MS010175 (gene) Bitter gourd (TR) v1

Overview


Name	MS010175
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Gibberellin-regulated family protein
Location	scaffold391: 477609 .. 477788 (-)
RNA-Seq Expression	MS010175
Synteny	MS010175

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGCGGAGGGCGGTGCACGGCGCGGTGCTCGGCGACGGCGTTCAAGAAGCCGTGTATGTTCTTCTGCAAAAAGTGCTGCGCGACGTGCTTGTGCGTGCCTCCGGGCACCTACGGGAACAAGCAGATGTGCCCTTGCTATAACAATTGGAAGACCAAGCGCGGCGGCCCAAAATGCCCT

mRNA sequence

GAATGCGGAGGGCGGTGCACGGCGCGGTGCTCGGCGACGGCGTTCAAGAAGCCGTGTATGTTCTTCTGCAAAAAGTGCTGCGCGACGTGCTTGTGCGTGCCTCCGGGCACCTACGGGAACAAGCAGATGTGCCCTTGCTATAACAATTGGAAGACCAAGCGCGGCGGCCCAAAATGCCCT

Coding sequence (CDS)

GAATGCGGAGGGCGGTGCACGGCGCGGTGCTCGGCGACGGCGTTCAAGAAGCCGTGTATGTTCTTCTGCAAAAAGTGCTGCGCGACGTGCTTGTGCGTGCCTCCGGGCACCTACGGGAACAAGCAGATGTGCCCTTGCTATAACAATTGGAAGACCAAGCGCGGCGGCCCAAAATGCCCT

Protein sequence

ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP

Homology

[Close]

BLAST of MS010175 vs. NCBI nr
Match: XP_022153040.1 (protein GAST1-like [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 5.3e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 49  ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of MS010175 vs. NCBI nr
Match: XP_022944307.1 (gibberellin-regulated protein 5-like [Cucurbita moschata] >KAG7010285.1 Protein GAST1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCT RCSAT+FKKPCM FC+KCCA CLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 49  ECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of MS010175 vs. NCBI nr
Match: XP_022985831.1 (protein GAST1-like [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCT RCSAT+FKKPCM FC+KCCA CLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 49  ECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of MS010175 vs. NCBI nr
Match: XP_023511912.1 (protein GAST1-like [Cucurbita pepo subsp. pepo] >XP_023511913.1 protein GAST1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCT RCSAT+FKKPCM FC+KCCA CLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 49  ECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of MS010175 vs. NCBI nr
Match: XP_010938633.1 (protein GAST1 [Elaeis guineensis])

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           EC GRCT+RCSATA+KKPCMFFC+KCCA CLCVPPGTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 48  ECPGRCTSRCSATAYKKPCMFFCQKCCAKCLCVPPGTYGNKQFCPCYNNWKTKRGGPKCP 107

[Close]

BLAST of MS010175 vs. ExPASy Swiss-Prot
Match: Q6NMQ7 (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-27
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           +CGG+CT RCS T + KPCMFFC+KCCA CLCVPPGTYGNKQ+CPCYNNWKT++GGPKCP
Sbjct: 42  QCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of MS010175 vs. ExPASy Swiss-Prot
Match: P27057 (Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-26
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           +C  +CT RCS T++KKPCMFFC+KCCA CLCVP GTYGNKQ CPCYNNWKTKRGGPKCP
Sbjct: 53  DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112

[Close]

BLAST of MS010175 vs. ExPASy Swiss-Prot
Match: A8MR46 (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.4e-26
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECG RC  RCS T +KKPC+FFC KCC  CLCVPPGTYGNKQ+CPCYNNWKTK GGPKCP
Sbjct: 44  ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of MS010175 vs. ExPASy Swiss-Prot
Match: P47926 (Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-25
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
          +C  RCT RCSAT+ KKPCMFFC+KCCATCLCVP G YGNKQ CPCYNNWKT+ G PKCP
Sbjct: 37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96

[Close]

BLAST of MS010175 vs. ExPASy Swiss-Prot
Match: Q84J95 (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-24
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
          +C  +C+ RCSAT+ KKPCMFFC KCC  CLCVPPGT+GNKQ CPCYNNWKTK G PKCP
Sbjct: 38 QCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97

[Close]

BLAST of MS010175 vs. ExPASy TrEMBL
Match: A0A6J1DFN7 (protein GAST1-like OS=Momordica charantia OX=3673 GN=LOC111020637 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 49  ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of MS010175 vs. ExPASy TrEMBL
Match: A0A7N0TAJ1 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           +CG RCT RCSATAFKKPC+FFC+KCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 51  DCGPRCTDRCSATAFKKPCLFFCRKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 110

[Close]

