MS010194 (gene) Bitter gourd (TR) v1

Overview


Name	MS010194
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	heterogeneous nuclear ribonucleoprotein F
Location	scaffold391: 597672 .. 598448 (-)
RNA-Seq Expression	MS010194
Synteny	MS010194

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTTGACCACAGTTCATACGTTGATGGTGGCGATGGTCGTGAAATGGGTGCAAAGCGGCAACGGATAGTTGATCAGGGATCTTCTTATTACGGGACTTCTCCTGGTTCTGGTTTTATGTATAATACAAGTCCCTATGCATACGTTACTCAGCCACCACCGTTTCCTGTTGTCAGACTTCGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTGTTTTTGTGCACAAGAATGGTAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTACCCTCTGCAGGTTGATTTTGCCCTTCAGAGAAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGGCAGGAATACTACAAGGCTTTAGCAAATGAAGTATTCGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGCTGGTCGAAGCCAAACAACGAGGTGAAAGACTCTGCTGAACACACGGGTGTACTACGATTGAGGGGACTGCCATATTCGGCTGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCGGAGGACTTGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAGGCATTCGTCGAGTTCGCCAACGTGCAAGACTCGAAAGCAGCCATGGCCAAGGACAGAATGACGCTAGGTAGTCGATACATAGAGCTGTTCCCATCATCACAGGAAGAGCTCGACGAAGCAATCTCTAGAGGGCGG

mRNA sequence

TGTTTTGACCACAGTTCATACGTTGATGGTGGCGATGGTCGTGAAATGGGTGCAAAGCGGCAACGGATAGTTGATCAGGGATCTTCTTATTACGGGACTTCTCCTGGTTCTGGTTTTATGTATAATACAAGTCCCTATGCATACGTTACTCAGCCACCACCGTTTCCTGTTGTCAGACTTCGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTGTTTTTGTGCACAAGAATGGTAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTACCCTCTGCAGGTTGATTTTGCCCTTCAGAGAAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGGCAGGAATACTACAAGGCTTTAGCAAATGAAGTATTCGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGCTGGTCGAAGCCAAACAACGAGGTGAAAGACTCTGCTGAACACACGGGTGTACTACGATTGAGGGGACTGCCATATTCGGCTGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCGGAGGACTTGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAGGCATTCGTCGAGTTCGCCAACGTGCAAGACTCGAAAGCAGCCATGGCCAAGGACAGAATGACGCTAGGTAGTCGATACATAGAGCTGTTCCCATCATCACAGGAAGAGCTCGACGAAGCAATCTCTAGAGGGCGG

Coding sequence (CDS)

TGTTTTGACCACAGTTCATACGTTGATGGTGGCGATGGTCGTGAAATGGGTGCAAAGCGGCAACGGATAGTTGATCAGGGATCTTCTTATTACGGGACTTCTCCTGGTTCTGGTTTTATGTATAATACAAGTCCCTATGCATACGTTACTCAGCCACCACCGTTTCCTGTTGTCAGACTTCGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTGTTTTTGTGCACAAGAATGGTAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTACCCTCTGCAGGTTGATTTTGCCCTTCAGAGAAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGGCAGGAATACTACAAGGCTTTAGCAAATGAAGTATTCGATGCCCGGGGTGGTTCACCAAGAAGAACTGCACCCAGCTGGTCGAAGCCAAACAACGAGGTGAAAGACTCTGCTGAACACACGGGTGTACTACGATTGAGGGGACTGCCATATTCGGCTGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCGGAGGACTTGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAGGCATTCGTCGAGTTCGCCAACGTGCAAGACTCGAAAGCAGCCATGGCCAAGGACAGAATGACGCTAGGTAGTCGATACATAGAGCTGTTCCCATCATCACAGGAAGAGCTCGACGAAGCAATCTCTAGAGGGCGG

Protein sequence

CFDHSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLRGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIELFPSSQEELDEAISRGR

Homology

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BLAST of MS010194 vs. NCBI nr
Match: XP_022148687.1 (heterogeneous nuclear ribonucleoprotein F [Momordica charantia])

HSP 1 Score: 519.6 bits (1337), Expect = 1.5e-143
Identity = 253/258 (98.06%), Postives = 255/258 (98.84%), Query Frame = 0


Query: 2   FDHSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLR 61
           F   SYVDGG+GREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLR
Sbjct: 2   FYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLR 61

Query: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121
           GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR
Sbjct: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121

Query: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181
           YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS
Sbjct: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181

Query: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241
           AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI
Sbjct: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241

Query: 242 ELFPSSQEELDEAISRGR 260
           ELFPSSQEELDEAISRGR
Sbjct: 242 ELFPSSQEELDEAISRGR 259

[Close]

BLAST of MS010194 vs. NCBI nr
Match: TYJ96136.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 489.6 bits (1259), Expect = 1.7e-134
Identity = 240/256 (93.75%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 4   HSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLRGL 63
           H SY DGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV QPPPFPVVRLRGL
Sbjct: 97  HLSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 156

Query: 64  PFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123
           PFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV
Sbjct: 157 PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 216

Query: 124 EIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAG 183
           EIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPYSAG
Sbjct: 217 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPYSAG 276

Query: 184 KDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIEL 243
           KDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYIEL
Sbjct: 277 KDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIEL 336

Query: 244 FPSSQEELDEAISRGR 260
           FPSS EELDEAISRGR
Sbjct: 337 FPSSHEELDEAISRGR 351

[Close]

BLAST of MS010194 vs. NCBI nr
Match: KAA0041416.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 489.6 bits (1259), Expect = 1.7e-134
Identity = 240/256 (93.75%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 4   HSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLRGL 63
           H SY DGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV QPPPFPVVRLRGL
Sbjct: 56  HLSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 115

Query: 64  PFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123
           PFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV
Sbjct: 116 PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 175

Query: 124 EIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAG 183
           EIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPYSAG
Sbjct: 176 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPYSAG 235

Query: 184 KDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIEL 243
           KDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYIEL
Sbjct: 236 KDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIEL 295

Query: 244 FPSSQEELDEAISRGR 260
           FPSS EELDEAISRGR
Sbjct: 296 FPSSHEELDEAISRGR 310

[Close]

BLAST of MS010194 vs. NCBI nr
Match: XP_004142112.1 (heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_018007 [Cucumis sativus])

HSP 1 Score: 488.8 bits (1257), Expect = 2.9e-134
Identity = 240/258 (93.02%), Postives = 246/258 (95.35%), Query Frame = 0


Query: 2   FDHSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLR 61
           F   SY DGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV QPPPFPVVRLR
Sbjct: 4   FYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLR 63

Query: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121
           GLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR
Sbjct: 64  GLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 123

Query: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181
           YVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPYS
Sbjct: 124 YVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPYS 183

Query: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241
           AGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYI
Sbjct: 184 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 243

Query: 242 ELFPSSQEELDEAISRGR 260
           ELFPSS EELDEAISRGR
Sbjct: 244 ELFPSSHEELDEAISRGR 260

[Close]

BLAST of MS010194 vs. NCBI nr
Match: XP_038901811.1 (heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida])

HSP 1 Score: 485.0 bits (1247), Expect = 4.2e-133
Identity = 238/258 (92.25%), Postives = 244/258 (94.57%), Query Frame = 0


Query: 2   FDHSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLR 61
           F   SY DGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYAYV QPPPFPVVRLR
Sbjct: 4   FYRGSYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYAYVNQPPPFPVVRLR 63

Query: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121
           GLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR
Sbjct: 64  GLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 123

Query: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181
           YVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKD AEHTGVLRLRGLPYS
Sbjct: 124 YVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDCAEHTGVLRLRGLPYS 183

Query: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241
           AGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYI
Sbjct: 184 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 243

Query: 242 ELFPSSQEELDEAISRGR 260
           ELFPSS EELDEAISRGR
Sbjct: 244 ELFPSSHEELDEAISRGR 260

[Close]

BLAST of MS010194 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 76/200 (38.00%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD----IVFVH-KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of MS010194 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 76/200 (38.00%), Postives = 117/200 (58.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD----IVFVH-KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of MS010194 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-27
Identity = 76/200 (38.00%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD-IVFVH----KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of MS010194 vs. ExPASy Swiss-Prot
Match: Q794E4 (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-27
Identity = 76/200 (38.00%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD-IVFVH----KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   DSA + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADSA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of MS010194 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-27
Identity = 75/200 (37.50%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVAEFFHGLDIVD-IVFVH----KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     I D +  VH    + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 117 QRNRQNMGRRYVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTG 176
           +++R++MG RY+E+F+S+R E    L +                 S PN+   D+A + G
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVLKH-----------------SGPNS--ADTA-NDG 131

Query: 177 VLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAK 236
            +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+ + ++ A+ K
Sbjct: 132 FVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 191

Query: 237 DRMTLGSRYIELFPSSQEEL 252
            +  +G RYIE+F SSQEE+
Sbjct: 192 HKERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of MS010194 vs. ExPASy TrEMBL
Match: A0A6J1D5R6 (heterogeneous nuclear ribonucleoprotein F OS=Momordica charantia OX=3673 GN=LOC111017289 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 7.4e-144
Identity = 253/258 (98.06%), Postives = 255/258 (98.84%), Query Frame = 0


Query: 2   FDHSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLR 61
           F   SYVDGG+GREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLR
Sbjct: 2   FYRGSYVDGGNGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLR 61

Query: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121
           GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR
Sbjct: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121

Query: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181
           YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS
Sbjct: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181

Query: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241
           AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI
Sbjct: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241

Query: 242 ELFPSSQEELDEAISRGR 260
           ELFPSSQEELDEAISRGR
Sbjct: 242 ELFPSSQEELDEAISRGR 259

[Close]

BLAST of MS010194 vs. ExPASy TrEMBL
Match: A0A5A7TH86 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00630 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 8.2e-135
Identity = 240/256 (93.75%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 4   HSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLRGL 63
           H SY DGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV QPPPFPVVRLRGL
Sbjct: 56  HLSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 115

Query: 64  PFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123
           PFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV
Sbjct: 116 PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 175

Query: 124 EIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAG 183
           EIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPYSAG
Sbjct: 176 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPYSAG 235

Query: 184 KDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIEL 243
           KDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYIEL
Sbjct: 236 KDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIEL 295

Query: 244 FPSSQEELDEAISRGR 260
           FPSS EELDEAISRGR
Sbjct: 296 FPSSHEELDEAISRGR 310

[Close]

BLAST of MS010194 vs. ExPASy TrEMBL
Match: A0A5D3BB71 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001040 PE=4 SV=1)

HSP 1 Score: 489.6 bits (1259), Expect = 8.2e-135
Identity = 240/256 (93.75%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 4   HSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLRGL 63
           H SY DGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV QPPPFPVVRLRGL
Sbjct: 97  HLSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGL 156

Query: 64  PFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123
           PFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV
Sbjct: 157 PFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 216

Query: 124 EIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAG 183
           EIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPYSAG
Sbjct: 217 EIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPYSAG 276

Query: 184 KDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIEL 243
           KDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYIEL
Sbjct: 277 KDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIEL 336

Query: 244 FPSSQEELDEAISRGR 260
           FPSS EELDEAISRGR
Sbjct: 337 FPSSHEELDEAISRGR 351

[Close]

BLAST of MS010194 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.4e-134
Identity = 240/258 (93.02%), Postives = 246/258 (95.35%), Query Frame = 0


Query: 2   FDHSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLR 61
           F   SY DGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV QPPPFPVVRLR
Sbjct: 4   FYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLR 63

Query: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121
           GLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR
Sbjct: 64  GLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 123

Query: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181
           YVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPYS
Sbjct: 124 YVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPYS 183

Query: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241
           AGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYI
Sbjct: 184 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 243

Query: 242 ELFPSSQEELDEAISRGR 260
           ELFPSS EELDEAISRGR
Sbjct: 244 ELFPSSHEELDEAISRGR 260

[Close]

BLAST of MS010194 vs. ExPASy TrEMBL
Match: A0A1S3BMM3 (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.4e-134
Identity = 240/258 (93.02%), Postives = 246/258 (95.35%), Query Frame = 0


Query: 2   FDHSSYVDGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVTQPPPFPVVRLR 61
           F   SY DGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV QPPPFPVVRLR
Sbjct: 4   FYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLR 63

Query: 62  GLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 121
           GLPFDCMETDV EFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR
Sbjct: 64  GLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRR 123

Query: 122 YVEIFRSNRQEYYKALANEVFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYS 181
           YVEIFRSNRQEYYKA+ANEVFDARGGSPRR+AP  SK N+EVKDSAEHTGVLRLRGLPYS
Sbjct: 124 YVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR-SKLNDEVKDSAEHTGVLRLRGLPYS 183

Query: 182 AGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYI 241
           AGKDDILDFFKGFNLSED IHLTLNSEGRPSGEAFVEF+N QDSKAAM+KDRMTLGSRYI
Sbjct: 184 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 243

Query: 242 ELFPSSQEELDEAISRGR 260
           ELFPSS EELDEAISRGR
Sbjct: 244 ELFPSSHEELDEAISRGR 260

[Close]

BLAST of MS010194 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 359.0 bits (920), Expect = 3.2e-99
Identity = 180/292 (61.64%), Postives = 212/292 (72.60%), Query Frame = 0


Query: 4   HSSYVDGGDGREMGAKRQRIVDQG--SSYYGTSPGSGFMYNTSPYAYVT--QPPPFPVVR 63
           +  Y DG DGREMG KRQR++DQG    +YG  P SGFMYN  PY +V    PPPFP VR
Sbjct: 3   YRGYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFPAVR 62

Query: 64  LRGLPFDCMETDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMG 123
           LRGLPFDC E DV EFFHGLD+VD++FVH+N K TGE FCVLGYPLQVDFALQ+NRQNMG
Sbjct: 63  LRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMG 122

Query: 124 RRYVEIFRSNRQEYYKALANEVFDAR--------------------------------GG 183
           RRYVE+FRS +QEYYKA+ANEV ++R                                GG
Sbjct: 123 RRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGG 182

Query: 184 SPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNS 243
           S  R     ++ +++ K+  EHTG+LRLRGLP+SAGK+DILDFFK F LSED +H+T+N 
Sbjct: 183 SSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNG 242

Query: 244 EGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIELFPSSQEELDEAISRGR 260
           EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 243 EGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of MS010194 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-59
Identity = 122/256 (47.66%), Postives = 173/256 (67.58%), Query Frame = 0


Query: 10  GGDGREMGAKRQRIVDQGSSY--YGTSPGSGFMYNTSPYAYVTQPPPFPVVRLRGLPFDC 69
           G  G E+G+KRQR++ Q + Y   GT P S       P+ Y      FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS-----FPPFGYA---GGFPVVRLRGLPFNC 69

Query: 70  METDVAEFFHGLDIVDIVFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFR 129
            + D+ EFF GL+IVD++ V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 130 SNRQEYYKALANE----VFDARGGSPRRTAPSWSKPNNEVKDSAEHTGVLRLRGLPYSAG 189
            ++Q+YY A+A E     ++ R  SP  T PS +K  +E K+  E+T VL++RGLPYS  
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVR-ASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVN 189

Query: 190 KDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFANVQDSKAAMAKDRMTLGSRYIEL 249
           K  I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AMAKD+M++GSRY+EL
Sbjct: 190 KPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVEL 249

Query: 250 FPSSQEELDEAISRGR 260
           FP+++EE   A +R R
Sbjct: 250 FPTTREEARRAEARSR 254

[Close]

BLAST of MS010194 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 74/159 (46.54%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 105 LQVDFALQRNRQNMGRRYVEIFRSNRQEYYKALANE----VFDARGGSPRRTAPSWSKPN 164
           +QV+ ALQR+R NMGRRYVE+FR ++Q+YY A+A E     ++ R  SP  T PS +K  
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVR-ASPPPTGPSRAKRF 60

Query: 165 NEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPSGEAFVEFA 224
           +E K+  E+T VL++RGLPYS  K  I++FF G+ + +  + +    +G+ +GEAFVEF 
Sbjct: 61  SE-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFE 120

Query: 225 NVQDSKAAMAKDRMTLGSRYIELFPSSQEELDEAISRGR 260
             ++++ AMAKD+M++GSRY+ELFP+++EE   A +R R
Sbjct: 121 TGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]

BLAST of MS010194 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 42.0 bits (97), Expect = 8.7e-04
Identity = 25/99 (25.25%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 157 SKPNNEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDLIHLTLNSEGRPS-GEA 216
           ++ +  V D    TG L +R LPY+A ++++++ F  F    + +HL L+ E + S G A
Sbjct: 280 AQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE-VHLVLDKETKRSRGIA 339

Query: 217 FVEFANVQDSKAAMAK-DRMTLGSRYIELFPSSQEELDE 254
           ++ +   + +  AM + D  +   R + + P+   E  +
Sbjct: 340 YILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

The following BLAST results are available for this feature:

BLAST of MS010194 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148687.1	1.5e-143	98.06	heterogeneous nuclear ribonucleoprotein F [Momordica charantia]	[more]
TYJ96136.1	1.7e-134	93.75	heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0041416.1	1.7e-134	93.75	heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa]	[more]
XP_004142112.1	2.9e-134	93.02	heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PRED...	[more]
XP_038901811.1	4.2e-133	92.25	heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida]	[more]

BLAST of MS010194 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52597	4.9e-28	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	4.9e-28	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9Z2X1	4.2e-27	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]
Q794E4	4.2e-27	38.00	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp...	[more]
Q5E9J1	5.5e-27	37.50	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]

BLAST of MS010194 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5R6	7.4e-144	98.06	heterogeneous nuclear ribonucleoprotein F OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5A7TH86	8.2e-135	93.75	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A5D3BB71	8.2e-135	93.75	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A0A0L205	1.4e-134	93.02	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV...	[more]
A0A1S3BMM3	1.4e-134	93.02	heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150...	[more]

BLAST of MS010194 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	3.2e-99	61.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	1.5e-59	47.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	1.1e-35	46.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	8.7e-04	25.25	nucleotide binding;nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 57..126 e-value: 0.077 score: 16.5 coord: 172..244 e-value: 1.7E-8 score: 44.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 174..241 e-value: 1.3E-9 score: 37.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 171..248 score: 9.79736
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 155..258 e-value: 3.5E-29 score: 102.9 coord: 44..143 e-value: 2.8E-20 score: 74.2
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 6..259
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..259
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 172..244 e-value: 1.26551E-29 score: 104.561
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 57..126 e-value: 1.48974E-21 score: 83.3755
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..135
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 159..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010194.1	MS010194.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding