MS010294 (gene) Bitter gourd (TR) v1

Overview


Name	MS010294
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Gamma-tubulin complex component
Location	scaffold391: 1430230 .. 1430403 (+)
RNA-Seq Expression	MS010294
Synteny	MS010294

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATGTTTCCTGTCTGAAGAAACACAATCCGTGGCTGGTATCATTAATCAAATCTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGATACGTGGAATCCTCAAGTTGATAAAGCAGCTTTTTCGAGGAGACTTTCTTGGATCAACAAGTCCCAGGTAATCTGCACT

mRNA sequence

AGATGTTTCCTGTCTGAAGAAACACAATCCGTGGCTGGTATCATTAATCAAATCTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGATACGTGGAATCCTCAAGTTGATAAAGCAGCTTTTTCGAGGAGACTTTCTTGGATCAACAAGTCCCAGGTAATCTGCACT

Coding sequence (CDS)

AGATGTTTCCTGTCTGAAGAAACACAATCCGTGGCTGGTATCATTAATCAAATCTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGATACGTGGAATCCTCAAGTTGATAAAGCAGCTTTTTCGAGGAGACTTTCTTGGATCAACAAGTCCCAGGTAATCTGCACT

Protein sequence

RCFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVICT

Homology

[Close]

BLAST of MS010294 vs. NCBI nr
Match: XP_022153771.1 (uncharacterized protein LOC111021210 isoform X1 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSE+TQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQV+
Sbjct: 1092 CFLSEDTQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVL 1146

[Close]

BLAST of MS010294 vs. NCBI nr
Match: XP_022153772.1 (uncharacterized protein LOC111021210 isoform X2 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSE+TQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQV+
Sbjct: 1091 CFLSEDTQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVL 1145

[Close]

BLAST of MS010294 vs. NCBI nr
Match: KAG6605845.1 (Gamma-tubulin complex component 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSEET SVAGIINQILQCALDLRCCFTGD WN QVD AA SRRLS INKSQV+
Sbjct: 1114 CFLSEETLSVAGIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSEINKSQVL 1168

[Close]

BLAST of MS010294 vs. NCBI nr
Match: XP_023533555.1 (uncharacterized protein LOC111795389 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSEET SVAGIINQILQCALDLRCCFTGD WN QVD AA SRRLS INKSQV+
Sbjct: 1113 CFLSEETLSVAGIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSEINKSQVL 1167

[Close]

BLAST of MS010294 vs. NCBI nr
Match: XP_022958553.1 (uncharacterized protein LOC111459753 isoform X1 [Cucurbita moschata])

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSEET SVAGIINQILQCALDLRCCFTGD WN QVD AA SRRLS INKSQV+
Sbjct: 1112 CFLSEETLSVAGIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSEINKSQVL 1166

[Close]

BLAST of MS010294 vs. ExPASy TrEMBL
Match: A0A6J1DJV5 (uncharacterized protein LOC111021210 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021210 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSE+TQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQV+
Sbjct: 1091 CFLSEDTQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVL 1145

[Close]

BLAST of MS010294 vs. ExPASy TrEMBL
Match: A0A6J1DLQ0 (uncharacterized protein LOC111021210 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021210 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSE+TQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQV+
Sbjct: 1092 CFLSEDTQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVL 1146

[Close]

BLAST of MS010294 vs. ExPASy TrEMBL
Match: A0A6J1H3E0 (uncharacterized protein LOC111459753 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459753 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 48/55 (87.27%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSEET SVAGIINQILQCALDLRCCFTGD WN QVD AA SRRLS INKSQV+
Sbjct: 1112 CFLSEETLSVAGIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSEINKSQVL 1166

[Close]

BLAST of MS010294 vs. ExPASy TrEMBL
Match: A0A0A0L630 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185100 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-18
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  RCFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVICT 59
          RCFLSEETQSVA  INQ+LQCALDLRCCFTGD WN QVD AA SRRLS INK+Q  C+
Sbjct: 28 RCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQGKCS 85

[Close]

BLAST of MS010294 vs. ExPASy TrEMBL
Match: A0A6J1K7L9 (uncharacterized protein LOC111490907 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490907 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCFTGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLSEET SVAGIINQILQCALDLRCCFTGD WN QVD AA SRRLS INKS V+
Sbjct: 1112 CFLSEETLSVAGIINQILQCALDLRCCFTGDMWNTQVDNAASSRRLSEINKSLVL 1166

[Close]

BLAST of MS010294 vs. TAIR 10
Match: AT3G43610.1 (Spc97 / Spc98 family of spindle pole body (SBP) component )

HSP 1 Score: 47.4 bits (111), Expect = 4.6e-06
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 2    CFLSEETQSVAGIINQILQCALDLRCCF-TGDTWNPQVDKAAFSRRLSWINKSQVI 57
            CFLS+ETQ ++ II  ILQCALD R C   G     +V   ++++ L  IN SQV+
Sbjct: 1098 CFLSDETQIISNIIENILQCALDFRSCLPRGIQSTDRVPNDSWTKTLG-INTSQVM 1152

The following BLAST results are available for this feature:

BLAST of MS010294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153771.1	2.3e-23	96.36	uncharacterized protein LOC111021210 isoform X1 [Momordica charantia]	[more]
XP_022153772.1	2.3e-23	96.36	uncharacterized protein LOC111021210 isoform X2 [Momordica charantia]	[more]
KAG6605845.1	3.8e-18	87.27	Gamma-tubulin complex component 6, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023533555.1	3.8e-18	87.27	uncharacterized protein LOC111795389 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022958553.1	3.8e-18	87.27	uncharacterized protein LOC111459753 isoform X1 [Cucurbita moschata]	[more]

BLAST of MS010294 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJV5	1.1e-23	96.36	uncharacterized protein LOC111021210 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DLQ0	1.1e-23	96.36	uncharacterized protein LOC111021210 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1H3E0	1.8e-18	87.27	uncharacterized protein LOC111459753 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L630	9.1e-18	79.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185100 PE=4 SV=1	[more]
A0A6J1K7L9	1.2e-17	85.45	uncharacterized protein LOC111490907 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS010294 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G43610.1	4.6e-06	46.43	Spc97 / Spc98 family of spindle pole body (SBP) component	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010294.1	MS010294.1	mRNA