MS010233 (gene) Bitter gourd (TR) v1

Overview


Name	MS010233
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	GATA transcription factor 29
Location	scaffold391: 1001515 .. 1002114 (-)
RNA-Seq Expression	MS010233
Synteny	MS010233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATCAGGTGGCCGCGGTGAACAATAATGTTGGGTTGGCGTCGTGCGGTGGGATGAGTGAAGCAAATTACAACCCTAACCAAATTTTATGGTCAAAAGAGCTGAAAACCTACGTTCTTAAGTCAAATAATCAAACTTCATTGGGTAGTCATGATCAAGTGAAGGGCAATATTGGCATTGGAAATGGCAGCACTACAAATAACTTGGCCAATGTTCCTCTTCAAACCAACAGCAACGACCTCTACACACTCCTCAACCCCGCTTCAAGATCAACAGATGATCACGAAGATGAAACTTCCTCCGGCAGCCGGCGGAAAGCTTCGCGGCGGCGTCGAGTCTCACACGACGAACCTGAAAAGAGGTGCACCAATTACAATTGCAACACTAATTTTACACCCATGTGGCGTAAAGGACCTCTAGGTCCCAAGGTATACGTAATTGATTTTTTTTTTTTAATAATAATGTGCATTAAATTAAAGCATAAACTAACAATCCAACGATAATATAATTATATGCAGAGCCTGTGCAATGCCTGCGGCATAAGGTATAGGAAGGAGTTGATGAATCGGGAGGCGATGACGGCAGAAAACAGCCACAAC

mRNA sequence

ATTAATCAGGTGGCCGCGGTGAACAATAATGTTGGGTTGGCGTCGTGCGGTGGGATGAGTGAAGCAAATTACAACCCTAACCAAATTTTATGGTCAAAAGAGCTGAAAACCTACGTTCTTAAGTCAAATAATCAAACTTCATTGGGTAGTCATGATCAAGTGAAGGGCAATATTGGCATTGGAAATGGCAGCACTACAAATAACTTGGCCAATGTTCCTCTTCAAACCAACAGCAACGACCTCTACACACTCCTCAACCCCGCTTCAAGATCAACAGATGATCACGAAGATGAAACTTCCTCCGGCAGCCGGCGGAAAGCTTCGCGGCGGCGTCGAGTCTCACACGACGAACCTGAAAAGAGGTGCACCAATTACAATTGCAACACTAATTTTACACCCATGTGGCGTAAAGGACCTCTAGGTCCCAAGAGCCTGTGCAATGCCTGCGGCATAAGGTATAGGAAGGAGTTGATGAATCGGGAGGCGATGACGGCAGAAAACAGCCACAAC

Coding sequence (CDS)

ATTAATCAGGTGGCCGCGGTGAACAATAATGTTGGGTTGGCGTCGTGCGGTGGGATGAGTGAAGCAAATTACAACCCTAACCAAATTTTATGGTCAAAAGAGCTGAAAACCTACGTTCTTAAGTCAAATAATCAAACTTCATTGGGTAGTCATGATCAAGTGAAGGGCAATATTGGCATTGGAAATGGCAGCACTACAAATAACTTGGCCAATGTTCCTCTTCAAACCAACAGCAACGACCTCTACACACTCCTCAACCCCGCTTCAAGATCAACAGATGATCACGAAGATGAAACTTCCTCCGGCAGCCGGCGGAAAGCTTCGCGGCGGCGTCGAGTCTCACACGACGAACCTGAAAAGAGGTGCACCAATTACAATTGCAACACTAATTTTACACCCATGTGGCGTAAAGGACCTCTAGGTCCCAAGAGCCTGTGCAATGCCTGCGGCATAAGGTATAGGAAGGAGTTGATGAATCGGGAGGCGATGACGGCAGAAAACAGCCACAAC

Protein sequence

INQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIGNGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN

Homology

[Close]

BLAST of MS010233 vs. NCBI nr
Match: XP_022153837.1 (GATA transcription factor 29 [Momordica charantia] >XP_022153838.1 GATA transcription factor 29 [Momordica charantia])

HSP 1 Score: 334.7 bits (857), Expect = 4.6e-88
Identity = 166/169 (98.22%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 2   NQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 61
           +QVAAVNNNVGL SCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG
Sbjct: 54  HQVAAVNNNVGLESCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 113

