MS010414 (gene) Bitter gourd (TR) v1

Overview


Name	MS010414
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Embryo sac development arrest protein
Location	scaffold878: 739353 .. 739739 (-)
RNA-Seq Expression	MS010414
Synteny	MS010414

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAAATGAGTTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAGAAAGCGGAAGGAGCCGTCGGCTCATTACGACGTCAAGCCATCGACTCCGAGAACCGGAGAGCCTCCGGTTTCTTCGAACCGGCTGCTAGCCGGGTACATGGCTTATGAGTTTCTGACGAAAGGAACCATATTGGGCCGGAAGTTCGACCCGGCTCGAGGCGAACCAAGCCCATCCAGCCCTGCCACGTGGAAGAAAGCGAAAACGGGAGCCGAGGAGCCGTCAGAGACGAAGAAAGAGCATCAGAGCTACTCGGAGGTGGCGAGCATTCTGAAGACAGATGGGGCCCACATACCCGGGGTCGTGAACCCGAGCCAGCTGGCTCGGTGGCTTCAGAAG

mRNA sequence

GAGAAAATGAGTTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAGAAAGCGGAAGGAGCCGTCGGCTCATTACGACGTCAAGCCATCGACTCCGAGAACCGGAGAGCCTCCGGTTTCTTCGAACCGGCTGCTAGCCGGGTACATGGCTTATGAGTTTCTGACGAAAGGAACCATATTGGGCCGGAAGTTCGACCCGGCTCGAGGCGAACCAAGCCCATCCAGCCCTGCCACGTGGAAGAAAGCGAAAACGGGAGCCGAGGAGCCGTCAGAGACGAAGAAAGAGCATCAGAGCTACTCGGAGGTGGCGAGCATTCTGAAGACAGATGGGGCCCACATACCCGGGGTCGTGAACCCGAGCCAGCTGGCTCGGTGGCTTCAGAAG

Coding sequence (CDS)

GAGAAAATGAGTTTCCACAGCCGTGGGCTGTTATCGGCTGGGCCGTCCAGAAAGCGGAAGGAGCCGTCGGCTCATTACGACGTCAAGCCATCGACTCCGAGAACCGGAGAGCCTCCGGTTTCTTCGAACCGGCTGCTAGCCGGGTACATGGCTTATGAGTTTCTGACGAAAGGAACCATATTGGGCCGGAAGTTCGACCCGGCTCGAGGCGAACCAAGCCCATCCAGCCCTGCCACGTGGAAGAAAGCGAAAACGGGAGCCGAGGAGCCGTCAGAGACGAAGAAAGAGCATCAGAGCTACTCGGAGGTGGCGAGCATTCTGAAGACAGATGGGGCCCACATACCCGGGGTCGTGAACCCGAGCCAGCTGGCTCGGTGGCTTCAGAAG

Protein sequence

EKMSFHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRKFDPARGEPSPSSPATWKKAKTGAEEPSETKKEHQSYSEVASILKTDGAHIPGVVNPSQLARWLQK

Homology

[Close]

BLAST of MS010414 vs. NCBI nr
Match: KGN56835.1 (hypothetical protein Csa_009887 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 3.1e-36
Identity = 87/131 (66.41%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRK 64
           FHSRGLLSAGPS+KRKEPS      PS  + GEP VSSNRLLAGYMAYEFLTKGT+ GRK
Sbjct: 5   FHSRGLLSAGPSKKRKEPST-----PSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRK 64

Query: 65  FDPARGEPSPSSPAT----WKKAKTGAEEPSETKKEH--QSYSEVASILKTDGAHIPGVV 124
           FDP R E +PS+ +     WKK K+ A  P   KKEH  QSY+EVA+ILKT G+HI G+V
Sbjct: 65  FDPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIV 124

Query: 125 NPSQLARWLQK 130
           NP+QL RWLQK
Sbjct: 125 NPTQLGRWLQK 130

[Close]

BLAST of MS010414 vs. NCBI nr
Match: XP_022924296.1 (uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothetical protein SDJN03_22403, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018804.1 hypothetical protein SDJN02_20677, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 3.1e-36
Identity = 86/127 (67.72%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRK 64
           FHSRGLL AGPSRKRKEP+A         +  EPPVSSNRLLAGYMAYEFLTKGTILGR+
Sbjct: 5   FHSRGLLPAGPSRKRKEPAA--------LKASEPPVSSNRLLAGYMAYEFLTKGTILGRE 64

Query: 65  FDPARGEPSPSSPATWKKAKTGAEEPSETKKEH--QSYSEVASILKTDGAHIPGVVNPSQ 124
           F+P R E  PS+ A WKK+K+ A  P   KKEH  QSY+EVA+ILKT G HIP +VNP+Q
Sbjct: 65  FNPGRAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQ 123

Query: 125 LARWLQK 130
           L RWLQK
Sbjct: 125 LGRWLQK 123

[Close]

BLAST of MS010414 vs. NCBI nr
Match: XP_023526927.1 (uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.1 bits (401), Expect = 2.6e-35
Identity = 85/127 (66.93%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRK 64
           FHSRGLL AGPSRKRKEP+A         +  EP VSSNRLLAGYMAYEFLTKGTILGR+
Sbjct: 5   FHSRGLLPAGPSRKRKEPAA--------LKASEPSVSSNRLLAGYMAYEFLTKGTILGRE 64

Query: 65  FDPARGEPSPSSPATWKKAKTGAEEPSETKKEH--QSYSEVASILKTDGAHIPGVVNPSQ 124
           F+P R E  PS+ A WKK+K+ A  P   KKEH  QSY+EVA+ILKT G HIP +VNP+Q
Sbjct: 65  FNPGRAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQ 123

Query: 125 LARWLQK 130
           L RWLQK
Sbjct: 125 LGRWLQK 123

[Close]

BLAST of MS010414 vs. NCBI nr
Match: XP_022979583.1 (uncharacterized protein LOC111479265 [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 84/127 (66.14%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRK 64
           FH RGLL  GPSRKRKEP+A         +  EPPVSSNRLLAGYMAYEFLTKGTILGR+
Sbjct: 5   FHIRGLLPPGPSRKRKEPAA--------LKASEPPVSSNRLLAGYMAYEFLTKGTILGRE 64

Query: 65  FDPARGEPSPSSPATWKKAKTGAEEPSETKKEH--QSYSEVASILKTDGAHIPGVVNPSQ 124
           F+P + E  PS+ A WKK+K+ A  P   KKEH  QSY+EVA+ILKT GAHIP +VNP+Q
Sbjct: 65  FNPGQAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNPTQ 123

Query: 125 LARWLQK 130
           L RWLQK
Sbjct: 125 LGRWLQK 123

[Close]

BLAST of MS010414 vs. NCBI nr
Match: XP_008438490.1 (PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 uncharacterized protein E6C27_scaffold171G004700 [Cucumis melo var. makuwa] >TYK17328.1 uncharacterized protein E5676_scaffold434G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 88/132 (66.67%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTP-RTGEPPVSSNRLLAGYMAYEFLTKGTILGR 64
           FHSRGLLSAGPS+KRKEPS      P+ P + GEP V SNRLLAGYMAYEFLTKGT+ GR
Sbjct: 5   FHSRGLLSAGPSKKRKEPST-----PAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGR 64

Query: 65  KFDPARGEPSPSSPAT--WKKAKTGAEEPSETKKEH----QSYSEVASILKTDGAHIPGV 124
           KFDP R E +PSS A   WKK K  A  P   KKEH    QSY+EVA+ILKT G+HI G+
Sbjct: 65  KFDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGI 124

Query: 125 VNPSQLARWLQK 130
           VNP+QL RWLQK
Sbjct: 125 VNPTQLGRWLQK 131

[Close]

BLAST of MS010414 vs. ExPASy TrEMBL
Match: A0A0A0L4C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 87/131 (66.41%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRK 64
           FHSRGLLSAGPS+KRKEPS      PS  + GEP VSSNRLLAGYMAYEFLTKGT+ GRK
Sbjct: 5   FHSRGLLSAGPSKKRKEPST-----PSASKAGEPSVSSNRLLAGYMAYEFLTKGTLFGRK 64

Query: 65  FDPARGEPSPSSPAT----WKKAKTGAEEPSETKKEH--QSYSEVASILKTDGAHIPGVV 124
           FDP R E +PS+ +     WKK K+ A  P   KKEH  QSY+EVA+ILKT G+HI G+V
Sbjct: 65  FDPPRDEATPSAASAAVIQWKKPKSDAAPPEILKKEHQIQSYAEVANILKTTGSHISGIV 124

Query: 125 NPSQLARWLQK 130
           NP+QL RWLQK
Sbjct: 125 NPTQLGRWLQK 130

[Close]

BLAST of MS010414 vs. ExPASy TrEMBL
Match: A0A6J1E960 (uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC111431827 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 86/127 (67.72%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRK 64
           FHSRGLL AGPSRKRKEP+A         +  EPPVSSNRLLAGYMAYEFLTKGTILGR+
Sbjct: 5   FHSRGLLPAGPSRKRKEPAA--------LKASEPPVSSNRLLAGYMAYEFLTKGTILGRE 64

Query: 65  FDPARGEPSPSSPATWKKAKTGAEEPSETKKEH--QSYSEVASILKTDGAHIPGVVNPSQ 124
           F+P R E  PS+ A WKK+K+ A  P   KKEH  QSY+EVA+ILKT G HIP +VNP+Q
Sbjct: 65  FNPGRAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGGHIPEIVNPTQ 123

Query: 125 LARWLQK 130
           L RWLQK
Sbjct: 125 LGRWLQK 123

[Close]

BLAST of MS010414 vs. ExPASy TrEMBL
Match: A0A5A7U1L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001830 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.8e-35
Identity = 88/132 (66.67%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTP-RTGEPPVSSNRLLAGYMAYEFLTKGTILGR 64
           FHSRGLLSAGPS+KRKEPS      P+ P + GEP V SNRLLAGYMAYEFLTKGT+ GR
Sbjct: 5   FHSRGLLSAGPSKKRKEPST-----PAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGR 64

Query: 65  KFDPARGEPSPSSPAT--WKKAKTGAEEPSETKKEH----QSYSEVASILKTDGAHIPGV 124
           KFDP R E +PSS A   WKK K  A  P   KKEH    QSY+EVA+ILKT G+HI G+
Sbjct: 65  KFDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGI 124

Query: 125 VNPSQLARWLQK 130
           VNP+QL RWLQK
Sbjct: 125 VNPTQLGRWLQK 131

[Close]

BLAST of MS010414 vs. ExPASy TrEMBL
Match: A0A6J1IWN8 (uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.8e-35
Identity = 84/127 (66.14%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRK 64
           FH RGLL  GPSRKRKEP+A         +  EPPVSSNRLLAGYMAYEFLTKGTILGR+
Sbjct: 5   FHIRGLLPPGPSRKRKEPAA--------LKASEPPVSSNRLLAGYMAYEFLTKGTILGRE 64

Query: 65  FDPARGEPSPSSPATWKKAKTGAEEPSETKKEH--QSYSEVASILKTDGAHIPGVVNPSQ 124
           F+P + E  PS+ A WKK+K+ A  P   KKEH  QSY+EVA+ILKT GAHIP +VNP+Q
Sbjct: 65  FNPGQAEAIPSAAAQWKKSKSEAAPPEILKKEHQIQSYTEVATILKTTGAHIPEIVNPTQ 123

Query: 125 LARWLQK 130
           L RWLQK
Sbjct: 125 LGRWLQK 123

[Close]

BLAST of MS010414 vs. ExPASy TrEMBL
Match: A0A1S3AWH5 (uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.8e-35
Identity = 88/132 (66.67%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 5   FHSRGLLSAGPSRKRKEPSAHYDVKPSTP-RTGEPPVSSNRLLAGYMAYEFLTKGTILGR 64
           FHSRGLLSAGPS+KRKEPS      P+ P + GEP V SNRLLAGYMAYEFLTKGT+ GR
Sbjct: 5   FHSRGLLSAGPSKKRKEPST-----PAPPNKAGEPSVLSNRLLAGYMAYEFLTKGTLFGR 64

Query: 65  KFDPARGEPSPSSPAT--WKKAKTGAEEPSETKKEH----QSYSEVASILKTDGAHIPGV 124
           KFDP R E +PSS A   WKK K  A  P   KKEH    QSY+EVA+ILKT G+HI G+
Sbjct: 65  KFDPTRDEATPSSAAVSQWKKPKFEAAPPEILKKEHQNQIQSYAEVANILKTTGSHISGI 124

Query: 125 VNPSQLARWLQK 130
           VNP+QL RWLQK
Sbjct: 125 VNPTQLGRWLQK 131

[Close]

BLAST of MS010414 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 )

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-18
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 14  GPSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRKFDPARGEPS 73
           G SRKRK+  +  D++ +         + N LLAGYMA+E+LT GT+LGRK      E  
Sbjct: 10  GASRKRKDTES--DLREA--------ATPNWLLAGYMAHEYLTCGTMLGRKLYSGWAEVG 69

Query: 74  P-SSPATWKKAKTGAEEPSETKKEHQSYSEVASILKTDGAHIPGVVNPSQLARWLQ 129
           P  SP+          +  E KK  QSYSEVAS+ KTDG H+PGVVNP+QLA+W+Q
Sbjct: 70  PLVSPSPL--------QSREVKKARQSYSEVASVFKTDGNHVPGVVNPTQLAKWIQ 107

[Close]

BLAST of MS010414 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-16
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 39  PVSSNRLLAGYMAYEFLTKGTILGRKFDPARGEPSPSSPATWKKAKTGAE---EPSETKK 98
           PV SN+LLAGY+A+EFL  GT+ G  ++P + +  P +  +    K       EPS+ K+
Sbjct: 59  PVCSNQLLAGYLAHEFLNNGTLFGELWNPTKAQAGPLTTQSIDPRKNKPSHDIEPSDHKR 118

Query: 99  EHQSYSEVASILKTDGAHIPGVVNPSQLARWLQ 129
             + Y EVA+IL+ DG H+PG+VNPSQLAR+L+
Sbjct: 119 --RRYVEVANILRVDGTHLPGIVNPSQLARFLK 149

[Close]

BLAST of MS010414 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-14
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 15  PSRKRKEPSAHYDVKPSTPRTGEPPVSSNRLLAGYMAYEFLTKGTILGRKFDPARGEPSP 74
           P  K   P  +   K S+    EP  S+  +LAGY+++E+LT+GT+ G +++ AR +   
Sbjct: 42  PPPKLVPPPVNPISKKSSTAAAEPIGSNQLMLAGYLSHEYLTQGTLFGEQWNQARAQAES 101

Query: 75  SSPATWKKAKTGAEEPSETKKEHQSYSEVASILKTDGAHIPGVVNPSQLARWLQ 129
           S      K     E   E + + + Y EVA++L++DGA +PG+VNP+QLAR+L+
Sbjct: 102 SK----IKPSHTVEPAEECEPKRKRYREVANLLRSDGAQLPGIVNPAQLARFLK 151

The following BLAST results are available for this feature:

BLAST of MS010414 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56835.1	3.1e-36	66.41	hypothetical protein Csa_009887 [Cucumis sativus]	[more]
XP_022924296.1	3.1e-36	67.72	uncharacterized protein LOC111431827 [Cucurbita moschata] >KAG6582401.1 hypothet...	[more]
XP_023526927.1	2.6e-35	66.93	uncharacterized protein LOC111790299 [Cucurbita pepo subsp. pepo]	[more]
XP_022979583.1	5.8e-35	66.14	uncharacterized protein LOC111479265 [Cucurbita maxima]	[more]
XP_008438490.1	5.8e-35	66.67	PREDICTED: uncharacterized protein LOC103483571 [Cucumis melo] >KAA0049230.1 unc...	[more]

BLAST of MS010414 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010414 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4C1	1.5e-36	66.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134830 PE=4 SV=1	[more]
A0A6J1E960	1.5e-36	67.72	uncharacterized protein LOC111431827 OS=Cucurbita moschata OX=3662 GN=LOC1114318...	[more]
A0A5A7U1L2	2.8e-35	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1IWN8	2.8e-35	66.14	uncharacterized protein LOC111479265 OS=Cucurbita maxima OX=3661 GN=LOC111479265...	[more]
A0A1S3AWH5	2.8e-35	66.67	uncharacterized protein LOC103483571 OS=Cucumis melo OX=3656 GN=LOC103483571 PE=...	[more]

BLAST of MS010414 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23440.1	4.0e-18	47.41	embryo sac development arrest 6	[more]
AT5G44060.1	3.8e-16	46.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G04000.1	6.0e-14	36.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR34657	EMBRYO SAC DEVELOPMENT ARREST 6	coord: 32..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010414.1	MS010414.1	mRNA