYERVSDDSTFSLLGAKLRRSTSVPYYAPSIKLGAGGVPTILEELP 62

Query: 61  QVKHRQSKKASR-GHPLFSFFDFRRKRKTTAKPEFARYLEYVKEGGLWDLKANAPVIYYK 118
           + K ++ K   +  HP+FS F  ++K+ TT KPEF+RYLEY+KEGG+WD +ANAPVIYYK
Sbjct: 63  RQKSKKVKPTGKFSHPIFSLFYGKKKKSTTTKPEFSRYLEYLKEGGMWDARANAPVIYYK 122

BLAST of MS010546 vs. TAIR 10
Match: AT3G50900.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-20
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETAQV 60
           M RA+STR+    YE+LG++      E RLKR +S+P  V G +  ++P++       +V
Sbjct: 1   MFRAMSTRKIHGGYEKLGDE------EARLKRVSSVPASVYGHS--RNPVQ-------EV 60

Query: 61  KHRQSKKASRG--HPLFSFFD--FRRKRK--------TTAKPEFARYLEYVKEGGLWDLK 118
           K   + K + G  HPLFSFFD  F+RK+K         TAKPEFARY+EYV+EGG+WD  
Sbjct: 61  KKTPTAKPTGGSVHPLFSFFDVHFQRKKKNTAKKKSLATAKPEFARYMEYVREGGVWDPS 114

BLAST of MS010546 vs. TAIR 10
Match: AT2G18210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G36500.1); Has 50 Blast hits to 50 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-20
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = 0

Query: 1   MLRALSTRRCPHR--YERLGEDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETA 60
           MLR LSTR    R  YER+ +D T SLL  +L+R+TS+P     S        ++  +  
Sbjct: 3   MLRNLSTRTRSRRGGYERVSDDSTFSLLGAKLRRSTSVP-YYAPSIRLGGDFPVILEKLP 62

Query: 61  QVKHRQSKKASR-GHPLFSFFD-FRR--KRKTTAKPEFARYLEYVKEGGLWDLKANAPVI 118
           + K  ++   S+  HP+FS FD +RR  K+K TAKPEF+RY EY+KE G+WDL++N+PVI
Sbjct: 63  RQKPTKTVVTSKLSHPIFSLFDGYRRHNKKKATAKPEFSRYHEYLKESGMWDLRSNSPVI 122

BLAST of MS010546 vs. TAIR 10
Match: AT5G66490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-18
Identity = 55/125 (44.00%), Postives = 69/125 (55.20%), Query Frame = 0

Query: 1   MLRALSTRRCPHRYERLG--EDPTISLLEGRLKRATSLPTRVLGSASRKSPLEIVFAETA 60
           M+RALSTR+    Y++LG  E+    LLE    +  S+PT   G             ++ 
Sbjct: 1   MIRALSTRKVRGSYKKLGDEEEAGAGLLE---VKPESVPTNPHG-------------QSP 60

Query: 61  QVKHRQSKKASRGHPLFSFFDFRRKRK------TTAKPEFARYLEYVKEGGLWDLKANAP 118
           +V     K     HPLFSFF+   KRK      TTAKPEFARYLEYVKEGG+WD  +N P
Sbjct: 61  KVNKPVEKTRGSAHPLFSFFEMSLKRKKKKKSTTTAKPEFARYLEYVKEGGVWDNTSNGP 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132575.11.5e-58100.00uncharacterized protein LOC111005403 [Momordica charantia][more]
XP_038883128.13.2e-4883.90uncharacterized protein LOC120074173 [Benincasa hispida][more]
XP_011658493.15.6e-4579.66uncharacterized protein LOC105436031 [Cucumis sativus][more]
XP_008440743.16.2e-4477.97PREDICTED: uncharacterized protein LOC103485064 [Cucumis melo][more]
XP_022978577.14.0e-4380.67uncharacterized protein LOC111478516 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BSU67.4e-59100.00uncharacterized protein LOC111005403 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A0A0KKF42.7e-4579.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502830 PE=4 SV=1[more]
A0A1S3B2K93.0e-4477.97uncharacterized protein LOC103485064 OS=Cucumis melo OX=3656 GN=LOC103485064 PE=... [more]
A0A6J1ILF91.9e-4380.67uncharacterized protein LOC111478516 OS=Cucurbita maxima OX=3661 GN=LOC111478516... [more]
A0A6J1GER23.7e-4278.99uncharacterized protein LOC111453296 OS=Cucurbita moschata OX=3662 GN=LOC1114532... [more]
Match NameE-valueIdentityDescription
AT4G36500.11.7e-2346.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G50900.11.3e-2045.74unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G18210.16.7e-2045.53unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G66490.18.1e-1844.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35291PROTEIN SHROOM-LIKEcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010546.1MS010546.1mRNA