Query: 62  NGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRVSHDEPEKR 121
           NGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASR RRVSHDEPEKR
Sbjct: 114 NGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRLRRVSHDEPEKR 173

Query: 122 CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN 171
           CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN
Sbjct: 174 CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN 222

[Close]

BLAST of MS010233 vs. NCBI nr
Match: XP_022985849.1 (GATA zinc finger domain-containing protein 8-like [Cucurbita maxima])

HSP 1 Score: 215.3 bits (547), Expect = 4.0e-52
Identity = 118/171 (69.01%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 7   VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 66
           VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N    
Sbjct: 95  VNNNHGLASSGGRNGEMMSEANYNPHQIVWSKELKTYVLKSNNFGQL--HPSLYCNTYPA 154

Query: 67  N--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRVSH-DEP 126
              GST N+ AN+PLQ  +ND YTLLNPA R  DDHE E SSGSRR+  +RRRVS  +E 
Sbjct: 155 KTVGSTANSTANLPLQNYNNDQYTLLNPACRKADDHEAEASSGSRRRGLQRRRVSACNEV 214

Query: 127 EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
           E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Sbjct: 215 ERRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKEIMNKEAVAAENNH 263

[Close]

BLAST of MS010233 vs. NCBI nr
Match: XP_023513295.1 (putative GATA transcription factor 22 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 3.4e-51
Identity = 118/172 (68.60%), Postives = 133/172 (77.33%), Query Frame = 0


Query: 7   VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 66
           VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N    
Sbjct: 95  VNNNHGLASSGGRSGEMMSEANYNPHQIVWSKELKTYVLKSNNFGQL--HPSLYCNTYPA 154

Query: 67  N--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS-GSRRKASRRRRVSH-DE 126
              GST N++AN+PLQ  +ND YTLLNPA R TDDHE E SS G RR+  +RRRVS  +E
Sbjct: 155 KTIGSTANSMANLPLQNYNNDQYTLLNPACRKTDDHEAEASSGGGRRRGLQRRRVSACNE 214

Query: 127 PEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
            E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Sbjct: 215 VERRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKEIMNKEAVAAENNH 264

[Close]

BLAST of MS010233 vs. NCBI nr
Match: XP_023522473.1 (GATA transcription factor 21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 3.4e-51
Identity = 118/172 (68.60%), Postives = 133/172 (77.33%), Query Frame = 0


Query: 7   VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 66
           VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N    
Sbjct: 2   VNNNHGLASSGGRSGEMMSEANYNPHQIVWSKELKTYVLKSNNFGQL--HPSLYCNTYPA 61

Query: 67  N--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS-GSRRKASRRRRVSH-DE 126
              GST N++AN+PLQ  +ND YTLLNPA R TDDHE E SS G RR+  +RRRVS  +E
Sbjct: 62  KTIGSTANSMANLPLQNYNNDQYTLLNPACRKTDDHEAEASSGGGRRRGLQRRRVSACNE 121

Query: 127 PEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
            E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Sbjct: 122 VERRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKEIMNKEAVAAENNH 171

[Close]

BLAST of MS010233 vs. NCBI nr
Match: XP_022943672.1 (GATA zinc finger domain-containing protein 8-like [Cucurbita moschata])

HSP 1 Score: 211.5 bits (537), Expect = 5.8e-51
Identity = 118/172 (68.60%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 7   VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 66
           VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N    
Sbjct: 95  VNNNHGLASSGGRSGEMMSEANYNPHQIVWSKELKTYVLKSNNFGQL--HPSLYCNTYPA 154

Query: 67  N--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS-GSRRKASRRRRVSH-DE 126
              GST N + N+PLQ  +ND YTLLNPA R TDDHE E SS G RR+  +RRRVS  +E
Sbjct: 155 KTIGSTANGMPNLPLQNYNNDQYTLLNPACRKTDDHEAEASSGGGRRRGLQRRRVSACNE 214

Query: 127 PEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
            E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EAM AEN+H
Sbjct: 215 VERRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKEIMNKEAMAAENNH 264

[Close]

