MS010188 (gene) Bitter gourd (TR) v1

Overview


Name	MS010188
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosystem II 5 kDa protein, chloroplastic
Location	scaffold391: 574691 .. 575011 (+)
RNA-Seq Expression	MS010188
Synteny	MS010188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCACCGCAATCGCAGCCTCCTTCCTCCCCTTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGACGCGTCCAAGCCCAACTTGGAGATGAAGAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGTCGCCGTGACGGTGGCTGCGGCCACCTTGGCCAAGGCGGCGATGGCGGACGAGCCGAAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGCAAC

mRNA sequence

ATGGCGTCCACCGCAATCGCAGCCTCCTTCCTCCCCTTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGACGCGTCCAAGCCCAACTTGGAGATGAAGAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGTCGCCGTGACGGTGGCTGCGGCCACCTTGGCCAAGGCGGCGATGGCGGACGAGCCGAAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGCAAC

Coding sequence (CDS)

ATGGCGTCCACCGCAATCGCAGCCTCCTTCCTCCCCTTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGACGCGTCCAAGCCCAACTTGGAGATGAAGAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGTCGCCGTGACGGTGGCTGCGGCCACCTTGGCCAAGGCGGCGATGGCGGACGAGCCGAAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGCAAC

Protein sequence

MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN

Homology

[Close]

BLAST of MS010188 vs. NCBI nr
Match: XP_022148791.1 (photosystem II 5 kDa protein, chloroplastic [Momordica charantia])

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-44
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRREL 60
           MASTAIAASFLP TAKHPSAATRRALIVAKASAAANDASKPNLEM RSVQVESWQGRREL
Sbjct: 1   MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRREL 60

Query: 61  VAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN 108
           VA AVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN
Sbjct: 61  VAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN 107

[Close]

BLAST of MS010188 vs. NCBI nr
Match: XP_038901593.1 (photosystem II 5 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 82/107 (76.64%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRE 60
           MAS A+ ASFLP TA K PS A RRAL+VAKAS  ++DAS  NLE+K +V+VE+ QGRRE
Sbjct: 1   MASMAMTASFLPATANKQPSTAARRALVVAKAS-TSSDASNVNLEIK-NVKVENRQGRRE 60

Query: 61  LVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           LVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTMPTARICR
Sbjct: 61  LVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICR 105

[Close]

BLAST of MS010188 vs. NCBI nr
Match: XP_008449703.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA0041421.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa] >TYJ96132.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRE 60
           MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+K +V+VES QGRRE
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKAS-TSNETSNVNLEVK-NVKVESRQGRRE 112

Query: 61  LVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           LVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTMPTARICR
Sbjct: 113 LVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICR 157

[Close]

BLAST of MS010188 vs. NCBI nr
Match: XP_022944588.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-27
Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQG 60
           MAS +I ASFLPFTA  PS AA RRAL V KA  SAAA D+ S  NLE+K +V+VES QG
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIK-NVKVESSQG 60

Query: 61  RRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           RRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP+CVTMPTARICR
Sbjct: 61  RRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICR 109

[Close]

BLAST of MS010188 vs. NCBI nr
Match: KAG6570402.1 (Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010275.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 6.3e-27
Identity = 85/112 (75.89%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPS---AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESW 60
           MAS +I ASFLPFTA  PS   AA RRAL V KA  SAAA D+ S  NLE+K +V+VES 
Sbjct: 1   MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIK-NVKVESS 60

Query: 61  QGRRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           QGRRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP+CVTMPTARICR
Sbjct: 61  QGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICR 111

[Close]

BLAST of MS010188 vs. ExPASy Swiss-Prot
Match: Q39195 (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBT PE=3 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 54/108 (50.00%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRREL 60
           MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+K   +  S   RR+L
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRRLSVVRASTSDN---TPSLEVK---EQSSTTMRRDL 60

Query: 61  VAVAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVTMPTARICR 107
           +  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVTMPTA+ICR
Sbjct: 61  MFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

[Close]

BLAST of MS010188 vs. ExPASy Swiss-Prot
Match: P31336 (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 1   MASTAIAASFLPFT--AKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRR 60
           MAS  +  SFL  T   K     T+R L+VA    AA  A   +++M    + E   GRR
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRRLVVAN---AAKGAQVESVQMSGERKTEGNNGRR 60

Query: 61  ELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN 108
           E++  A   A  ++A  A A EPKRGSAEAK+ YAPVCVTMPTARICRN
Sbjct: 61  EMMFAAAAAAICSVAGVATA-EPKRGSAEAKKAYAPVCVTMPTARICRN 105

[Close]

BLAST of MS010188 vs. ExPASy Swiss-Prot
Match: B3EWI4 (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 51/112 (45.54%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPS---AATRRALIVAKA--SAAANDASKPNLEMKRSVQVESWQ 60
           MAS  + +SFL  +   P+   +A RR +++ KA      N     N E K S       
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPSANRRGVVMVKAMHEGENNVVISKNEESKNS------- 60

Query: 61  GRRELVAVAVTVAAATLAKAAMAD-EPKRGSAEAKQKYAPVCVTMPTARICR 107
           GRREL       AA ++AK AMAD EPKRG+ EAK+KY+ VCVT PTARICR
Sbjct: 61  GRRELFFAMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTARICR 105

[Close]

BLAST of MS010188 vs. ExPASy TrEMBL
Match: A0A6J1D6G0 (photosystem II 5 kDa protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017359 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRREL 60
           MASTAIAASFLP TAKHPSAATRRALIVAKASAAANDASKPNLEM RSVQVESWQGRREL
Sbjct: 1   MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRREL 60

Query: 61  VAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN 108
           VA AVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN
Sbjct: 61  VAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICRN 107

[Close]

BLAST of MS010188 vs. ExPASy TrEMBL
Match: A0A5A7TID9 (Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00980 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.0e-28
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRE 60
           MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+K +V+VES QGRRE
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKAS-TSNETSNVNLEVK-NVKVESRQGRRE 112

Query: 61  LVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           LVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTMPTARICR
Sbjct: 113 LVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICR 157

[Close]

BLAST of MS010188 vs. ExPASy TrEMBL
Match: A0A1S3BML8 (photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491503 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.0e-28
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MASTAIAASFLPFTA-KHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRRE 60
           MAS A+ ASFLP TA K PSA  RRALIVAKAS  +N+ S  NLE+K +V+VES QGRRE
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKAS-TSNETSNVNLEVK-NVKVESRQGRRE 112

Query: 61  LVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           LVA AVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTMPTARICR
Sbjct: 113 LVAAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICR 157

[Close]

BLAST of MS010188 vs. ExPASy TrEMBL
Match: A0A6J1J874 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484352 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQG 60
           MAS +I ASFLPFTA  PS AA RRAL V KA  SAAA D+ S  NLE+K +V+VES QG
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIK-NVKVESSQG 60

Query: 61  RRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           RRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP+CVTMPTARICR
Sbjct: 61  RRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICR 109

[Close]

BLAST of MS010188 vs. ExPASy TrEMBL
Match: A0A6J1FY72 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449001 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPS-AATRRALIVAKA--SAAANDA-SKPNLEMKRSVQVESWQG 60
           MAS +I ASFLPFTA  PS AA RRAL V KA  SAAA D+ S  NLE+K +V+VES QG
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIK-NVKVESSQG 60

Query: 61  RRELVAVAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR 107
           RRELVA AVTVAAAT AKAAMADEP RGSAEAKQKYAP+CVTMPTARICR
Sbjct: 61  RRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICR 109

[Close]

BLAST of MS010188 vs. TAIR 10
Match: AT1G51400.1 (Photosystem II 5 kD protein )

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-17
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHP---SAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGR 60
           MAS  + +SFLP  +  P   S+ +RR+L V KAS + N  S  N + ++S+++     R
Sbjct: 1   MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKASGSENTTSLENKKQEQSMKM-----R 60

Query: 61  RELVAVAVTVAAATLAKAAMA-DEPKRGSAEAKQKYAPVCVTMPTARICRN 108
           R+LV  A   A  +LAK AMA DEPKRG+  AK+KYAPVCVTMPTA+ICRN
Sbjct: 61  RDLVFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICRN 106

[Close]

BLAST of MS010188 vs. TAIR 10
Match: AT3G21055.1 (photosystem II subunit T )

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14
Identity = 54/108 (50.00%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MASTAIAASFLPFTAKHPSAATRRALIVAKASAAANDASKPNLEMKRSVQVESWQGRREL 60
           MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+K   +  S   RR+L
Sbjct: 1   MASMTMTATFFPAVAKVPSATGGRRLSVVRASTSDN---TPSLEVK---EQSSTTMRRDL 60

Query: 61  VAVAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVTMPTARICR 107
           +  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVTMPTA+ICR
Sbjct: 61  MFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

The following BLAST results are available for this feature:

BLAST of MS010188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148791.1	3.3e-44	97.20	photosystem II 5 kDa protein, chloroplastic [Momordica charantia]	[more]
XP_038901593.1	1.7e-27	76.64	photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_008449703.1	1.7e-27	77.57	PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA004142...	[more]
XP_022944588.1	3.7e-27	77.27	photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1...	[more]
KAG6570402.1	6.3e-27	75.89	Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]

BLAST of MS010188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39195	1.9e-13	50.00	Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P...	[more]
P31336	1.6e-12	48.62	Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSB...	[more]
B3EWI4	1.2e-09	45.54	Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1	[more]

BLAST of MS010188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6G0	1.6e-44	97.20	photosystem II 5 kDa protein, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5A7TID9	8.0e-28	77.57	Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BML8	8.0e-28	77.57	photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491...	[more]
A0A6J1J874	1.8e-27	77.27	photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FY72	1.8e-27	77.27	photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of MS010188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51400.1	4.8e-17	50.45	Photosystem II 5 kD protein	[more]
AT3G21055.1	1.3e-14	50.00	photosystem II subunit T	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040296	Photosystem II 5kDa protein, chloroplastic	PANTHER	PTHR34940	PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..107
None	No IPR available	PANTHER	PTHR34940:SF4	PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010188.1	MS010188.1	mRNA