BLAST of MS010175 vs. ExPASy TrEMBL
Match: A0A6J1J9B2 (protein GAST1-like OS=Cucurbita maxima OX=3661 GN=LOC111483761 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCT RCSAT+FKKPCM FC+KCCA CLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 49  ECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of MS010175 vs. ExPASy TrEMBL
Match: A0A6J1FVD8 (gibberellin-regulated protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111448790 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCT RCSAT+FKKPCM FC+KCCA CLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP
Sbjct: 49  ECGGRCTVRCSATSFKKPCMVFCRKCCAKCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 108

[Close]

BLAST of MS010175 vs. ExPASy TrEMBL
Match: A0A7C9AK22 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-28
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECGGRCTARCSAT +KKPC+FFC KCCA CLCVPPGTYGNKQ+CPCYNNWKTKRGGPKCP
Sbjct: 52  ECGGRCTARCSATQYKKPCLFFCNKCCAKCLCVPPGTYGNKQLCPCYNNWKTKRGGPKCP 111

[Close]

BLAST of MS010175 vs. TAIR 10
Match: AT1G74670.1 (Gibberellin-regulated family protein )

HSP 1 Score: 122.9 bits (307), Expect = 9.0e-29
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           +CGG+CT RCS T + KPCMFFC+KCCA CLCVPPGTYGNKQ+CPCYNNWKT++GGPKCP
Sbjct: 42  QCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

[Close]

BLAST of MS010175 vs. TAIR 10
Match: AT3G10185.1 (Gibberellin-regulated family protein )

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-27
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           ECG RC  RCS T +KKPC+FFC KCC  CLCVPPGTYGNKQ+CPCYNNWKTK GGPKCP
Sbjct: 44  ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of MS010175 vs. TAIR 10
Match: AT3G02885.1 (GAST1 protein homolog 5 )

HSP 1 Score: 113.2 bits (282), Expect = 7.1e-26
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1  ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
          +C  +C+ RCSAT+ KKPCMFFC KCC  CLCVPPGT+GNKQ CPCYNNWKTK G PKCP
Sbjct: 38 QCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97

[Close]

BLAST of MS010175 vs. TAIR 10
Match: AT2G30810.1 (Gibberellin-regulated family protein )

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-23
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           EC   C  RCSAT+ +KPC+FFC KCC  CLCVP GTYG+K+ CPCYNNW TK GGPKCP
Sbjct: 47  ECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of MS010175 vs. TAIR 10
Match: AT5G15230.1 (GAST1 protein homolog 4 )

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-21
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1   ECGGRCTARCSATAFKKPCMFFCKKCCATCLCVPPGTYGNKQMCPCYNNWKTKRGGPKCP 60
           +C   C  RC  T + K C+ FC KCC  CLCVPPG YGNKQ+C CYNNWKT+ GGPKCP
Sbjct: 47  QCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106

The following BLAST results are available for this feature:

BLAST of MS010175 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153040.1	5.3e-31	100.00	protein GAST1-like [Momordica charantia]	[more]
XP_022944307.1	2.5e-28	91.67	gibberellin-regulated protein 5-like [Cucurbita moschata] >KAG7010285.1 Protein ...	[more]
XP_022985831.1	2.5e-28	91.67	protein GAST1-like [Cucurbita maxima]	[more]
XP_023511912.1	2.5e-28	91.67	protein GAST1-like [Cucurbita pepo subsp. pepo] >XP_023511913.1 protein GAST1-li...	[more]
XP_010938633.1	1.2e-27	90.00	protein GAST1 [Elaeis guineensis]	[more]

BLAST of MS010175 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NMQ7	1.3e-27	80.00	Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV...	[more]
P27057	1.4e-26	80.00	Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1	[more]
A8MR46	2.4e-26	80.00	Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 ...	[more]
P47926	3.4e-25	78.33	Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1	[more]
Q84J95	1.0e-24	75.00	Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV...	[more]

BLAST of MS010175 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFN7	2.6e-31	100.00	protein GAST1-like OS=Momordica charantia OX=3673 GN=LOC111020637 PE=3 SV=1	[more]
A0A7N0TAJ1	1.2e-28	91.67	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1	[more]
A0A6J1J9B2	1.2e-28	91.67	protein GAST1-like OS=Cucurbita maxima OX=3661 GN=LOC111483761 PE=3 SV=1	[more]
A0A6J1FVD8	1.2e-28	91.67	gibberellin-regulated protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A7C9AK22	2.0e-28	90.00	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1	[more]

BLAST of MS010175 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74670.1	9.0e-29	80.00	Gibberellin-regulated family protein	[more]
AT3G10185.1	1.7e-27	80.00	Gibberellin-regulated family protein	[more]
AT3G02885.1	7.1e-26	75.00	GAST1 protein homolog 5	[more]
AT2G30810.1	2.5e-23	70.00	Gibberellin-regulated family protein	[more]
AT5G15230.1	4.0e-21	63.33	GAST1 protein homolog 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 1..60 e-value: 1.4E-23 score: 82.8
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 1..60
None	No IPR available	PANTHER	PTHR23201:SF47	OS05G0376800 PROTEIN	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010175.1	MS010175.1	mRNA