BLAST of MS010233 vs. ExPASy Swiss-Prot
Match: Q9LT45 (GATA transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=GATA29 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 79  NDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRV--------SHDEPEKRCTNYNCNTN 138
           +D Y L++  +R    +     + S ++ +  +R+           E  K+CTN NCN  
Sbjct: 108 SDEYVLIDVPARRARRNNSTVMTNSWKENATPKRIRGCGGFCGGRIEGMKKCTNMNCNAL 167

Query: 139 FTPMWRKGPLGPKSLCNACGIRYRKE 157
            TPMWR+GPLGPKSLCNACGI++RKE
Sbjct: 168 NTPMWRRGPLGPKSLCNACGIKFRKE 193

[Close]

BLAST of MS010233 vs. ExPASy Swiss-Prot
Match: Q6QPM2 (GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 115 HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENS 169
           H+   +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE   R A TA NS
Sbjct: 70  HNLLARRCA--NCDTTSTPLWRNGPRGPKSLCNACGIRFKKE--ERRASTARNS 119

[Close]

BLAST of MS010233 vs. ExPASy Swiss-Prot
Match: B8AX51 (GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 119 EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT 165
           ++RC   NC T  TP+WR GP GPKSLCNACGIRY+KE     A T
Sbjct: 151 DRRCA--NCGTASTPLWRNGPRGPKSLCNACGIRYKKEERRAAATT 194

[Close]

BLAST of MS010233 vs. ExPASy Swiss-Prot
Match: Q6L5E5 (GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-09
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 119 EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT 165
           ++RC   NC T  TP+WR GP GPKSLCNACGIRY+KE     A T
Sbjct: 151 DRRCA--NCGTASTPLWRNGPRGPKSLCNACGIRYKKEERRAAATT 194

[Close]

BLAST of MS010233 vs. ExPASy Swiss-Prot
Match: Q8LC79 (GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 120 KRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT 165
           +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE     A T
Sbjct: 152 RRCA--NCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 194

[Close]

BLAST of MS010233 vs. ExPASy TrEMBL
Match: A0A6J1DIM0 (GATA transcription factor 29 OS=Momordica charantia OX=3673 GN=LOC111021259 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.2e-88
Identity = 166/169 (98.22%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 2   NQVAAVNNNVGLASCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 61
           +QVAAVNNNVGL SCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG
Sbjct: 54  HQVAAVNNNVGLESCGGMSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 113

Query: 62  NGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRVSHDEPEKR 121
           NGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASR RRVSHDEPEKR
Sbjct: 114 NGSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRLRRVSHDEPEKR 173

Query: 122 CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN 171
           CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN
Sbjct: 174 CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSHN 222

[Close]

BLAST of MS010233 vs. ExPASy TrEMBL
Match: A0A6J1JEF0 (GATA zinc finger domain-containing protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111483776 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.0e-52
Identity = 118/171 (69.01%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 7   VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 66
           VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N    
Sbjct: 95  VNNNHGLASSGGRNGEMMSEANYNPHQIVWSKELKTYVLKSNNFGQL--HPSLYCNTYPA 154

Query: 67  N--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRVSH-DEP 126
              GST N+ AN+PLQ  +ND YTLLNPA R  DDHE E SSGSRR+  +RRRVS  +E 
Sbjct: 155 KTVGSTANSTANLPLQNYNNDQYTLLNPACRKADDHEAEASSGSRRRGLQRRRVSACNEV 214

Query: 127 EKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
           E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EA+ AEN+H
Sbjct: 215 ERRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKEIMNKEAVAAENNH 263

[Close]

BLAST of MS010233 vs. ExPASy TrEMBL
Match: A0A6J1FTP0 (GATA zinc finger domain-containing protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111448354 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.8e-51
Identity = 118/172 (68.60%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 7   VNNNVGLASCGG-----MSEANYNPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNIGIG 66
           VNNN GLAS GG     MSEANYNP+QI+WSKELKTYVLKSNN   L  H  +  N    
Sbjct: 95  VNNNHGLASSGGRSGEMMSEANYNPHQIVWSKELKTYVLKSNNFGQL--HPSLYCNTYPA 154

Query: 67  N--GSTTNNLANVPLQTNSNDLYTLLNPASRSTDDHEDETSS-GSRRKASRRRRVSH-DE 126
              GST N + N+PLQ  +ND YTLLNPA R TDDHE E SS G RR+  +RRRVS  +E
Sbjct: 155 KTIGSTANGMPNLPLQNYNNDQYTLLNPACRKTDDHEAEASSGGGRRRGLQRRRVSACNE 214

