MS010435 (gene) Bitter gourd (TR) v1

Overview


Name	MS010435
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	scaffold878: 850921 .. 852958 (+)
RNA-Seq Expression	MS010435
Synteny	MS010435

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCGCCGCCACCGTCGGCTCGTCCTTCACCGCTTCCACGCACTCCTTTAAGGGTTTACGGTCCAAGCACTGGCTCTCCGATTCTCTCCTCGCAATGCCATCAACCCAAATGTTGCCTGTCTTGTCACGCTATCTGGCCCTTGAATCGGCTTCGCTCCGAGCTTTCTCCGAGAAGTGGCGGCCGGTTCTGGGCATCTCCGCCGCCGTGGTTCAAGGAGAACCGGCGGTGACGGCTGATGCTGAAGAAGGTGTGGCGGAGGAGAAGGGAGGAGGGGAAGCGGTGGGTGGTGGTTCTCCGGTGGAGGCCGGGAGTACTAAGCTCTACTTTGGGAACTTGCCTTACAGCGTTGATAGTTCCCAGCTCGCCGGCATCGTTCAGGAACATGGGGTCCCTGAGCTTATTGAGGTATACTGCCTGCAAATGTTACTGATTAGTTTTATATTGAACTCTAACATATGATTTACTTCCAATCGAAAGTAAAATATGAAAAATTTAGCTTCGGAGGTCAAGCTCATGAGTTAATTTTCAGTGCTTCAAATCACAATGGGGTTTATAAGAGCAACAATTCGATTACTTTTTCACCATGTTAGATAAGTTGACTAGCTGACAAACTATGAAACCAACTATAAATCTAGATGTTTTTTGGAGTAAAGACCTCAAATCTTAGTGGTCACTTACCCAGTTACCGGAGATCCTACCAGCTTTTGATGTCAAATACTGTAAGTTCAAGTGATTAAATCAGTATCTGAGATGCATATGTTAAGTTAGTTCAAACACCCGCAGAAAATCCACTGGCCACTAGCTCGTTTAGGAGCATATAGGTTTGATACTGGTTGGCAACTATACGTTTATTCAATGAGTCAGCTCCACCTATTTTTTTAATCTGTGAGTGTTGGCGCCAGCTTAAACGTACCTTGACTAATTCAAAGTTCAGCCACCCTACTAGACTTGGACTTTGTTGCGAAAGAAACCTCTAGCTACTTGGCCACCATGATTTGAACCTATCCCCTCAGGCCCTTTACTTTTCTCATTGGCTCCTAATGACTCTTGGACCAACTTATGTGGTTAGCTAGCTCCACATCTTAACAAAGAACAAATAAACAAGATATCCTTGTACAAGGAAGAGCCACGGTTCTTTTATAATATTAGTGACCATTAAACTTGTGATAACTCCAACGCTGCTTCAGAAAAAGTTCAGATGTTGTAATTTCGTCTGTCTAATCCTAAAAACACAGACTTCTCAACTGTCTGCATTCAATCTTTATTTTGAACTAATTCACCAAGAGCATATTTTCTCATTAAATTATTGTTTCTGGAGTCTCTAATCATTTCAAATGGTATAAGGTTCTTTATGACAGGAATACTGGAAAGAGCAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGTAATAGAGTCATCGAAAATCTGGATGGAAGTGTGAGAATCTCTCTCCCACCCTCCCCCCATTCTCTCCTTCATGTTGCTAAGATAATTTCAAATAATTTCAAGAACAAACTATTGGACTCTGATGATAAATATATGAGTGTTTCTTGTCAATCAGGCTTACATGGGCAGAGTTTTGAGGGTTAATTTCTCAGACAAGCCTAAGCCTAAGGAACCTTTATATCCAGAAACAGAGTATAAGCTTTTCGTCGGCAACTTATCCTGGTCGGTAACATCTGAAAGTTTGACACAAGCTTTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGGGAGACTGGAAGGTCACGTGGTTATGGCTTTGTATCTTATTCAACAAAACCAGAGATGGAAAAAGCACTTGAAGCTCTTAATGAAGTGGTAAGAGTCTTTCTTAGTTCTCCTGTATCTTTTTGTTTCACATTATCGTATTATATCATGTAGCTCAATTGTGTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTCATAGGAACTTGAAGGCAGGGTAATACGTGTGAGCTTGGCTGAAGGAAAGCAGGCACAGGGG

