MS010533 (gene) Bitter gourd (TR) v1

Overview
NameMS010533
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnucleolar protein 6
Locationscaffold35: 367041 .. 367145 (-)
RNA-Seq ExpressionMS010533
SyntenyMS010533
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCAAGGACTCAAGGTAGCTGCTGGATTTTTTGTCAGAATAATTCTAACCATTGCTGGATCCTTCTACAGCATTTCAAAGTTGAATCTTAAACGACACAATGTG

mRNA sequence

TTCCAAGGACTCAAGGTAGCTGCTGGATTTTTTGTCAGAATAATTCTAACCATTGCTGGATCCTTCTACAGCATTTCAAAGTTGAATCTTAAACGACACAATGTG

Coding sequence (CDS)

TTCCAAGGACTCAAGGTAGCTGCTGGATTTTTTGTCAGAATAATTCTAACCATTGCTGGATCCTTCTACAGCATTTCAAAGTTGAATCTTAAACGACACAATGTG

Protein sequence

FQGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV
Homology
[Close]
BLAST of MS010533 vs. NCBI nr
Match: XP_022152358.1 (nucleolar protein 6 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 4.9e-05
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 2   QGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
           +GLKVA GFFVRII TIAGSF+SISKLN+KR+N+
Sbjct: 164 EGLKVAPGFFVRIIPTIAGSFFSISKLNIKRNNI 197

[Close]
BLAST of MS010533 vs. NCBI nr
Match: XP_038874530.1 (nucleolar protein 6 [Benincasa hispida] >XP_038874531.1 nucleolar protein 6 [Benincasa hispida] >XP_038874532.1 nucleolar protein 6 [Benincasa hispida])

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   FQGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
           F+ LKVA GFF+RII TIA SF+SISKLNLKR+N+
Sbjct: 163 FEELKVAPGFFIRIIPTIAASFFSISKLNLKRNNI 197

[Close]
BLAST of MS010533 vs. ExPASy TrEMBL
Match: A0A6J1DEN5 (nucleolar protein 6 OS=Momordica charantia OX=3673 GN=LOC111020101 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-05
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 2   QGLKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
           +GLKVA GFFVRII TIAGSF+SISKLN+KR+N+
Sbjct: 164 EGLKVAPGFFVRIIPTIAGSFFSISKLNIKRNNI 197

[Close]
BLAST of MS010533 vs. ExPASy TrEMBL
Match: A0A6J1IT25 (nucleolar protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.7e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 4  LKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
          LKVA GFFVRII TIA SF+SISKLNLKR+N+
Sbjct: 28 LKVAPGFFVRIIPTIAASFFSISKLNLKRNNI 59

[Close]
BLAST of MS010533 vs. ExPASy TrEMBL
Match: A0A6J1IL20 (nucleolar protein 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.7e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 4   LKVAAGFFVRIILTIAGSFYSISKLNLKRHNV 36
           LKVA GFFVRII TIA SF+SISKLNLKR+N+
Sbjct: 166 LKVAPGFFVRIIPTIAASFFSISKLNLKRNNI 197

The following BLAST results are available for this feature:
BLAST of MS010533 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152358.14.9e-0579.41nucleolar protein 6 [Momordica charantia][more]
XP_038874530.13.2e-0474.29nucleolar protein 6 [Benincasa hispida] >XP_038874531.1 nucleolar protein 6 [Ben... [more]
BLAST of MS010533 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS010533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DEN52.4e-0579.41nucleolar protein 6 OS=Momordica charantia OX=3673 GN=LOC111020101 PE=3 SV=1[more]
A0A6J1IT257.7e-0481.25nucleolar protein 6 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 ... [more]
A0A6J1IL207.7e-0481.25nucleolar protein 6 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478411 PE=3 ... [more]
BLAST of MS010533 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010533.1MS010533.1mRNA