Query: 127 PEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
            E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE+MN+EAM AEN+H
Sbjct: 215 VERRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKEIMNKEAMAAENNH 264

[Close]

BLAST of MS010233 vs. ExPASy TrEMBL
Match: A0A5A7TDI3 (GATA transcription factor 29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00190 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 8.0e-46
Identity = 109/168 (64.88%), Postives = 125/168 (74.40%), Query Frame = 0


Query: 9   NNVGLASCGG-MSEANYNPNQILWSKELKTYVLKSNNQTSL--GSHDQVKGNI-GIGNGS 68
           NN GLA     MSE NYNP+QI+WSK+LKTYVLKSNN   L   S+         I   +
Sbjct: 71  NNQGLARNNEMMSEPNYNPHQIVWSKDLKTYVLKSNNYGQLHPSSYSTTTHQAKPIATST 130

Query: 69  TTNNLANVPL--QTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRVS-HDEPEKR 128
             N+  N+PL  + ++NDLYTLLNPASR +DDHE E SSG RRK SRRRR S  ++ E+R
Sbjct: 131 PNNSTPNLPLPKKGHNNDLYTLLNPASRISDDHEAEASSGGRRKGSRRRRASATNDVERR 190

Query: 129 CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
           CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE MN+EAM AENS+
Sbjct: 191 CTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKETMNKEAMAAENSN 238

[Close]

BLAST of MS010233 vs. ExPASy TrEMBL
Match: A0A0A0L0J0 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G286370 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.4e-45
Identity = 114/177 (64.41%), Postives = 127/177 (71.75%), Query Frame = 0


Query: 1   INQVAAVNNNVGLASCGG-MSEANY-NPNQILWSKELKTYVLKSNNQTSLGSHDQVKGNI 60
           +NQV A  NN GL      MSE NY NP+QI+WSK+LKTYVLKSNN      H     N 
Sbjct: 1   MNQVMA--NNQGLTRNNEMMSEPNYNNPHQIVWSKDLKTYVLKSNNNFGQQLHPSSYPNT 60

Query: 61  GIGN---GSTTNNLANVPL--QTNSNDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRV 120
                   ST NN  N+PL  + ++NDLYTLLNPASR  DDHE E SS  RRK SRRRRV
Sbjct: 61  HQAKPIPTSTPNNTPNLPLPKRGHNNDLYTLLNPASRVADDHEAEASSAGRRKGSRRRRV 120

Query: 121 S-HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENSH 170
           S  ++ E+RCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE MN+EAM AENS+
Sbjct: 121 SATNDVERRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKETMNKEAMAAENSN 175

[Close]

BLAST of MS010233 vs. TAIR 10
Match: AT3G20750.1 (GATA transcription factor 29 )

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 79  NDLYTLLNPASRSTDDHEDETSSGSRRKASRRRRV--------SHDEPEKRCTNYNCNTN 138
           +D Y L++  +R    +     + S ++ +  +R+           E  K+CTN NCN  
Sbjct: 108 SDEYVLIDVPARRARRNNSTVMTNSWKENATPKRIRGCGGFCGGRIEGMKKCTNMNCNAL 167

Query: 139 FTPMWRKGPLGPKSLCNACGIRYRKE 157
            TPMWR+GPLGPKSLCNACGI++RKE
Sbjct: 168 NTPMWRRGPLGPKSLCNACGIKFRKE 193

[Close]

BLAST of MS010233 vs. TAIR 10
Match: AT4G36620.1 (GATA transcription factor 19 )

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 115 HDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMTAENS 169
           H+   +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE   R A TA NS
Sbjct: 70  HNLLARRCA--NCDTTSTPLWRNGPRGPKSLCNACGIRFKKE--ERRASTARNS 119

[Close]

BLAST of MS010233 vs. TAIR 10
Match: AT3G50870.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 120 KRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKELMNREAMT 165
           +RC   NC+T  TP+WR GP GPKSLCNACGIR++KE     A T
Sbjct: 152 RRCA--NCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 194

[Close]

BLAST of MS010233 vs. TAIR 10
Match: AT2G18380.1 (GATA transcription factor 20 )