mRNA sequence

ATGGCCGCCGCCGCCGCCACCGTCGGCTCGTCCTTCACCGCTTCCACGCACTCCTTTAAGGGTTTACGGTCCAAGCACTGGCTCTCCGATTCTCTCCTCGCAATGCCATCAACCCAAATGTTGCCTGTCTTGTCACGCTATCTGGCCCTTGAATCGGCTTCGCTCCGAGCTTTCTCCGAGAAGTGGCGGCCGGTTCTGGGCATCTCCGCCGCCGTGGTTCAAGGAGAACCGGCGGTGACGGCTGATGCTGAAGAAGGTGTGGCGGAGGAGAAGGGAGGAGGGGAAGCGGTGGGTGGTGGTTCTCCGGTGGAGGCCGGGAGTACTAAGCTCTACTTTGGGAACTTGCCTTACAGCGTTGATAGTTCCCAGCTCGCCGGCATCGTTCAGGAACATGGGGTCCCTGAGCTTATTGAGGTTCTTTATGACAGGAATACTGGAAAGAGCAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGTAATAGAGTCATCGAAAATCTGGATGGAAGTGCTTACATGGGCAGAGTTTTGAGGGTTAATTTCTCAGACAAGCCTAAGCCTAAGGAACCTTTATATCCAGAAACAGAGTATAAGCTTTTCGTCGGCAACTTATCCTGGTCGGTAACATCTGAAAGTTTGACACAAGCTTTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGGGAGACTGGAAGGTCACGTGGTTATGGCTTTGTATCTTATTCAACAAAACCAGAGATGGAAAAAGCACTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTGAGCTTGGCTGAAGGAAAGCAGGCACAGGGG

Coding sequence (CDS)

ATGGCCGCCGCCGCCGCCACCGTCGGCTCGTCCTTCACCGCTTCCACGCACTCCTTTAAGGGTTTACGGTCCAAGCACTGGCTCTCCGATTCTCTCCTCGCAATGCCATCAACCCAAATGTTGCCTGTCTTGTCACGCTATCTGGCCCTTGAATCGGCTTCGCTCCGAGCTTTCTCCGAGAAGTGGCGGCCGGTTCTGGGCATCTCCGCCGCCGTGGTTCAAGGAGAACCGGCGGTGACGGCTGATGCTGAAGAAGGTGTGGCGGAGGAGAAGGGAGGAGGGGAAGCGGTGGGTGGTGGTTCTCCGGTGGAGGCCGGGAGTACTAAGCTCTACTTTGGGAACTTGCCTTACAGCGTTGATAGTTCCCAGCTCGCCGGCATCGTTCAGGAACATGGGGTCCCTGAGCTTATTGAGGTTCTTTATGACAGGAATACTGGAAAGAGCAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGTAATAGAGTCATCGAAAATCTGGATGGAAGTGCTTACATGGGCAGAGTTTTGAGGGTTAATTTCTCAGACAAGCCTAAGCCTAAGGAACCTTTATATCCAGAAACAGAGTATAAGCTTTTCGTCGGCAACTTATCCTGGTCGGTAACATCTGAAAGTTTGACACAAGCTTTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGGGAGACTGGAAGGTCACGTGGTTATGGCTTTGTATCTTATTCAACAAAACCAGAGATGGAAAAAGCACTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTGAGCTTGGCTGAAGGAAAGCAGGCACAGGGG

Protein sequence

MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG

Homology

[Close]

BLAST of MS010435 vs. NCBI nr
Match: XP_022157973.1 (28 kDa ribonucleoprotein, chloroplastic [Momordica charantia])

