MS010163 (gene) Bitter gourd (TR) v1

Overview
NameMS010163
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Locationscaffold391: 347252 .. 347371 (+)
RNA-Seq ExpressionMS010163
SyntenyMS010163
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTGCATCTTTCGATGGACCTCGTACACTCAGAAACCGACTTGTCTACAATGTAAGCATCCATTTGAGTTCATGATTCTACACCATTCTCTTGATGGAGATATGTGCACACATATTTTC

mRNA sequence

ACTTGCATCTTTCGATGGACCTCGTACACTCAGAAACCGACTTGTCTACAATGTAAGCATCCATTTGAGTTCATGATTCTACACCATTCTCTTGATGGAGATATGTGCACACATATTTTC

Coding sequence (CDS)

ACTTGCATCTTTCGATGGACCTCGTACACTCAGAAACCGACTTGTCTACAATGTAAGCATCCATTTGAGTTCATGATTCTACACCATTCTCTTGATGGAGATATGTGCACACATATTTTC

Protein sequence

TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF
Homology
[Close]
BLAST of MS010163 vs. NCBI nr
Match: XP_023511780.1 (uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 71  TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 110

[Close]
BLAST of MS010163 vs. NCBI nr
Match: KAA0061770.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 104 TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 143

[Close]
BLAST of MS010163 vs. NCBI nr
Match: XP_022987030.1 (uncharacterized protein LOC111484597 [Cucurbita maxima])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 70  TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 109

[Close]
BLAST of MS010163 vs. NCBI nr
Match: XP_022943783.1 (uncharacterized protein LOC111448431 [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 71  TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 110

[Close]
BLAST of MS010163 vs. NCBI nr
Match: KAG6570419.1 (hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 71  TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 110

[Close]
BLAST of MS010163 vs. ExPASy TrEMBL
Match: A0A6J1JFP2 (uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 70  TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 109

[Close]
BLAST of MS010163 vs. ExPASy TrEMBL
Match: A0A5D3B8D7 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00750 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 104 TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 143

[Close]
BLAST of MS010163 vs. ExPASy TrEMBL
Match: A0A5A7V3C1 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001490 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 104 TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 143

[Close]
BLAST of MS010163 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 71  TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 110

[Close]
BLAST of MS010163 vs. ExPASy TrEMBL
Match: A0A1S4DXR5 (uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SYTQKPTC QCKHPFEF+I+H SLDG +  ++F
Sbjct: 104 TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMF 143

[Close]
BLAST of MS010163 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 9.0e-09
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW SY +KPTC QCK PF+F+ +H +LDG +   +F
Sbjct: 68  TCILRWASYKEKPTCPQCKLPFDFLNVHRALDGSVEDFMF 107

[Close]
BLAST of MS010163 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-08
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 1   TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
           TCI RW S  + PTC QCKHPF+F+ +H +LDG +   +F
Sbjct: 71  TCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLF 110

[Close]
BLAST of MS010163 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-08
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 1  TCIFRWTSYTQKPTCLQCKHPFEFMILHHSLDGDMCTHIF 41
          TCI RW S  + PTC QCKHPF+F+ +H +LDG +   +F
Sbjct: 56 TCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLF 95

The following BLAST results are available for this feature:
BLAST of MS010163 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023511780.14.9e-0970.00uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo][more]
KAA0061770.14.9e-0970.00E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa][more]
XP_022987030.14.9e-0970.00uncharacterized protein LOC111484597 [Cucurbita maxima][more]
XP_022943783.14.9e-0970.00uncharacterized protein LOC111448431 [Cucurbita moschata][more]
KAG6570419.14.9e-0970.00hypothetical protein SDJN03_29334, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MS010163 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS010163 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JFP22.4e-0970.00uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597... [more]
A0A5D3B8D72.4e-0970.00E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5A7V3C12.4e-0970.00E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1FXD42.4e-0970.00uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC1114484... [more]
A0A1S4DXR52.4e-0970.00uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=... [more]
BLAST of MS010163 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G12310.19.0e-0955.00RING/U-box superfamily protein [more]
AT5G19430.11.2e-0852.50RING/U-box superfamily protein [more]
AT5G19430.21.2e-0852.50RING/U-box superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010163.1MS010163.1mRNA