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 71  NVPLQTNSNDLYTLLNPASRSTDDHEDETSS-----------GSRRKASRRRR--VSHDE 130
           N    T+ +   +L  P++R  D H   +++           G   K S  ++  V+H  
Sbjct: 31  NFSSSTSVDCTLSLGTPSTRLDDHHRFSSANSNNISGDFYIHGGNAKTSSYKKGGVAHSL 90

Query: 131 PEKRCTNYNCNTNFTPMWRKGPLGPKSLCNACGIRYRKE 157
           P +RC   +C+T  TP+WR GP GPKSLCNACGIR++KE
Sbjct: 91  P-RRCA--SCDTTSTPLWRNGPKGPKSLCNACGIRFKKE 126

[Close]

BLAST of MS010233 vs. TAIR 10
Match: AT4G26150.1 (cytokinin-responsive gata factor 1 )

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 89  SRSTDDHEDETSSGSRRKASRRRRVSHDEPEKRCTNYNCNTNFTPMWRKGPLGPKSLCNA 148
           S S+  H +   S +   + R+   ++D   + C+  +CNT  TP+WR GP GPKSLCNA
Sbjct: 168 SDSSKQHTNNDQSSNLSNSERQNGYNNDCVIRICS--DCNTTKTPLWRSGPRGPKSLCNA 227

Query: 149 CGIRYRK 156
           CGIR RK
Sbjct: 228 CGIRQRK 232

The following BLAST results are available for this feature:

BLAST of MS010233 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153837.1	4.6e-88	98.22	GATA transcription factor 29 [Momordica charantia] >XP_022153838.1 GATA transcri...	[more]
XP_022985849.1	4.0e-52	69.01	GATA zinc finger domain-containing protein 8-like [Cucurbita maxima]	[more]
XP_023513295.1	3.4e-51	68.60	putative GATA transcription factor 22 [Cucurbita pepo subsp. pepo]	[more]
XP_023522473.1	3.4e-51	68.60	GATA transcription factor 21-like [Cucurbita pepo subsp. pepo]	[more]
XP_022943672.1	5.8e-51	68.60	GATA zinc finger domain-containing protein 8-like [Cucurbita moschata]	[more]

BLAST of MS010233 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LT45	8.0e-11	41.86	GATA transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=GATA29 PE=2 SV=1	[more]
Q6QPM2	3.0e-10	59.26	GATA transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=GATA19 PE=1 SV=2	[more]
B8AX51	3.4e-09	60.87	GATA transcription factor 15 OS=Oryza sativa subsp. indica OX=39946 GN=GATA15 PE...	[more]
Q6L5E5	3.4e-09	60.87	GATA transcription factor 15 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA15 ...	[more]
Q8LC79	7.5e-09	60.00	GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=1 SV=2	[more]

BLAST of MS010233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIM0	2.2e-88	98.22	GATA transcription factor 29 OS=Momordica charantia OX=3673 GN=LOC111021259 PE=4...	[more]
A0A6J1JEF0	2.0e-52	69.01	GATA zinc finger domain-containing protein 8-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1FTP0	2.8e-51	68.60	GATA zinc finger domain-containing protein 8-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A5A7TDI3	8.0e-46	64.88	GATA transcription factor 29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0L0J0	1.4e-45	64.41	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G286370 P...	[more]

BLAST of MS010233 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20750.1	5.7e-12	41.86	GATA transcription factor 29	[more]
AT4G36620.1	2.2e-11	59.26	GATA transcription factor 19	[more]
AT3G50870.1	5.3e-10	60.00	GATA type zinc finger transcription factor family protein	[more]
AT2G18380.1	1.7e-08	37.37	GATA transcription factor 20	[more]
AT4G26150.1	1.7e-08	44.78	cytokinin-responsive gata factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 116..168 e-value: 3.0E-10 score: 50.0
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 122..156 e-value: 6.7E-16 score: 57.6
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 126..170 score: 11.595688
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 126..155 e-value: 3.22461E-11 score: 53.9158
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 117..170 e-value: 9.8E-14 score: 53.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..104
None	No IPR available	PANTHER	PTHR45658	GATA TRANSCRIPTION FACTOR	coord: 73..163
None	No IPR available	PANTHER	PTHR45658:SF36	GATA TRANSCRIPTION FACTOR 17-RELATED	coord: 73..163
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 118..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010233.1	MS010233.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding