MS010193 (gene) Bitter gourd (TR) v1

Overview


Name	MS010193
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transmembrane protein
Location	scaffold391: 595295 .. 595468 (+)
RNA-Seq Expression	MS010193
Synteny	MS010193

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGCAGCGCGAAGAAGAAGAAGAGCTCTAATTCCGGAGGGGCAAAAAAGGCAATTGGCGATCGCCGGAAAGAGCAATCGGAAACGGGTCTTTGCTTCTTCGGCGCCGGCGGGCATGTTACAATCTCCGGAATTCTGAATCTCTCTGCTCTCGGCGTGCTGCAGCCGCCG

mRNA sequence

ATGTCCGGCAGCGCGAAGAAGAAGAAGAGCTCTAATTCCGGAGGGGCAAAAAAGGCAATTGGCGATCGCCGGAAAGAGCAATCGGAAACGGGTCTTTGCTTCTTCGGCGCCGGCGGGCATGTTACAATCTCCGGAATTCTGAATCTCTCTGCTCTCGGCGTGCTGCAGCCGCCG

Coding sequence (CDS)

ATGTCCGGCAGCGCGAAGAAGAAGAAGAGCTCTAATTCCGGAGGGGCAAAAAAGGCAATTGGCGATCGCCGGAAAGAGCAATCGGAAACGGGTCTTTGCTTCTTCGGCGCCGGCGGGCATGTTACAATCTCCGGAATTCTGAATCTCTCTGCTCTCGGCGTGCTGCAGCCGCCG

Protein sequence

MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP

Homology

[Close]

BLAST of MS010193 vs. NCBI nr
Match: XP_016900741.1 (PREDICTED: uncharacterized protein LOC107991009 [Cucumis melo] >KAA0041417.1 transmembrane protein [Cucumis melo var. makuwa] >TYJ96135.1 transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-14
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2  SGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          +G A KKKSSNSGGAKKA+GDRR EQSET L FFGAGGHV ISGIL LSA GVLQPP
Sbjct: 4  TGKATKKKSSNSGGAKKAMGDRRNEQSETALGFFGAGGHVRISGILCLSAFGVLQPP 60

[Close]

BLAST of MS010193 vs. NCBI nr
Match: QHO18661.1 (uncharacterized protein DS421_11g322430 [Arachis hypogaea])

HSP 1 Score: 64.7 bits (156), Expect = 3.0e-07
Identity = 37/55 (67.27%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 7  KKKSSNSGGAKKAIGDRRKEQ---SETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          KKK S SGG K   GDRRKEQ    E  LCFFGAGGHV ISGILN S  GV Q P
Sbjct: 2  KKKRSKSGGEKNESGDRRKEQFEDDEITLCFFGAGGHVEISGILNFSPFGVEQQP 56

[Close]

BLAST of MS010193 vs. NCBI nr
Match: QHO48225.1 (uncharacterized protein DS421_1g03730 [Arachis hypogaea])

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 36/55 (65.45%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 7  KKKSSNSGGAKKAIGDRRKEQ---SETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          KKK S SGG K   GD RKEQ    E  LCFFGAGGHV ISGILN S  GV Q P
Sbjct: 2  KKKRSKSGGEKNESGDLRKEQFEDDEITLCFFGAGGHVEISGILNFSPFGVEQQP 56

[Close]

BLAST of MS010193 vs. NCBI nr
Match: CAD5323680.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 5  AKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          A  KKSS SGGAKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 13 ALTKKSSISGGAKKTICLRRNTQFFETLCFFGAGGHVSISGILDFLAFGVQQPP 66

[Close]

BLAST of MS010193 vs. NCBI nr
Match: GFY96234.1 (hypothetical protein Acr_11g0005400 [Actinidia rufa])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 34/57 (59.65%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 1  MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQP 58
          MS +A KKKSS SGG K AIG+ R E     L FFG  GH  ISG LNL A GV QP
Sbjct: 1  MSRNANKKKSSISGGEKAAIGELRSENLAATLFFFGGSGHDKISGNLNLFAFGVEQP 57

[Close]

BLAST of MS010193 vs. ExPASy TrEMBL
Match: A0A5D3BCF0 (Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001030 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2  SGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          +G A KKKSSNSGGAKKA+GDRR EQSET L FFGAGGHV ISGIL LSA GVLQPP
Sbjct: 4  TGKATKKKSSNSGGAKKAMGDRRNEQSETALGFFGAGGHVRISGILCLSAFGVLQPP 60

[Close]

BLAST of MS010193 vs. ExPASy TrEMBL
Match: A0A1S4DXN3 (uncharacterized protein LOC107991009 OS=Cucumis melo OX=3656 GN=LOC107991009 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-14
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2  SGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          +G A KKKSSNSGGAKKA+GDRR EQSET L FFGAGGHV ISGIL LSA GVLQPP
Sbjct: 4  TGKATKKKSSNSGGAKKAMGDRRNEQSETALGFFGAGGHVRISGILCLSAFGVLQPP 60

[Close]

BLAST of MS010193 vs. ExPASy TrEMBL
Match: A0A7G2EN36 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS11614 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 5  AKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          A  KKSS SGGAKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 13 ALTKKSSISGGAKKTICLRRNTQFFETLCFFGAGGHVSISGILDFLAFGVQQPP 66

[Close]

BLAST of MS010193 vs. ExPASy TrEMBL
Match: A0A7J0FBZ7 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_11g0005400 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 34/57 (59.65%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 1  MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQP 58
          MS +A KKKSS SGG K AIG+ R E     L FFG  GH  ISG LNL A GV QP
Sbjct: 1  MSRNANKKKSSISGGEKAAIGELRSENLAATLFFFGGSGHDKISGNLNLFAFGVEQP 57

[Close]

BLAST of MS010193 vs. ExPASy TrEMBL
Match: D7KZY0 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_479617 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 16 AKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          AKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 29 AKKTICLRRNTQFFVTLCFFGAGGHVSISGILDFLAFGVQQPP 71

[Close]

BLAST of MS010193 vs. TAIR 10
Match: AT3G20900.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1  MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 59
          M+  A+K K+S    AKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 1  MNKVARKNKTS----AKKTICLRRNTQFFETLCFFGAGGHVSISGILDFLAFGVQQPP 54

The following BLAST results are available for this feature:

BLAST of MS010193 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900741.1	5.7e-14	82.46	PREDICTED: uncharacterized protein LOC107991009 [Cucumis melo] >KAA0041417.1 tra...	[more]
QHO18661.1	3.0e-07	67.27	uncharacterized protein DS421_11g322430 [Arachis hypogaea]	[more]
QHO48225.1	2.0e-06	65.45	uncharacterized protein DS421_1g03730 [Arachis hypogaea]	[more]
CAD5323680.1	2.5e-06	66.67	unnamed protein product [Arabidopsis thaliana]	[more]
GFY96234.1	3.1e-04	59.65	hypothetical protein Acr_11g0005400 [Actinidia rufa]	[more]

BLAST of MS010193 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010193 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCF0	2.7e-14	82.46	Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18...	[more]
A0A1S4DXN3	2.7e-14	82.46	uncharacterized protein LOC107991009 OS=Cucumis melo OX=3656 GN=LOC107991009 PE=...	[more]
A0A7G2EN36	1.2e-06	66.67	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC...	[more]
A0A7J0FBZ7	1.5e-04	59.65	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_11g0005400 PE=4 SV=1	[more]
D7KZY0	2.6e-04	65.12	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

BLAST of MS010193 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20900.1	1.4e-07	56.90	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010193.1	MS010193.1	mRNA