MS010260 (gene) Bitter gourd (TR) v1

Overview


Name	MS010260
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Senescence-associated protein, putative
Location	scaffold391: 1201068 .. 1201172 (-)
RNA-Seq Expression	MS010260
Synteny	MS010260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATTTATCATCTGATTGGGGCGGCATTCCCAAACAACATGACTTGTTGATAGCGCCTTGTGGTGCAATAGGGTCCGAGCATAATGGAGCTCTCACGCTCTCC

mRNA sequence

CAAAATTTATCATCTGATTGGGGCGGCATTCCCAAACAACATGACTTGTTGATAGCGCCTTGTGGTGCAATAGGGTCCGAGCATAATGGAGCTCTCACGCTCTCC

Coding sequence (CDS)

CAAAATTTATCATCTGATTGGGGCGGCATTCCCAAACAACATGACTTGTTGATAGCGCCTTGTGGTGCAATAGGGTCCGAGCATAATGGAGCTCTCACGCTCTCC

Protein sequence

QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS

Homology

[Close]

BLAST of MS010260 vs. NCBI nr
Match: KEH17028.1 (hypothetical protein MTR_0052s0140 [Medicago truncatula])

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1   QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
           +NL  DWG IPKQ D L AP GA GSEHNGALTLS
Sbjct: 202 RNLPPDWGCIPKQPDSLTAPRGATGSEHNGALTLS 236

[Close]

BLAST of MS010260 vs. NCBI nr
Match: KEH16990.1 (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1   QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
           +NL  DWG IPKQ D L AP GA GSEHNGALTLS
Sbjct: 96  RNLPPDWGCIPKQPDSLTAPRGATGSEHNGALTLS 130

[Close]

BLAST of MS010260 vs. NCBI nr
Match: XP_023520622.1 (uncharacterized protein LOC111784033 [Cucurbita pepo subsp. pepo] >XP_023522132.1 uncharacterized protein LOC111786016 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 26/35 (74.29%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 1   QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
           QNL  DWG IPKQ D L AP GA GSE NGALTLS
Sbjct: 106 QNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLS 140

[Close]

BLAST of MS010260 vs. NCBI nr
Match: XP_023552350.1 (uncharacterized protein LOC111810043 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 26/35 (74.29%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 1   QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
           QNL  DWG IPKQ D L AP GA GSE NGALTLS
Sbjct: 125 QNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLS 159

[Close]

BLAST of MS010260 vs. NCBI nr
Match: KAA0062869.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 26/35 (74.29%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 1  QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
          QNL  DWG IPKQ D L AP GA GSE NGALTLS
Sbjct: 63 QNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLS 97

[Close]

BLAST of MS010260 vs. ExPASy TrEMBL
Match: A0A072TTW3 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_0055s0080 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1   QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
           +NL  DWG IPKQ D L AP GA GSEHNGALTLS
Sbjct: 96  RNLPPDWGCIPKQPDSLTAPRGATGSEHNGALTLS 130

[Close]

BLAST of MS010260 vs. ExPASy TrEMBL
Match: A0A072TJI2 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0052s0140 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1   QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
           +NL  DWG IPKQ D L AP GA GSEHNGALTLS
Sbjct: 202 RNLPPDWGCIPKQPDSLTAPRGATGSEHNGALTLS 236

[Close]

BLAST of MS010260 vs. ExPASy TrEMBL
Match: A0A0A0L1K6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G243390 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.3e-05
Identity = 27/35 (77.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 1  QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
          QNL  DWG IPKQ D L AP GAIGSE NGALTLS
Sbjct: 14 QNLPPDWGCIPKQPDSLKAPHGAIGSERNGALTLS 48

[Close]

BLAST of MS010260 vs. ExPASy TrEMBL
Match: A0A6J1IK28 (uncharacterized protein LOC111475769 OS=Cucurbita maxima OX=3661 GN=LOC111475769 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 26/35 (74.29%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 1   QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
           QNL  DWG IPKQ D L AP GA GSE NGALTLS
Sbjct: 125 QNLPPDWGYIPKQPDSLTAPRGATGSERNGALTLS 159

[Close]

BLAST of MS010260 vs. ExPASy TrEMBL
Match: A0A5A7VB87 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold869G00010 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 26/35 (74.29%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 1  QNLSSDWGGIPKQHDLLIAPCGAIGSEHNGALTLS 36
          QNL  DWG IPKQ D L AP GA GSE NGALTLS
Sbjct: 63 QNLPPDWGCIPKQPDSLTAPRGATGSERNGALTLS 97

The following BLAST results are available for this feature:

BLAST of MS010260 vs. NCBI nr


Match Name	E-value	Identity	Description
KEH17028.1	8.4e-05	74.29	hypothetical protein MTR_0052s0140 [Medicago truncatula]	[more]
KEH16990.1	8.4e-05	74.29	transmembrane protein, putative [Medicago truncatula]	[more]
XP_023520622.1	2.5e-04	74.29	uncharacterized protein LOC111784033 [Cucurbita pepo subsp. pepo] >XP_023522132....	[more]
XP_023552350.1	2.5e-04	74.29	uncharacterized protein LOC111810043 [Cucurbita pepo subsp. pepo]	[more]
KAA0062869.1	2.5e-04	74.29	putative transmembrane protein [Cucumis melo var. makuwa]	[more]

BLAST of MS010260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A072TTW3	4.1e-05	74.29	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_0055s0080 ...	[more]
A0A072TJI2	4.1e-05	74.29	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0052s0140 PE=4 SV=...	[more]
A0A0A0L1K6	5.3e-05	77.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G243390 PE=4 SV=1	[more]
A0A6J1IK28	1.2e-04	74.29	uncharacterized protein LOC111475769 OS=Cucurbita maxima OX=3661 GN=LOC111475769...	[more]
A0A5A7VB87	1.2e-04	74.29	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of MS010260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010260.1	MS010260.1	mRNA