HSP 1 Score: 545.8 bits (1405), Expect = 2.2e-151
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE
Sbjct: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD
Sbjct: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR
Sbjct: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 283
           GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
Sbjct: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of MS010435 vs. NCBI nr
Match: XP_004134038.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetical protein Csa_010830 [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 4.4e-120
Identity = 233/282 (82.62%), Postives = 250/282 (88.65%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAA  G+SF A+  S +G RSKHWLSDSLLA PSTQ+LP+LSR LA+ES  LRA SE
Sbjct: 1   MAAAAAATGASFFAT--SLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           KWRPV+ ISAAVVQGE AVT   EEGV EE      V GGSPVE+GSTKLYFGNLPYSVD
Sbjct: 61  KWRPVMIISAAVVQGETAVTVGVEEGVEEE----TEVEGGSPVESGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLA IVQ++G+ ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDGSAYMGR+LR
Sbjct: 121 SSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIY+GETG+SR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 283
           GYGFVSYSTK EME ALE +NE+ELEGRVIRVSLAEGKQA G
Sbjct: 241 GYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of MS010435 vs. NCBI nr
Match: XP_016898952.1 (PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo])

HSP 1 Score: 426.8 bits (1096), Expect = 1.5e-115
Identity = 226/272 (83.09%), Postives = 238/272 (87.50%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE
Sbjct: 1   MAAAAAATGASF--FTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           +WRPVL ISAAVVQGE AV    EEGV EE     AV GGSPVE+GSTKLYFGNLPYSVD
Sbjct: 61  RWRPVLIISAAVVQGETAVMVGVEEGVEEE----TAVEGGSPVESGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LR
Sbjct: 121 SSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRV 273
           GYGFVSYSTK EME ALEALNEVELEGRVIRV
Sbjct: 241 GYGFVSYSTKSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of MS010435 vs. NCBI nr
Match: KAA0049207.1 (putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.7e-111
Identity = 218/263 (82.89%), Postives = 230/263 (87.45%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE
Sbjct: 1   MAAAAAATGASF--FTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           +WRPVL ISAAVVQGE AVT   EEGV EE     AV GGSPVE+GSTKLYFGNLPYSVD
Sbjct: 61  RWRPVLIISAAVVQGETAVTVGVEEGVEEE----TAVEGGSPVESGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LR
Sbjct: 121 SSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEV 264
           GYGFVSYSTK EME ALEALNEV
Sbjct: 241 GYGFVSYSTKSEMETALEALNEV 257

[Close]

BLAST of MS010435 vs. NCBI nr
Match: KAG6597332.1 (Nuclear transport factor 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 406.0 bits (1042), Expect = 2.7e-109
Identity = 209/262 (79.77%), Postives = 232/262 (88.55%), Query Frame = 0


Query: 24  SKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADA 83
           +K WLSD+LL  PS  M P+LSR LA+ESA LRAFSE+WRP LGISAAVVQ + AVT   
Sbjct: 24  TKRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPALGISAAVVQRKAAVTFGV 83

Query: 84  EEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVL 143
           EEGVA+   E+G G+AV GGSPVE+G TKLYFGNLPYSVDSSQLA IVQ++GV ELIEVL
Sbjct: 84  EEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVL 143

Query: 144 YDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK 203
           YDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPK  LYP++EY+
Sbjct: 144 YDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGLLYPDSEYE 203

Query: 204 LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEAL 263
           L+V NLSWSVTSESL QAFQEYGNVVGARVIY+ ETG+SRGYGFVSYSTK EME ALEA 
Sbjct: 204 LYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEAC 263

Query: 264 NEVELEGRVIRVSLAEGKQAQG 283
           NE+ELEGRVIRVSLA+GKQAQG
Sbjct: 264 NELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of MS010435 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.7e-38
Identity = 90/217 (41.47%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 76  EPAVTADAEEGV--AEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGV 135
           E A++A+ EE +   EE+   E+V GG        +LY GNLP+S+ SSQL+ I  E G 
Sbjct: 88  EVALSAEEEEEIEEKEERVESESVEGG--------RLYVGNLPFSMTSSQLSEIFAEAGT 147

Query: 136 PELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKE-- 195
              +E++YDR T +SRGFAFVTM S+E+    I   DGS   GR ++VNF + P+  E  
Sbjct: 148 VANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGERE 207

Query: 196 ----------PLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRG 255
                       + ++ +KL+V NLSW++TS+ L  AF +    + A+VIY+  +GRSRG
Sbjct: 208 VMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRG 267

Query: 256 YGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGK 279
           +GF+++S+   M  AL+ +NEVELEGR +R+++A  K
Sbjct: 268 FGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296

[Close]

BLAST of MS010435 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-37
Identity = 94/218 (43.12%), Postives = 134/218 (61.47%), Query Frame = 0


Query: 67  GISAAVVQGEP----AVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSS 126
           G + AV++GE     AV+  +E  V++E G     G   P E    KL+ GNLPY VDS 
Sbjct: 12  GSTNAVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPE--EAKLFVGNLPYDVDSE 71

Query: 127 QLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVN 186
           +LAGI    GV E+ EV+Y+R T +SRGF FVTMS++E+  + +E L+G    GR L VN
Sbjct: 72  KLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN 131

Query: 187 FSDKPKPKEPLYPETEY----KLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGR 246
               P+      P  ++    +++VGNL W V +  L Q F E+G VV ARV+ + ETGR
Sbjct: 132 -KAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGR 191

Query: 247 SRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAE 277
           SRG+GFV+ S++ E+  A+ AL+   L+GR +RV++AE
Sbjct: 192 SRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

[Close]

BLAST of MS010435 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.4e-36
Identity = 88/218 (40.37%), Postives = 129/218 (59.17%), Query Frame = 0


Query: 76  EPAVTADAEEGVAEEKGGGEAVGGGSPVEAG-----------STKLYFGNLPYSVDSSQL 135
           EP+     EEG  E  G     G    VEA              KL+ GNLPY VDS  L
Sbjct: 96  EPSGEETEEEGFVEAVGD---AGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGL 155

Query: 136 AGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFS 195
           A + ++ GV E+ EV+Y+R+T +SRGF FVTMS++E+  + +E  +     GR+L VN +
Sbjct: 156 ARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKA 215

Query: 196 ----DKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 255
               ++P+ + P   E  Y+++VGN+ W +    L Q F E+G VV ARV+Y+ ETGRSR
Sbjct: 216 ARRGERPE-RPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSR 275

Query: 256 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGK 279
           G+GFV+ +++ EM  A+  L+   L+GR IRV++AE +
Sbjct: 276 GFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309

[Close]

BLAST of MS010435 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.0e-36
Identity = 81/198 (40.91%), Postives = 126/198 (63.64%), Query Frame = 0


Query: 87  VAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTG 146
           V EE          S  E G+ +LY GN+P ++++ +L  IV+EHG  E+ EV+YD+ +G
Sbjct: 64  VTEETSSSSTASSSSDGE-GARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSG 123

Query: 147 KSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKP---------KPKEPLYPET 206
           +SR F FVTM ++ED N VIE L+ +   GR ++VN ++KP         + ++  + E+
Sbjct: 124 RSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVES 183

Query: 207 EYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKAL 266
            YK+++GNL+ +VT+E L   F E G V+GA+V     T +S G+GFVS+S++ E+E A+
Sbjct: 184 PYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAI 243

Query: 267 EALNEVELEGRVIRVSLA 276
           +ALN   LEG+ IRV+ A
Sbjct: 244 QALNNSVLEGQKIRVNKA 260

[Close]

BLAST of MS010435 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.1e-36
Identity = 84/207 (40.58%), Postives = 125/207 (60.39%), Query Frame = 0


Query: 82  DAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLY 141
           D ++GV EE+         SP      K++ GNLP+S DS+ LA + +  G  E++EV+Y
Sbjct: 72  DGDDGVEEER-------NFSP----DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIY 131

Query: 142 DRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPL-------- 201
           D+ TG+SRGF FVTMSS E+     +  +G    GR LRVN    P+ +E          
Sbjct: 132 DKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRG 191

Query: 202 --YPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKP 261
               ++  +++VGNL+W V  ++L   F E G VV A+V+Y+ ++GRSRG+GFV+YS+  
Sbjct: 192 GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAE 251

Query: 262 EMEKALEALNEVELEGRVIRVSLAEGK 279
           E+  A+E+L+ V+L GR IRVS AE +
Sbjct: 252 EVNNAIESLDGVDLNGRAIRVSPAEAR 267

[Close]

BLAST of MS010435 vs. ExPASy TrEMBL
Match: A0A6J1DUT6 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024570 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.0e-151
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE
Sbjct: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD
Sbjct: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR
Sbjct: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 283
           GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG
Sbjct: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of MS010435 vs. ExPASy TrEMBL
Match: A0A0A0L496 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 2.1e-120
Identity = 233/282 (82.62%), Postives = 250/282 (88.65%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAA  G+SF A+  S +G RSKHWLSDSLLA PSTQ+LP+LSR LA+ES  LRA SE
Sbjct: 1   MAAAAAATGASFFAT--SLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESPLLRASSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           KWRPV+ ISAAVVQGE AVT   EEGV EE      V GGSPVE+GSTKLYFGNLPYSVD
Sbjct: 61  KWRPVMIISAAVVQGETAVTVGVEEGVEEE----TEVEGGSPVESGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLA IVQ++G+ ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDGSAYMGR+LR
Sbjct: 121 SSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIY+GETG+SR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 283
           GYGFVSYSTK EME ALE +NE+ELEGRVIRVSLAEGKQA G
Sbjct: 241 GYGFVSYSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of MS010435 vs. ExPASy TrEMBL
Match: A0A1S4DSH7 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 7.1e-116
Identity = 226/272 (83.09%), Postives = 238/272 (87.50%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE
Sbjct: 1   MAAAAAATGASF--FTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           +WRPVL ISAAVVQGE AV    EEGV EE     AV GGSPVE+GSTKLYFGNLPYSVD
Sbjct: 61  RWRPVLIISAAVVQGETAVMVGVEEGVEEE----TAVEGGSPVESGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LR
Sbjct: 121 SSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEVELEGRVIRV 273
           GYGFVSYSTK EME ALEALNEVELEGRVIRV
Sbjct: 241 GYGFVSYSTKSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of MS010435 vs. ExPASy TrEMBL
Match: A0A5D3CZH4 (Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002080 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 8.1e-112
Identity = 218/263 (82.89%), Postives = 230/263 (87.45%), Query Frame = 0


Query: 1   MAAAAATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSE 60
           MAAAAA  G+SF   T   +G RSKHW SDSLLA PSTQ+LP+LSR L +ES  LRA SE
Sbjct: 1   MAAAAAATGASF--FTTPLRGSRSKHWFSDSLLATPSTQVLPILSRSLTIESPPLRASSE 60

Query: 61  KWRPVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVD 120
           +WRPVL ISAAVVQGE AVT   EEGV EE     AV GGSPVE+GSTKLYFGNLPYSVD
Sbjct: 61  RWRPVLIISAAVVQGETAVTVGVEEGVEEE----TAVEGGSPVESGSTKLYFGNLPYSVD 120

Query: 121 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 180
           SSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LR
Sbjct: 121 SSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILR 180

Query: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 240
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIYNGETG+SR
Sbjct: 181 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSR 240

Query: 241 GYGFVSYSTKPEMEKALEALNEV 264
           GYGFVSYSTK EME ALEALNEV
Sbjct: 241 GYGFVSYSTKSEMETALEALNEV 257

[Close]

BLAST of MS010435 vs. ExPASy TrEMBL
Match: A0A6J1FA65 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443680 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.3e-109
Identity = 209/262 (79.77%), Postives = 232/262 (88.55%), Query Frame = 0


Query: 24  SKHWLSDSLLAMPSTQMLPVLSRYLALESASLRAFSEKWRPVLGISAAVVQGEPAVTADA 83
           +K WLSD+LL  PS  M P+LSR LA+ESA LRAFSE+WRP LGISAAVVQ + AVT   
Sbjct: 24  TKRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPALGISAAVVQRKAAVTFGV 83

Query: 84  EEGVAE---EKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVL 143
           EEGVA+   E+G G+AV GGSPVE+G TKLYFGNLPYSVDSSQLA IVQ++GV ELIEVL
Sbjct: 84  EEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVL 143

Query: 144 YDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKPKEPLYPETEYK 203
           YDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKPKPK  LYP++EY+
Sbjct: 144 YDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGLLYPDSEYE 203

Query: 204 LFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEAL 263
           L+V NLSWSVTSESL QAFQEYGNVVGARVIY+ ETG+SRGYGFVSYSTK EME ALEA 
Sbjct: 204 LYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEAC 263

Query: 264 NEVELEGRVIRVSLAEGKQAQG 283
           NE+ELEGRVIRVSLA+GKQAQG
Sbjct: 264 NELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of MS010435 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 262.7 bits (670), Expect = 3.4e-70
Identity = 135/202 (66.83%), Postives = 167/202 (82.67%), Query Frame = 0


Query: 79  VTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIE 138
           +T   EE   EEK  G A     P  A +TKLYFGNLPY+VDS+ LA I+Q+   PEL+E
Sbjct: 60  ITVKLEE---EEKDDG-ASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVE 119

Query: 139 VLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKPKP-KEPLYPET 198
           VLY+R+TG+SRGFAFVTMS++EDCN +I+NLDG+ Y+GR L+VNF+DKPKP KEPLYPET
Sbjct: 120 VLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPET 179

Query: 199 EYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKAL 258
           E+KLFVGNLSW+VTSESL  AF+E G+VVGARV+++G+TGRSRGYGFV YS+K EME AL
Sbjct: 180 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 239

Query: 259 EALNEVELEGRVIRVSLAEGKQ 280
           E+L+  ELEGR IRV+LA+GK+
Sbjct: 240 ESLDGFELEGRAIRVNLAQGKK 257

[Close]

BLAST of MS010435 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-36
Identity = 86/224 (38.39%), Postives = 133/224 (59.38%), Query Frame = 0


Query: 71  AVVQGEPAVTADAEEG---VAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGI 130
           A V+ E  V  + +EG   V EEK   +A G     E G  +LY GNLPY++ SS+L+ I
Sbjct: 83  ASVEEEEEVEEEGDEGEEEVEEEKQTTQASG-----EEG--RLYVGNLPYTITSSELSQI 142

Query: 131 VQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKP 190
             E G    ++++YD+ T +SRGF FVTM SIE+    ++  + S   GR ++VNF + P
Sbjct: 143 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 202

Query: 191 KPKE------------PLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGE 250
           +  E              Y ++ +K++ GNL W++TS+ L  AF +   V+GA+VIY   
Sbjct: 203 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 262

Query: 251 TGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQ 280
           TGRSRG+GF+S+ +   ++ AL  +N VE+EGR +R++LA  ++
Sbjct: 263 TGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299

[Close]

BLAST of MS010435 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 148.7 bits (374), Expect = 7.2e-36
Identity = 74/184 (40.22%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 102 PVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIED 161
           P    + ++Y GN+P +V + QL  +V+EHG  E ++V+YD+ +G+SR F F TM S+ED
Sbjct: 70  PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129

Query: 162 CNRVIENLDGSAYMGRVLRVNFSDKPKPKEP----------LYPETEYKLFVGNLSWSVT 221
            N V+E L+G+   GR ++VN ++KP    P           + ++ YK++VGNL+ +VT
Sbjct: 130 ANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVT 189

Query: 222 SESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIR 276
            E L   F E G VV A+V     T +S G+GFV++S++ ++E A+ ALN   LEG+ IR
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 249

[Close]

BLAST of MS010435 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 148.7 bits (374), Expect = 7.2e-36
Identity = 74/184 (40.22%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 102 PVEAGSTKLYFGNLPYSVDSSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIED 161
           P    + ++Y GN+P +V + QL  +V+EHG  E ++V+YD+ +G+SR F F TM S+ED
Sbjct: 70  PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129

Query: 162 CNRVIENLDGSAYMGRVLRVNFSDKPKPKEP----------LYPETEYKLFVGNLSWSVT 221
            N V+E L+G+   GR ++VN ++KP    P           + ++ YK++VGNL+ +VT
Sbjct: 130 ANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVT 189

Query: 222 SESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKPEMEKALEALNEVELEGRVIR 276
            E L   F E G VV A+V     T +S G+GFV++S++ ++E A+ ALN   LEG+ IR
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 249

[Close]

BLAST of MS010435 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-35
Identity = 85/209 (40.67%), Postives = 123/209 (58.85%), Query Frame = 0


Query: 81  ADAEEGVAEEKGGGEAV---------GGGSPVEAGSTKLYFGNLPYSVDSSQLAGIVQEH 140
           A+ EEG     GG             G G P      KL+ GNLPY VDS  LA + ++ 
Sbjct: 77  AEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQA 136

Query: 141 GVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFS----DKP 200
           G  E+ EV+Y+R+T +SRGF FVTMS++E+  + +E  +     GR L VN +     +P
Sbjct: 137 GTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRP 196

Query: 201 KPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSY 260
           + ++P   +  ++++VGNL W V S  L + F E+G VV ARV+ + ETGRSRG+GFV  
Sbjct: 197 E-RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQM 256

Query: 261 STKPEMEKALEALNEVELEGRVIRVSLAE 277
           S + E+  A+ AL+   LEGR I+V++AE
Sbjct: 257 SNENEVNVAIAALDGQNLEGRAIKVNVAE 284

The following BLAST results are available for this feature:

BLAST of MS010435 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157973.1	2.2e-151	100.00	28 kDa ribonucleoprotein, chloroplastic [Momordica charantia]	[more]
XP_004134038.1	4.4e-120	82.62	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetic...	[more]
XP_016898952.1	1.5e-115	83.09	PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo]	[more]
KAA0049207.1	1.7e-111	82.89	putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-...	[more]
KAG6597332.1	2.7e-109	79.77	Nuclear transport factor 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS010435 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	5.7e-38	41.47	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	1.3e-37	43.12	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19683	5.4e-36	40.37	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P82277	7.0e-36	40.91	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q08935	9.1e-36	40.58	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of MS010435 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUT6	1.0e-151	100.00	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A0A0L496	2.1e-120	82.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1	[more]
A0A1S4DSH7	7.1e-116	83.09	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3CZH4	8.1e-112	82.89	Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1FA65	1.3e-109	79.77	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of MS010435 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60000.1	3.4e-70	66.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.9e-36	38.39	chloroplast RNA-binding protein 33	[more]
AT3G52150.1	7.2e-36	40.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	7.2e-36	40.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	1.2e-35	40.67	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 109..182 e-value: 3.1E-20 score: 83.2 coord: 200..273 e-value: 5.5E-28 score: 109.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 201..271 e-value: 5.4E-22 score: 77.4 coord: 110..180 e-value: 1.0E-13 score: 50.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 199..277 score: 20.337597
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 108..186 score: 16.448967
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 189..282 e-value: 5.0E-29 score: 103.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 74..188 e-value: 1.3E-22 score: 82.4
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 144..184
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 85..147
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 85..147
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 190..279
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 190..279
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 144..184
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 194..279
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 104..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010435.1	MS010435.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding