MS010347 (gene) Bitter gourd (TR) v1

Overview


Name	MS010347
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zf-RVT domain-containing protein
Location	scaffold878: 369357 .. 369533 (-)
RNA-Seq Expression	MS010347
Synteny	MS010347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAAGATAATAAATTCTTCATGTGGTCCTTGGCATTTAGAGGAGTCAACAGAACTGATTGTGTCCAAAACGTCATTTCTTTCTTTTGCCTTTCTCCTGATTGGTGTGTCCTTTGCAATAGTGAGAATGAAAATCTAGAGGGCCTGTTTTCCCAATGTCCCCACATGATGGGATCT

mRNA sequence

CCCAAAGATAATAAATTCTTCATGTGGTCCTTGGCATTTAGAGGAGTCAACAGAACTGATTGTGTCCAAAACGTCATTTCTTTCTTTTGCCTTTCTCCTGATTGGTGTGTCCTTTGCAATAGTGAGAATGAAAATCTAGAGGGCCTGTTTTCCCAATGTCCCCACATGATGGGATCT

Coding sequence (CDS)

CCCAAAGATAATAAATTCTTCATGTGGTCCTTGGCATTTAGAGGAGTCAACAGAACTGATTGTGTCCAAAACGTCATTTCTTTCTTTTGCCTTTCTCCTGATTGGTGTGTCCTTTGCAATAGTGAGAATGAAAATCTAGAGGGCCTGTTTTCCCAATGTCCCCACATGATGGGATCT

Protein sequence

PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMMGS

Homology

[Close]

BLAST of MS010347 vs. NCBI nr
Match: XP_034223760.1 (THO complex subunit 1 isoform X1 [Prunus dulcis])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 517 PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 573

[Close]

BLAST of MS010347 vs. NCBI nr
Match: VVA30963.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 378 PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 434

[Close]

BLAST of MS010347 vs. NCBI nr
Match: VVA22845.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 70  PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 126

[Close]

BLAST of MS010347 vs. NCBI nr
Match: XP_034223765.1 (THO complex subunit 1 isoform X5 [Prunus dulcis])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 453 PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 509

[Close]

BLAST of MS010347 vs. NCBI nr
Match: XP_034223762.1 (THO complex subunit 1 isoform X3 [Prunus dulcis])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 492 PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 548

[Close]

BLAST of MS010347 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPH 56
           PK  KFF+W+L    +N  D +Q  +  + LSP+WC +CN   E++  LF  CP+
Sbjct: 328 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPY 382

[Close]

BLAST of MS010347 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPH 56
           PK  KFF+W+L    +N  D +Q  +  + LSP+WC +CN   E++  LF  CP+
Sbjct: 285 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPY 339

[Close]

BLAST of MS010347 vs. ExPASy TrEMBL
Match: A0A5E4FPC7 (zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035784 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 70  PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 126

[Close]

BLAST of MS010347 vs. ExPASy TrEMBL
Match: A0A5E4FU33 (zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035216 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 378 PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 434

[Close]

BLAST of MS010347 vs. ExPASy TrEMBL
Match: A0A5E4F410 (zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035331 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 23/57 (40.35%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 1   PKDNKFFMWSLAFRGVNRTDCVQNVISFFCLSPDWCVLCNSENENLEGLFSQCPHMM 58
           P   +FF+W  A   +N  DC+Q      CLSP WCVLC    EN++ LF  C + +
Sbjct: 70  PPKIQFFVWLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSL 126

The following BLAST results are available for this feature:

BLAST of MS010347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034223760.1	2.2e-05	40.35	THO complex subunit 1 isoform X1 [Prunus dulcis]	[more]
VVA30963.1	2.2e-05	40.35	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
VVA22845.1	2.2e-05	40.35	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
XP_034223765.1	2.2e-05	40.35	THO complex subunit 1 isoform X5 [Prunus dulcis]	[more]
XP_034223762.1	2.2e-05	40.35	THO complex subunit 1 isoform X3 [Prunus dulcis]	[more]

BLAST of MS010347 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSA7	1.1e-05	40.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	1.1e-05	40.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5E4FPC7	1.1e-05	40.35	zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2...	[more]
A0A5E4FU33	1.1e-05	40.35	zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2...	[more]
A0A5E4F410	1.1e-05	40.35	zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2...	[more]

BLAST of MS010347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010347.1	MS010347.1	mRNA