MS010314 (gene) Bitter gourd (TR) v1

Overview


Name	MS010314
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit alpha
Location	scaffold878: 84987 .. 85085 (-)
RNA-Seq Expression	MS010314
Synteny	MS010314

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGTTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGG

mRNA sequence

AAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGTTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGG

Coding sequence (CDS)

AAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGTTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGG

Protein sequence

KLELAQYREVAAFVQFGSDLDAATQALLNRGAR

Homology

[Close]

BLAST of MS010314 vs. NCBI nr
Match: QJC70476.1 (ATP synthase F1 subunit 1, partial [Adenocalymma cymbalum])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 392 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 424

[Close]

BLAST of MS010314 vs. NCBI nr
Match: ADR66843.1 (ATPase subunit 1, partial [Ternstroemia gymnanthera])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 357 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 389

[Close]

BLAST of MS010314 vs. NCBI nr
Match: AUD38685.1 (ATP synthase F1 subunit 1 [Anthospermum spathulatum])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

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BLAST of MS010314 vs. NCBI nr
Match: QHB79529.1 (ATPase subunit 1 [Sesuvium portulacastrum])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. NCBI nr
Match: AAM95211.1 (ATPase F1 alpha subunit, partial [Luzula acuminata])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 357 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 389

[Close]

BLAST of MS010314 vs. ExPASy Swiss-Prot
Match: P92549 (ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATPA PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. ExPASy Swiss-Prot
Match: Q06735 (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. ExPASy Swiss-Prot
Match: P68542 (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. ExPASy Swiss-Prot
Match: P22201 (ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. ExPASy Swiss-Prot
Match: P05494 (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. ExPASy TrEMBL
Match: Q9XPB2 (ATP synthase subunit alpha OS=Vigna radiata var. radiata OX=3916 GN=atp alpha PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. ExPASy TrEMBL
Match: M1G679 (ATP synthase subunit alpha (Fragment) OS=Gossypium hirsutum OX=3635 GN=atp1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 398 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 430

[Close]

BLAST of MS010314 vs. ExPASy TrEMBL
Match: A0A6U7JZ41 (ATP synthase subunit alpha OS=Haptolina brevifila OX=156173 GN=CBRE1094_LOCUS33047 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 431 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 463

[Close]

BLAST of MS010314 vs. ExPASy TrEMBL
Match: A0A1B2ARU1 (ATP synthase subunit alpha OS=Stratiotes aloides OX=55494 GN=atp1 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 374 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 406

[Close]

BLAST of MS010314 vs. ExPASy TrEMBL
Match: A0A1C9ZNX9 (ATP synthase subunit alpha OS=Hordeum vulgare subsp. spontaneum OX=77009 GN=atp1 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 664 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 696

[Close]

BLAST of MS010314 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQYREVAAF QFGSDLDAATQALLNRGAR
Sbjct: 394 KLELAQYREVAAFAQFGSDLDAATQALLNRGAR 426

[Close]

BLAST of MS010314 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 42.7 bits (99), Expect = 6.5e-05
Identity = 22/33 (66.67%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 1   KLELAQYREVAAFVQFGSDLDAATQALLNRGAR 34
           KLELAQ+ E+ AF QF SDLD ATQ  L RG R
Sbjct: 384 KLELAQFAELEAFSQFSSDLDKATQNQLARGQR 416

The following BLAST results are available for this feature:

BLAST of MS010314 vs. NCBI nr


Match Name	E-value	Identity	Description
QJC70476.1	2.2e-07	96.97	ATP synthase F1 subunit 1, partial [Adenocalymma cymbalum]	[more]
ADR66843.1	2.2e-07	96.97	ATPase subunit 1, partial [Ternstroemia gymnanthera]	[more]
AUD38685.1	2.2e-07	96.97	ATP synthase F1 subunit 1 [Anthospermum spathulatum]	[more]
QHB79529.1	2.2e-07	96.97	ATPase subunit 1 [Sesuvium portulacastrum]	[more]
AAM95211.1	2.2e-07	96.97	ATPase F1 alpha subunit, partial [Luzula acuminata]	[more]

BLAST of MS010314 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92549	2.9e-10	96.97	ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATP...	[more]
Q06735	2.9e-10	96.97	ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=...	[more]
P68542	2.9e-10	96.97	ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA...	[more]
P22201	2.9e-10	96.97	ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3...	[more]
P05494	2.9e-10	96.97	ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1	[more]

BLAST of MS010314 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q9XPB2	1.1e-07	96.97	ATP synthase subunit alpha OS=Vigna radiata var. radiata OX=3916 GN=atp alpha PE...	[more]
M1G679	1.1e-07	96.97	ATP synthase subunit alpha (Fragment) OS=Gossypium hirsutum OX=3635 GN=atp1 PE=2...	[more]
A0A6U7JZ41	1.1e-07	96.97	ATP synthase subunit alpha OS=Haptolina brevifila OX=156173 GN=CBRE1094_LOCUS330...	[more]
A0A1B2ARU1	1.1e-07	96.97	ATP synthase subunit alpha OS=Stratiotes aloides OX=55494 GN=atp1 PE=3 SV=1	[more]
A0A1C9ZNX9	1.1e-07	96.97	ATP synthase subunit alpha OS=Hordeum vulgare subsp. spontaneum OX=77009 GN=atp1...	[more]

BLAST of MS010314 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07698.1	2.1e-11	96.97	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	2.1e-11	96.97	ATP synthase subunit 1	[more]
ATCG00120.1	6.5e-05	66.67	ATP synthase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000793	ATP synthase, alpha subunit, C-terminal	PFAM	PF00306	ATP-synt_ab_C	coord: 1..33 e-value: 1.1E-13 score: 51.6
IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	GENE3D	1.20.150.20		coord: 1..33 e-value: 4.9E-14 score: 54.4
None	No IPR available	SUPERFAMILY	47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010314.1	MS010314.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport