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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. TTCCAAGGACTCAAGGTAGCTGCTGGATTTTTTGTCAGAATAATTCTAACCATTGCTGGATCCTTCTACAGCATTTCAAAGTTGAATCTTAAACGACACAATGTG mRNA sequence TTCCAAGGACTCAAGGTAGCTGCTGGATTTTTTGTCAGAATAATTCTAACCATTGCTGGATCCTTCTACAGCATTTCAAAGTTGAATCTTAAACGACACAATGTG Coding sequence (CDS) TTCCAAGGACTCAAGGTAGCTGCTGGATTTTTTGTCAGAATAATTCTAACCATTGCTGGATCCTTCTACAGCATTTCAAAGTTGAATCTTAAACGACACAATGTG Protein sequence FQGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV
Homology
BLAST of MS010533 vs. NCBI nr
Match: XP_022152358.1 (nucleolar protein 6 [Momordica charantia]) HSP 1 Score: 56.6 bits (135), Expect = 4.9e-05 Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 2 QGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
+GLKVA GFFVRII TIAGSF+SISKLN+KR+N+
Sbjct: 164 EGLKVAPGFFVRIIPTIAGSFFSISKLNIKRNNI 197
BLAST of MS010533 vs. NCBI nr
Match: XP_038874530.1 (nucleolar protein 6 [Benincasa hispida] >XP_038874531.1 nucleolar protein 6 [Benincasa hispida] >XP_038874532.1 nucleolar protein 6 [Benincasa hispida]) HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04 Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0
Query: 1 FQGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
F+ LKVA GFF+RII TIA SF+SISKLNLKR+N+
Sbjct: 163 FEELKVAPGFFIRIIPTIAASFFSISKLNLKRNNI 197
BLAST of MS010533 vs. ExPASy TrEMBL
Match: A0A6J1DEN5 (nucleolar protein 6 OS=Momordica charantia OX=3673 GN=LOC111020101 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.4e-05 Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 2 QGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
+GLKVA GFFVRII TIAGSF+SISKLN+KR+N+
Sbjct: 164 EGLKVAPGFFVRIIPTIAGSFFSISKLNIKRNNI 197
BLAST of MS010533 vs. ExPASy TrEMBL
Match: A0A6J1IT25 (nucleolar protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 7.7e-04 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0
Query: 4 LKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
LKVA GFFVRII TIA SF+SISKLNLKR+N+
Sbjct: 28 LKVAPGFFVRIIPTIAASFFSISKLNLKRNNI 59
BLAST of MS010533 vs. ExPASy TrEMBL
Match: A0A6J1IL20 (nucleolar protein 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 7.7e-04 Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0
Query: 4 LKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
LKVA GFFVRII TIA SF+SISKLNLKR+N+
Sbjct: 166 LKVAPGFFVRIIPTIAASFFSISKLNLKRNNI 197
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| XP_022152358.1 | 4.9e-05 | 79.41 | nucleolar protein 6 [Momordica charantia] | [more] |
| XP_038874530.1 | 3.2e-04 | 74.29 | nucleolar protein 6 [Benincasa hispida] >XP_038874531.1 nucleolar protein 6 [Ben... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DEN5 | 2.4e-05 | 79.41 | nucleolar protein 6 OS=Momordica charantia OX=3673 GN=LOC111020101 PE=3 SV=1 | [more] |
| A0A6J1IT25 | 7.7e-04 | 81.25 | nucleolar protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 ... | [more] |
| A0A6J1IL20 | 7.7e-04 | 81.25 | nucleolar protein 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 ... | [more] |
| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
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| MS010533.1 | MS010533.1 | mRNA |
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