MS010244 (gene) Bitter gourd (TR) v1

Overview


Name	MS010244
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold391: 1109692 .. 1110044 (-)
RNA-Seq Expression	MS010244
Synteny	MS010244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTCCGGAGCTTTCAACTCCAACCAATCCGACGAATACTGGAGATTGCAAGGACAGGCCCCAAAAACCGCCTTTCAGACCTGCTAAAGATGACACCAAGCTTGTTCTCCAAGATCCGGTTCTCTCTCTCTCACTCAACTTAGCTCTTACTACCAATTCTTTCCTTCTAGTTTCATTCTTGAATTTTGTTGTATGAATGGTGCACGAAATTGACGGTTGTTCCTGTTTCTTTTCCCCCTCAATTGTTTTTGGTGGTAGATACGGAGGTCAGATCCAATTGAGACGGAGGAAGCCGTGCTCCGACCGCCTCCCTTCAATTTCTCTGTTCCCAAATCAAAGAGCCCTTCT

mRNA sequence

ATGAAAGCTCCGGAGCTTTCAACTCCAACCAATCCGACGAATACTGGAGATTGCAAGGACAGGCCCCAAAAACCGCCTTTCAGACCTGCTAAAGATGACACCAAGCTTGTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAGACGGAGGAAGCCGTGCTCCGACCGCCTCCCTTCAATTTCTCTGTTCCCAAATCAAAGAGCCCTTCT

Coding sequence (CDS)

ATGAAAGCTCCGGAGCTTTCAACTCCAACCAATCCGACGAATACTGGAGATTGCAAGGACAGGCCCCAAAAACCGCCTTTCAGACCTGCTAAAGATGACACCAAGCTTGTTCTCCAAGATCCGATACGGAGGTCAGATCCAATTGAGACGGAGGAAGCCGTGCTCCGACCGCCTCCCTTCAATTTCTCTGTTCCCAAATCAAAGAGCCCTTCT

Protein sequence

MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPFNFSVPKSKSPS

Homology

[Close]

BLAST of MS010244 vs. NCBI nr
Match: XP_022995760.1 (uncharacterized protein LOC111491196 [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          M+  ELSTPTNPTN  +CKDRP KPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF
Sbjct: 11 MRTSELSTPTNPTNAAECKDRPLKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 70

Query: 61 NFSVPKSKSPS 72
           FSV KSK+ S
Sbjct: 71 QFSVSKSKNSS 81

[Close]

BLAST of MS010244 vs. NCBI nr
Match: KAG7035826.1 (hypothetical protein SDJN02_02625 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-24
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          M+A ELSTPTNPT T +CKDRP+KPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MRASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60

Query: 61 NFSVPKSKSPS 72
           FSV +SK+ S
Sbjct: 61 QFSVSESKNSS 71

[Close]

BLAST of MS010244 vs. NCBI nr
Match: KAG6605875.1 (hypothetical protein SDJN03_03192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          M+A ELSTPTNPT T +CKDRP KPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MRASELSTPTNPTTTVECKDRPHKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60

Query: 61 NFSVPKSKSPS 72
           FSV +SK+ S
Sbjct: 61 QFSVSESKNSS 71

[Close]

BLAST of MS010244 vs. NCBI nr
Match: KGN54090.1 (hypothetical protein Csa_017904 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          MKA ELS   +P+NT +CK+RPQKPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MKASELS---SPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60

Query: 61 NFSVPKSKSPS 72
          +FS+PKSK+PS
Sbjct: 61 HFSLPKSKNPS 68

[Close]

BLAST of MS010244 vs. NCBI nr
Match: XP_016556081.1 (PREDICTED: uncharacterized protein LOC107855576 [Capsicum annuum])

HSP 1 Score: 77.4 bits (189), Expect = 5.5e-11
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          MKA E S  ++ TN  + K +  KPPFRPAKDDTK +LQDPI RSDPIETEEA+LR PPF
Sbjct: 4  MKADEESRKSSNTNKSEVK-KVTKPPFRPAKDDTKPLLQDPILRSDPIETEEALLRLPPF 63

Query: 61 NFSVPKSKS 70
              PKS+S
Sbjct: 64 PICKPKSQS 71

[Close]

BLAST of MS010244 vs. ExPASy TrEMBL
Match: A0A6J1K4U9 (uncharacterized protein LOC111491196 OS=Cucurbita maxima OX=3661 GN=LOC111491196 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          M+  ELSTPTNPTN  +CKDRP KPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF
Sbjct: 11 MRTSELSTPTNPTNAAECKDRPLKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 70

Query: 61 NFSVPKSKSPS 72
           FSV KSK+ S
Sbjct: 71 QFSVSKSKNSS 81

[Close]

BLAST of MS010244 vs. ExPASy TrEMBL
Match: A0A0A0KWV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280670 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          MKA ELS   +P+NT +CK+RPQKPPFRPAKDDTKL+LQDPIRRSDPIETEEAVLRPPPF
Sbjct: 1  MKASELS---SPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPF 60

Query: 61 NFSVPKSKSPS 72
          +FS+PKSK+PS
Sbjct: 61 HFSLPKSKNPS 68

[Close]

BLAST of MS010244 vs. ExPASy TrEMBL
Match: A0A1U8FBL6 (uncharacterized protein LOC107855576 OS=Capsicum annuum OX=4072 GN=LOC107855576 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MKAPELSTPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60
          MKA E S  ++ TN  + K +  KPPFRPAKDDTK +LQDPI RSDPIETEEA+LR PPF
Sbjct: 4  MKADEESRKSSNTNKSEVK-KVTKPPFRPAKDDTKPLLQDPILRSDPIETEEALLRLPPF 63

Query: 61 NFSVPKSKS 70
              PKS+S
Sbjct: 64 PICKPKSQS 71

[Close]

BLAST of MS010244 vs. ExPASy TrEMBL
Match: A0A1Q3CXU0 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28330 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-11
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1  MKAPELSTPTNP-TNTGDCK-DRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPP 60
          M+A E+S  +N  +N    K D+PQKPPFRPAKDDTK  L DP+ RSDPIETEEAVLR P
Sbjct: 1  MRATEISKKSNSNSNQSQLKTDKPQKPPFRPAKDDTKPALHDPLLRSDPIETEEAVLRLP 60

Query: 61 PFNFSVPKSKS 70
          PF    PK +S
Sbjct: 61 PFPVIKPKFQS 71

[Close]

BLAST of MS010244 vs. ExPASy TrEMBL
Match: A0A1U7ZV42 (uncharacterized protein LOC104597593 OS=Nelumbo nucifera OX=4432 GN=LOC104597593 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.7e-11
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 1  MKAPELSTPTNPT--NTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPP 60
          MK  E+   T+ +   T    D+PQKPPFRPAKDDTK +LQDPI RSDPIETEEAVLR P
Sbjct: 1  MKGSEILIKTSESEGETKSFSDKPQKPPFRPAKDDTKPILQDPILRSDPIETEEAVLRLP 60

Query: 61 PFNFSVPKSKS 70
          PF    PK KS
Sbjct: 61 PF----PKWKS 67

[Close]

BLAST of MS010244 vs. TAIR 10
Match: AT2G20480.1 (unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 8  TPTNPTNTGDCKDRPQKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 61
          TP  P  T     + QKPPFRPA DDTK VLQDPI RSDP+ETEEAVLR P F
Sbjct: 7  TPARPNAT----VKTQKPPFRPAVDDTKPVLQDPILRSDPMETEEAVLRLPSF 55

The following BLAST results are available for this feature:

BLAST of MS010244 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995760.1	2.5e-24	84.51	uncharacterized protein LOC111491196 [Cucurbita maxima]	[more]
KAG7035826.1	3.3e-24	84.51	hypothetical protein SDJN02_02625 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605875.1	4.3e-24	84.51	hypothetical protein SDJN03_03192, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54090.1	1.4e-22	81.69	hypothetical protein Csa_017904 [Cucumis sativus]	[more]
XP_016556081.1	5.5e-11	63.77	PREDICTED: uncharacterized protein LOC107855576 [Capsicum annuum]	[more]

BLAST of MS010244 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4U9	1.2e-24	84.51	uncharacterized protein LOC111491196 OS=Cucurbita maxima OX=3661 GN=LOC111491196...	[more]
A0A0A0KWV8	6.7e-23	81.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280670 PE=4 SV=1	[more]
A0A1U8FBL6	2.7e-11	63.77	uncharacterized protein LOC107855576 OS=Capsicum annuum OX=4072 GN=LOC107855576 ...	[more]
A0A1Q3CXU0	4.5e-11	61.97	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28330 PE=4...	[more]
A0A1U7ZV42	7.7e-11	63.38	uncharacterized protein LOC104597593 OS=Nelumbo nucifera OX=4432 GN=LOC104597593...	[more]

BLAST of MS010244 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20480.1	1.3e-10	67.92	unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR37207:SF2	BNAA09G43730D PROTEIN	coord: 8..62
None	No IPR available	PANTHER	PTHR37207	OS09G0446000 PROTEIN	coord: 8..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010244.1	MS010244.1	mRNA