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MS010493 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACTTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACGGAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGGTCGCCGGCTACCACAGGCTGCGGGACCGCGTGGAGTACGATGGCAGCGACGAG TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACTTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACGGAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGGTCGCCGGCTACCACAGGCTGCGGGACCGCGTGGAGTACGATGGCAGCGACGAG TTGATCGAGGAGAGGAATCCGACGATTCGATTCTCCAATAAGCTAACTTCGAGTCCCGCCGATCAGTGCGCCGTTTGCCTCTCTGAATTTGAGGAAGGCGATAAGGTACGGAAATTACAATGCAATCACACTTTTCACAAGGACTGCCTCGACAATTGGTTGAAACTCTGTTTCGCTACCTGTCCGCTTTGCCGGAGTAAGGTTCTGCCGGACGATGTGGTCGCCGGCTACCACAGGCTGCGGGACCGCGTGGAGTACGATGGCAGCGACGAG LIEERNPTIRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDVVAGYHRLRDRVEYDGSDE Homology
BLAST of MS010493 vs. NCBI nr
Match: XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]) HSP 1 Score: 199.9 bits (507), Expect = 9.4e-48 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of MS010493 vs. NCBI nr
Match: XP_022963436.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_023517189.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7026818.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46 Identity = 87/91 (95.60%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of MS010493 vs. NCBI nr
Match: XP_023003552.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 194.1 bits (492), Expect = 5.2e-46 Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS010493 vs. NCBI nr
Match: XP_038883588.1 (E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]) HSP 1 Score: 193.0 bits (489), Expect = 1.1e-45 Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS010493 vs. NCBI nr
Match: XP_008440648.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]) HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44 Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of MS010493 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 2.7e-13 Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of MS010493 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2) HSP 1 Score: 75.9 bits (185), Expect = 2.7e-13 Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0
BLAST of MS010493 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12 Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0
BLAST of MS010493 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.9e-11 Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0
BLAST of MS010493 vs. ExPASy Swiss-Prot
Match: Q0VD51 (E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.9e-11 Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of MS010493 vs. ExPASy TrEMBL
Match: A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 4.6e-48 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of MS010493 vs. ExPASy TrEMBL
Match: A0A6J1HG49 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 6.6e-47 Identity = 87/91 (95.60%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of MS010493 vs. ExPASy TrEMBL
Match: A0A6J1KMW2 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497121 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 2.5e-46 Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0
BLAST of MS010493 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44 Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of MS010493 vs. ExPASy TrEMBL
Match: A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44 Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of MS010493 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A ) HSP 1 Score: 75.9 bits (185), Expect = 1.9e-14 Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of MS010493 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B ) HSP 1 Score: 75.9 bits (185), Expect = 1.9e-14 Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0
BLAST of MS010493 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 1.2e-13 Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0
BLAST of MS010493 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 1.2e-13 Identity = 30/70 (42.86%), Postives = 38/70 (54.29%), Query Frame = 0
BLAST of MS010493 vs. TAIR 10
Match: AT3G62690.1 (AtL5 ) HSP 1 Score: 72.0 bits (175), Expect = 2.8e-13 Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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