MS010155 (gene) Bitter gourd (TR) v1

Overview


Name	MS010155
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	scaffold391: 288119 .. 288424 (-)
RNA-Seq Expression	MS010155
Synteny	MS010155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGCATATACAGAACGGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCCCCAGGAGCAAGCAATTATTCTGTGGTGTTTACTCAAGCTCGTGCCAACAGGAAACAGCAGAAGACTGACTTAACTGAGTTCAAAAGAAGCAGCCTAGGGAACGAAAGGGAGTTAATGGCGGCTGCAGGTCATCAACAAAAACATCGCCACCAACACCGCCACCGCCATGAACATCAAAACCAACACCGCCGCCATCACCACCACCAACATCATCATCAAGCAGCAGCAGATGACTCTATT

mRNA sequence

ATGTTGGTGCATATACAGAACGGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCCCCAGGAGCAAGCAATTATTCTGTGGTGTTTACTCAAGCTCGTGCCAACAGGAAACAGCAGAAGACTGACTTAACTGAGTTCAAAAGAAGCAGCCTAGGGAACGAAAGGGAGTTAATGGCGGCTGCAGGTCATCAACAAAAACATCGCCACCAACACCGCCACCGCCATGAACATCAAAACCAACACCGCCGCCATCACCACCACCAACATCATCATCAAGCAGCAGCAGATGACTCTATT

Coding sequence (CDS)

ATGTTGGTGCATATACAGAACGGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCCCCAGGAGCAAGCAATTATTCTGTGGTGTTTACTCAAGCTCGTGCCAACAGGAAACAGCAGAAGACTGACTTAACTGAGTTCAAAAGAAGCAGCCTAGGGAACGAAAGGGAGTTAATGGCGGCTGCAGGTCATCAACAAAAACATCGCCACCAACACCGCCACCGCCATGAACATCAAAACCAACACCGCCGCCATCACCACCACCAACATCATCATCAAGCAGCAGCAGATGACTCTATT

Protein sequence

MLVHIQNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAGHQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI

Homology

[Close]

BLAST of MS010155 vs. NCBI nr
Match: XP_022152996.1 (lateral signaling target protein 2 homolog [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 6   QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
           +NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG
Sbjct: 6   ENGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65

Query: 66  HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 103
           HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
Sbjct: 66  HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 102

[Close]

BLAST of MS010155 vs. NCBI nr
Match: XP_038901151.1 (lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 6   QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
           +N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQ+KTDLTEFKR+SLGNERELMAA G
Sbjct: 7   KNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERELMAATG 66

Query: 66  ----HQQKHRHQHRHRHE--HQNQHRRHHHHQHHHQAAADDSI 103
               HQ+ H H+H H HE  HQ+QH+  HHH H HQ  ADDS+
Sbjct: 67  KCHRHQKHHHHRHHHHHEQQHQHQHQHRHHHHHRHQPPADDSV 109

[Close]

BLAST of MS010155 vs. NCBI nr
Match: XP_038901152.1 (lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 76/103 (73.79%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 6   QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
           +N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQ+KTDLTEFKR+SLGNERELMAA G
Sbjct: 7   KNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERELMAATG 66

Query: 66  ----HQQKHRHQHRHRHE--HQNQHRRHHHHQHHHQAAADDSI 103
               HQ+ H H+H H HE  HQ+QH+  HHH H HQ  ADDS+
Sbjct: 67  KCHRHQKHHHHRHHHHHEQQHQHQHQHRHHHHHRHQPPADDSV 109

[Close]

BLAST of MS010155 vs. NCBI nr
Match: KAE8647369.1 (hypothetical protein Csa_004264 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 8.7e-26
Identity = 72/108 (66.67%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 7   NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG- 66
           N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQQKTDLTEFK++SLGNE+ELM A   
Sbjct: 8   NRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEAVDK 67

Query: 67  ---------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQA-AADDSI 103
                    H+ +HRH H H H+H + H  +HHHHQHHHQ+   DDS+
Sbjct: 68  HHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSV 115

[Close]

BLAST of MS010155 vs. NCBI nr
Match: XP_023512838.1 (dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 6   QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
           +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A 
Sbjct: 6   ENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIAD 65

