MS010172 (gene) Bitter gourd (TR) v1

Overview


Name	MS010172
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reactive oxygen species modulator 1
Location	scaffold391: 444431 .. 444544 (+)
RNA-Seq Expression	MS010172
Synteny	MS010172

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTGCCAGGACTTCTGAAAATCAGGTATATTGGACAAACAACACTTGGAAGTGCCGCCATATTTGGTCTTTTCTTGGGTGCAGGGAGTTTGATACATTGTGGAAAGTCATAC

mRNA sequence

CAGGTGCCAGGACTTCTGAAAATCAGGTATATTGGACAAACAACACTTGGAAGTGCCGCCATATTTGGTCTTTTCTTGGGTGCAGGGAGTTTGATACATTGTGGAAAGTCATAC

Coding sequence (CDS)

CAGGTGCCAGGACTTCTGAAAATCAGGTATATTGGACAAACAACACTTGGAAGTGCCGCCATATTTGGTCTTTTCTTGGGTGCAGGGAGTTTGATACATTGTGGAAAGTCATAC

Protein sequence

QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY

Homology

[Close]

BLAST of MS010172 vs. NCBI nr
Match: KAB5520571.1 (hypothetical protein DKX38_024890 [Salix brachista])

HSP 1 Score: 79.3 bits (194), Expect = 7.7e-12
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 40 QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 77

[Close]

BLAST of MS010172 vs. NCBI nr
Match: KAG6789594.1 (hypothetical protein POTOM_005700 [Populus tomentosa])

HSP 1 Score: 79.3 bits (194), Expect = 7.7e-12
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 42 QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 79

[Close]

BLAST of MS010172 vs. NCBI nr
Match: RRT76631.1 (hypothetical protein B296_00011242 [Ensete ventricosum] >RWW05634.1 hypothetical protein GW17_00031083 [Ensete ventricosum] >RWW65427.1 hypothetical protein BHE74_00027270 [Ensete ventricosum] >RZS18947.1 hypothetical protein BHM03_00051268 [Ensete ventricosum])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          QVPGLLKIRYIGQTTLGSAA+FGLFLGAGSLIHCGKSY
Sbjct: 14 QVPGLLKIRYIGQTTLGSAAVFGLFLGAGSLIHCGKSY 51

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BLAST of MS010172 vs. NCBI nr
Match: KAG8471389.1 (hypothetical protein CXB51_036411 [Gossypium anomalum])

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          +VPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 37 KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

[Close]

BLAST of MS010172 vs. NCBI nr
Match: KAE9463273.1 (hypothetical protein C3L33_04813, partial [Rhododendron williamsianum])

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          +VPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 37 KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

[Close]

BLAST of MS010172 vs. ExPASy TrEMBL
Match: A0A5N5JMJ0 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024890 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-12
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 40 QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 77

[Close]

BLAST of MS010172 vs. ExPASy TrEMBL
Match: A0A444E5F3 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011242 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.9e-12
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          QVPGLLKIRYIGQTTLGSAA+FGLFLGAGSLIHCGKSY
Sbjct: 14 QVPGLLKIRYIGQTTLGSAAVFGLFLGAGSLIHCGKSY 51

[Close]

BLAST of MS010172 vs. ExPASy TrEMBL
Match: A0A1U8MN19 (reactive oxygen species modulator 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107939366 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          +VPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 37 KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

[Close]

BLAST of MS010172 vs. ExPASy TrEMBL
Match: A0A5D2B170 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G221700v1 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          +VPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 37 KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

[Close]

BLAST of MS010172 vs. ExPASy TrEMBL
Match: A0A0B0NRS1 (reactive oxygen species modulator 1-like OS=Gossypium arboreum OX=29729 GN=LOC108489266 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          +VPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY
Sbjct: 37 KVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 74

[Close]

BLAST of MS010172 vs. TAIR 10
Match: AT3G07910.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 7.5e-13
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  QVPGLLKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY 39
          +VPGL K+R+IGQTTL SAAIFGLFLGAGSLIHCGK Y
Sbjct: 37 KVPGLHKVRFIGQTTLSSAAIFGLFLGAGSLIHCGKGY 74

The following BLAST results are available for this feature:

BLAST of MS010172 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB5520571.1	7.7e-12	100.00	hypothetical protein DKX38_024890 [Salix brachista]	[more]
KAG6789594.1	7.7e-12	100.00	hypothetical protein POTOM_005700 [Populus tomentosa]	[more]
RRT76631.1	1.0e-11	97.37	hypothetical protein B296_00011242 [Ensete ventricosum] >RWW05634.1 hypothetical...	[more]
KAG8471389.1	2.3e-11	97.37	hypothetical protein CXB51_036411 [Gossypium anomalum]	[more]
KAE9463273.1	2.3e-11	97.37	hypothetical protein C3L33_04813, partial [Rhododendron williamsianum]	[more]

BLAST of MS010172 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010172 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5JMJ0	3.7e-12	100.00	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_024890 PE=3 SV=1	[more]
A0A444E5F3	4.9e-12	97.37	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00011242 PE=3 SV=1	[more]
A0A1U8MN19	1.1e-11	97.37	reactive oxygen species modulator 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107...	[more]
A0A5D2B170	1.1e-11	97.37	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G221700v1 PE=...	[more]
A0A0B0NRS1	1.1e-11	97.37	reactive oxygen species modulator 1-like OS=Gossypium arboreum OX=29729 GN=LOC10...	[more]

BLAST of MS010172 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07910.1	7.5e-13	84.21	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018450	Romo1/Mgr2	PFAM	PF10247	Romo1	coord: 2..34 e-value: 4.8E-9 score: 36.5
IPR018450	Romo1/Mgr2	PANTHER	PTHR28525	REACTIVE OXYGEN SPECIES MODULATOR 1	coord: 1..37
None	No IPR available	PANTHER	PTHR28525:SF6	BNAC03G35570D PROTEIN	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010172.1	MS010172.1	mRNA