Query: 66  HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 103
              +H HQHRHRHEH++QH    HH HH Q   D ++
Sbjct: 66  KHDRH-HQHRHRHEHRHQHHHQRHHPHHGQLPVDGAV 101

[Close]

BLAST of MS010155 vs. ExPASy TrEMBL
Match: A0A6J1DJD7 (lateral signaling target protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC111020600 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.6e-44
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 6   QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
           +NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG
Sbjct: 6   ENGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65

Query: 66  HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 103
           HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI
Sbjct: 66  HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 102

[Close]

BLAST of MS010155 vs. ExPASy TrEMBL
Match: A0A0A0KK09 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.2e-26
Identity = 72/108 (66.67%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 7   NGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG- 66
           N WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQQKTDLTEFK++SLGNE+ELM A   
Sbjct: 8   NRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEAVDK 67

Query: 67  ---------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQA-AADDSI 103
                    H+ +HRH H H H+H + H  +HHHHQHHHQ+   DDS+
Sbjct: 68  HHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSV 115

[Close]

BLAST of MS010155 vs. ExPASy TrEMBL
Match: A0A6J1JCC4 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.8e-24
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 6   QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
           +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A 
Sbjct: 6   ENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIAD 65

Query: 66  HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 103
              +H HQH HR EH++QH  H HH HH Q  AD ++
Sbjct: 66  KHDRH-HQHHHRREHRHQHHHHRHHPHHGQLPADGAV 101

[Close]

BLAST of MS010155 vs. ExPASy TrEMBL
Match: A0A6J1JEB9 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.8e-24
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 6   QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
           +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A 
Sbjct: 6   ENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIAD 65

Query: 66  HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQAAADDSI 103
              +H HQH HR EH++QH  H HH HH Q  AD ++
Sbjct: 66  KHDRH-HQHHHRREHRHQHHHHRHHPHHGQLPADGAV 101

[Close]

BLAST of MS010155 vs. ExPASy TrEMBL
Match: A0A6J1FX29 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.7e-23
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 6  QNGWRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAAG 65
          +N W+SVPEFGGWD+N P ASNYSVVF++ARAN+KQQKTDLTEFKR+SLGNE+ELMA A 
Sbjct: 6  ENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIAD 65

Query: 66 HQQKHRHQHRHRHEHQNQHRRHHHHQHHHQ 96
             +H HQHRHRHEH+ QH    HH HH Q
Sbjct: 66 KHDRH-HQHRHRHEHRQQHHHQRHHPHHGQ 94

[Close]

BLAST of MS010155 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.9e-11
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 9  WRSVPEFGGWDHNAPG-ASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERELMAAA--G 68
          W  VP+FGGWD   P  A+NYSVVF++ARANRKQ K  +   + SSLG+E+ELM +    
Sbjct: 10 WTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQELMVSVRRN 69

Query: 69 HQQKHRHQHRHRHEHQN 83
          HQQ H     HRHE Q+
Sbjct: 70 HQQLH-----HRHETQD 78

The following BLAST results are available for this feature:

BLAST of MS010155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152996.1	1.6e-43	98.97	lateral signaling target protein 2 homolog [Momordica charantia]	[more]
XP_038901151.1	1.1e-28	73.79	lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]	[more]
XP_038901152.1	1.1e-28	73.79	lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]	[more]
KAE8647369.1	8.7e-26	66.67	hypothetical protein Csa_004264 [Cucumis sativus]	[more]
XP_023512838.1	1.4e-23	67.01	dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS010155 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS010155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJD7	7.6e-44	98.97	lateral signaling target protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0KK09	4.2e-26	66.67	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G43...	[more]
A0A6J1JCC4	8.8e-24	67.01	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1JEB9	8.8e-24	67.01	dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FX29	9.7e-23	71.11	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of MS010155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19473.1	4.9e-11	53.25	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 10..40 e-value: 6.9E-8 score: 31.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..102
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 6..86
None	No IPR available	PANTHER	PTHR33882:SF11	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 6..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010155.1	MS010155.1	mRNA