MS010090 (gene) Bitter gourd (TR) v1

Overview


Name	MS010090
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U11/U12 small nuclear ribonucleoprotein 31 kDa protein
Location	scaffold779: 574261 .. 575022 (+)
RNA-Seq Expression	MS010090
Synteny	MS010090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCGAAAGGGAAAGAGAACAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCGCATCTTCTGCTCCGCCGCCGTCATCTTCACAGTCGTCTCAAGCACACTCACACTCTTCCATCAAGTCCGGCGGCGGCTCTGGAGGTTTGGTGCCTTCGAAATCGACTGTTTACGTTTCCAATGTTGACTATTCCCTCACCAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGCGTCACGGTGTTGAAAGACCGCCAGACCCGCAGATCTCGCGGCGTTGCTTTCATCCAGTTTATTTCGCAGGACGACGCGGTCAAGGCTTGTAAAGAGATGAACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACCGATAATGGCCGCGCCGCGGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGTGCGGTTGACGGGCATTTGTCTTATGAGTGCCCTAGAAACCAATTGGGGCCAAGGGAGCGACCAGAGCCGAAGCGGGGGAGGAGGGGTGGAGTCGGTGCAAGGCACGAGGAGGACTGGGGATCGGATGGTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTTGTGGATGGAGATGCGGACCAGAGACTGTTGACCGGCGGTGAGAACGTTGCAGAGAGGAAAAAAGGGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGATGAAGATGAG

mRNA sequence

ATGGCGCGAAAGGGAAAGAGAACAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCGCATCTTCTGCTCCGCCGCCGTCATCTTCACAGTCGTCTCAAGCACACTCACACTCTTCCATCAAGTCCGGCGGCGGCTCTGGAGGTTTGGTGCCTTCGAAATCGACTGTTTACGTTTCCAATGTTGACTATTCCCTCACCAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGCGTCACGGTGTTGAAAGACCGCCAGACCCGCAGATCTCGCGGCGTTGCTTTCATCCAGTTTATTTCGCAGGACGACGCGGTCAAGGCTTGTAAAGAGATGAACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACCGATAATGGCCGCGCCGCGGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGTGCGGTTGACGGGCATTTGTCTTATGAGTGCCCTAGAAACCAATTGGGGCCAAGGGAGCGACCAGAGCCGAAGCGGGGGAGGAGGGGTGGAGTCGGTGCAAGGCACGAGGAGGACTGGGGATCGGATGGTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTTGTGGATGGAGATGCGGACCAGAGACTGTTGACCGGCGGTGAGAACGTTGCAGAGAGGAAAAAAGGGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGATGAAGATGAG

Coding sequence (CDS)

ATGGCGCGAAAGGGAAAGAGAACAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCGCATCTTCTGCTCCGCCGCCGTCATCTTCACAGTCGTCTCAAGCACACTCACACTCTTCCATCAAGTCCGGCGGCGGCTCTGGAGGTTTGGTGCCTTCGAAATCGACTGTTTACGTTTCCAATGTTGACTATTCCCTCACCAATTCCGACCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGCGTCACGGTGTTGAAAGACCGCCAGACCCGCAGATCTCGCGGCGTTGCTTTCATCCAGTTTATTTCGCAGGACGACGCGGTCAAGGCTTGTAAAGAGATGAACGGGAAGATTTTGAATGGCCGTGTTCTGAAGGCTGCTATAGCGACCGATAATGGCCGCGCCGCGGAGTTTATAAGGAAGAGGGTTTATAAGGATAAGAGTAGGTGCTACGAGTGCGGTGCGGTTGACGGGCATTTGTCTTATGAGTGCCCTAGAAACCAATTGGGGCCAAGGGAGCGACCAGAGCCGAAGCGGGGGAGGAGGGGTGGAGTCGGTGCAAGGCACGAGGAGGACTGGGGATCGGATGGTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTTGTGGATGGAGATGCGGACCAGAGACTGTTGACCGGCGGTGAGAACGTTGCAGAGAGGAAAAAAGGGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGATGAAGATGAG

Protein sequence

MARKGKRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKKGKKASYFSDESDEDE

Homology

[Close]

BLAST of MS010090 vs. NCBI nr
Match: XP_022134360.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Momordica charantia])

HSP 1 Score: 496.9 bits (1278), Expect = 1.0e-136
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MARKGKRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPS 60
           MARKGKRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPS
Sbjct: 1   MARKGKRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPS 60

Query: 61  KSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKAC 120
           KSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKAC
Sbjct: 61  KSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKAC 120

Query: 121 KEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGP 180
           KEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGP
Sbjct: 121 KEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGP 180

Query: 181 RERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKKG 240
           RERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKKG
Sbjct: 181 RERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKKG 240

Query: 241 KKASYFSDESDEDE 255
           KKASYFSDESDEDE
Sbjct: 241 KKASYFSDESDEDE 254

[Close]

BLAST of MS010090 vs. NCBI nr
Match: XP_038883985.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 235/259 (90.73%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60
           MARKGKRT NPNSDS+DDETFYYRYPSAASSAPPP S+     SSQ+HSHSS K  GGSG
Sbjct: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 60

Query: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180
           AVKA K+MNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSD GEGFEDDNWASVVDGDADQRLLTGGENV 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240

Query: 241 ERKKGKKASYFSDESDEDE 255
           E+KK KKASYFSDESDED+
Sbjct: 241 EKKKAKKASYFSDESDEDD 259

[Close]

BLAST of MS010090 vs. NCBI nr
Match: XP_008456528.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo] >KAA0036504.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa] >TYJ99977.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.0 bits (1151), Expect = 5.5e-122
Identity = 234/259 (90.35%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPP-PSSSQ---SSQAHSHSSIKSGGGSG 60
           MARKGK+T NP SDSD+DETFYYRYPSAASSAPP PSSSQ   SSQ+HSHSS KSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180
           AVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSD GE FEDDNWASVVDGDADQRLLTGGEN+ 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 ERKKGKKASYFSDESDEDE 255
           E+KK KKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of MS010090 vs. NCBI nr
Match: XP_022993724.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_022993726.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima])

HSP 1 Score: 433.3 bits (1113), Expect = 1.4e-117
Identity = 225/259 (86.87%), Postives = 234/259 (90.35%), Query Frame = 0


Query: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60
           M+RKGKR  NPNSDSDDDETFYYRYPSA SSAPPP SS     SSQ+HSHSS KSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180
           AVK  K+M+GKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GEGFEDD WASVVDGDADQRLLT  ENV 
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 ERKKGKKASYFSDESDEDE 255
           E+KK KKASYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of MS010090 vs. NCBI nr
Match: XP_031739837.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745445.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745456.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745622.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >XP_031745721.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >KAE8637133.1 hypothetical protein CSA_021509 [Cucumis sativus] >KAE8637376.1 hypothetical protein CSA_004469 [Cucumis sativus] >KAE8637383.1 hypothetical protein CSA_004476 [Cucumis sativus] >KAE8637476.1 hypothetical protein CSA_018827 [Cucumis sativus] >KAE8637589.1 hypothetical protein CSA_021598 [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 2.4e-117
Identity = 227/261 (86.97%), Postives = 240/261 (91.95%), Query Frame = 0


Query: 1   MARKGKRTN-PNSDSDDDETFYYRYPSAASSAPP-PSSSQS-----SQAHSHSSIKSGGG 60
           MA KGK+TN P SDSD+DETFYYRYPSA SS P  PSSSQS     S +HSHSS KSGGG
Sbjct: 1   MAPKGKKTNSPTSDSDEDETFYYRYPSAPSSDPSLPSSSQSHFSSQSHSHSHSSTKSGGG 60

Query: 61  SGGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQ 120
           SGGLVPSKST+YVSN DYSLTNSDLHTLFS FGKIARVTVLKDRQTR+SRGVAF+QFISQ
Sbjct: 61  SGGLVPSKSTLYVSNFDYSLTNSDLHTLFSNFGKIARVTVLKDRQTRKSRGVAFVQFISQ 120

Query: 121 DDAVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 180
           DDAVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGA+DGHLSYEC
Sbjct: 121 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAIDGHLSYEC 180

Query: 181 PRNQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGEN 240
           P+NQLGPRERPEPKR RRGGVGARHEEDWGSD GEGFEDDNWASVVDGDADQRLLTGGEN
Sbjct: 181 PKNQLGPRERPEPKRVRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 240

Query: 241 VAERKKGKKASYFSDESDEDE 255
           + E+KK KKASYFSDESDED+
Sbjct: 241 IVEKKKEKKASYFSDESDEDD 261

[Close]

BLAST of MS010090 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.8e-73
Identity = 157/262 (59.92%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 6   KRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPSKSTVY 65
           KR   +SD ++D+TFYYRY S A  APPPS+ +   + S  S   GGGSGGL PSKST+Y
Sbjct: 3   KRKIHHSDDEEDDTFYYRYSSVA--APPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLY 62

Query: 66  VSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKACKEMNG 125
           VSN+D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ ++S++DA KA + M+ 
Sbjct: 63  VSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDA 122

Query: 126 KILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGPRERPE 185
           KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECP+NQLGPRERP 
Sbjct: 123 KILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGPRERPP 182

Query: 186 P--KRGRR-GGVGARHEEDWGSD------GGEGFEDDNWASVVDGDADQRLLTGGENVAE 245
           P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL        E
Sbjct: 183 PPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKREAEEEE 242

Query: 246 ----RKKGKKASYFSDESDEDE 255
               ++K KK SYFSDESD+++
Sbjct: 243 ERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of MS010090 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.9e-42
Identity = 101/214 (47.20%), Postives = 139/214 (64.95%), Query Frame = 0


Query: 54  SGGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQ 113
           SGGL PSKSTVYVSN+ +SLTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 114 DDAVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 173
           D A+   + +N K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 174 PRNQLGPRERPEPKRGRRGGVGARHEE-----DWGSDGGEGFEDDN--------WASVVD 233
           P+N LG RE P+ K  ++       EE     +   + GE    D+         A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 234 GDADQRLLTGGENVAE---RKKGKKASYFSDESD 252
                R  TGG + ++   R + KK++YFSDE +
Sbjct: 182 EQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDEEE 214

[Close]

BLAST of MS010090 vs. ExPASy Swiss-Prot
Match: Q56JZ7 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Bos taurus OX=9913 GN=ZCRB1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-41
Identity = 101/214 (47.20%), Postives = 138/214 (64.49%), Query Frame = 0


Query: 54  SGGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQ 113
           SGGL PSKSTVYVSN+ +SLTN+DL+ +FS +GK+ +VT++KD+ TRRS+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61

Query: 114 DDAVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 173
           D A    + +N K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 174 PRNQLGPRERPEPKRGRRGGVGARHEE-----DWGSDGGEGFEDDN--------WASVVD 233
           P+N LG RE P+ K  ++       EE     +   D GE    D+         A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKIPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 181

Query: 234 GDADQRLLTGGENVAE---RKKGKKASYFSDESD 252
                +  +GG + ++   R + KK++YFSDE +
Sbjct: 182 EQKKWKPSSGGPSTSDDSRRPRIKKSTYFSDEEE 214

[Close]

BLAST of MS010090 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.2e-41
Identity = 100/214 (46.73%), Postives = 139/214 (64.95%), Query Frame = 0


Query: 54  SGGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQ 113
           SGGL PSKSTVYVSN+ +SLTN+DL+ +FS +GK+ +VT++KD+ TR+S+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 114 DDAVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 173
           D A+   + +N K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 174 PRNQLGPRERPEPKRGRRGGVGARHEE-----DWGSDGGEGFEDDN--------WASVVD 233
           P+N LG RE P+ K  ++       EE     +   + GE    D+         A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 234 GDADQRLLTGGENVAE---RKKGKKASYFSDESD 252
             +  R   GG + ++   R + KK++YFSDE +
Sbjct: 182 EQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEE 214

[Close]

BLAST of MS010090 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.0e-41
Identity = 98/215 (45.58%), Postives = 135/215 (62.79%), Query Frame = 0


Query: 54  SGGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQ 113
           SGGL PSKSTVYVSN+ +SLTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 114 DDAVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 173
           + A    + +N K L GR++KA+IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 174 PRNQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDG---------DAD 233
           P+N LG RE P  K  ++     + EE    D  E  ED    S+            + +
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 234 QRLLTGGENVAE--------RKKGKKASYFSDESD 252
           +R     E+ ++        + + KK++YFSDE +
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDEEE 215

[Close]

BLAST of MS010090 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.0e-137
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MARKGKRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPS 60
           MARKGKRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPS
Sbjct: 1   MARKGKRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPS 60

Query: 61  KSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKAC 120
           KSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKAC
Sbjct: 61  KSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKAC 120

Query: 121 KEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGP 180
           KEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGP
Sbjct: 121 KEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGP 180

Query: 181 RERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKKG 240
           RERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKKG
Sbjct: 181 RERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVAERKKG 240

Query: 241 KKASYFSDESDEDE 255
           KKASYFSDESDEDE
Sbjct: 241 KKASYFSDESDEDE 254

[Close]

BLAST of MS010090 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.7e-122
Identity = 234/259 (90.35%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPP-PSSSQ---SSQAHSHSSIKSGGGSG 60
           MARKGK+T NP SDSD+DETFYYRYPSAASSAPP PSSSQ   SSQ+HSHSS KSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180
           AVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSD GE FEDDNWASVVDGDADQRLLTGGEN+ 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 ERKKGKKASYFSDESDEDE 255
           E+KK KKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of MS010090 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.7e-122
Identity = 234/259 (90.35%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPP-PSSSQ---SSQAHSHSSIKSGGGSG 60
           MARKGK+T NP SDSD+DETFYYRYPSAASSAPP PSSSQ   SSQ+HSHSS KSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180
           AVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240
           NQLGPRERPEPKRGRRGGVGARHEEDWGSD GE FEDDNWASVVDGDADQRLLTGGEN+ 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 ERKKGKKASYFSDESDEDE 255
           E+KK KKASYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]

BLAST of MS010090 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.8e-118
Identity = 225/259 (86.87%), Postives = 234/259 (90.35%), Query Frame = 0


Query: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60
           M+RKGKR  NPNSDSDDDETFYYRYPSA SSAPPP SS     SSQ+HSHSS KSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180
           AVK  K+M+GKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GEGFEDD WASVVDGDADQRLLT  ENV 
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 ERKKGKKASYFSDESDEDE 255
           E+KK KKASYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of MS010090 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.2e-117
Identity = 225/259 (86.87%), Postives = 234/259 (90.35%), Query Frame = 0


Query: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSSQ----SSQAHSHSSIKSGGGSG 60
           M+RK KR  NPNSDSDDDETFYYRYPSA SSAPPP SS     SSQ+HSHSS KSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120
           GLVPSKSTVYVSN DYSLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180
           AVK  K+M+GKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENV 
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 ERKKGKKASYFSDESDEDE 255
           E+KK KKASYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]

BLAST of MS010090 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.7e-74
Identity = 157/262 (59.92%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 6   KRTNPNSDSDDDETFYYRYPSAASSAPPPSSSQSSQAHSHSSIKSGGGSGGLVPSKSTVY 65
           KR   +SD ++D+TFYYRY S A  APPPS+ +   + S  S   GGGSGGL PSKST+Y
Sbjct: 3   KRKIHHSDDEEDDTFYYRYSSVA--APPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLY 62

Query: 66  VSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKACKEMNG 125
           VSN+D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ ++S++DA KA + M+ 
Sbjct: 63  VSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDA 122

Query: 126 KILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPRNQLGPRERPE 185
           KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECP+NQLGPRERP 
Sbjct: 123 KILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGPRERPP 182

Query: 186 P--KRGRR-GGVGARHEEDWGSD------GGEGFEDDNWASVVDGDADQRLLTGGENVAE 245
           P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL        E
Sbjct: 183 PPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKREAEEEE 242

Query: 246 ----RKKGKKASYFSDESDEDE 255
               ++K KK SYFSDESD+++
Sbjct: 243 ERRMKRKEKKVSYFSDESDDED 261

[Close]

BLAST of MS010090 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 55  GGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQD 114
           G L    S ++V  + +   +S L   F++FG++   TV+ DR+T RSRG  F+ F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 115 DAVKACKEMNGKILNGRVLKAAIATDNGRA 145
            A  A KEM+GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of MS010090 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-12
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 55  GGLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQD 114
           G L    S ++V  + +   +S L   F++FG++   TV+ DR+T RSRG  F+ F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 115 DAVKACKEMNGKILNGRVLKAAIATDNGRA 145
            A  A KEM+GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of MS010090 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 59  PSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVK 118
           P  S + V N+ +S +   L   FS FG+IA V ++KD   +RS+G AFIQF SQDDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 119 ACKEMNGKILNGRVLKAAIATDNGR 144
           A + M+ ++ NGR++   IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]

BLAST of MS010090 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-11
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 64  VYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDDAVKACKEM 123
           ++VS +    T+  L  LFS FG+I    +++D +T+R +G  FI F S+DDA KA K +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 124 NGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS 158
           +GKI++GR++   +A    + AE +R  +  +K+
Sbjct: 69  DGKIVDGRLIFVEVA----KNAEEVRAGINSNKA 98

The following BLAST results are available for this feature:

BLAST of MS010090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134360.1	1.0e-136	100.00	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Momordica charantia]	[more]
XP_038883985.1	1.3e-123	90.73	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida]	[more]
XP_008456528.1	5.5e-122	90.35	PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]...	[more]
XP_022993724.1	1.4e-117	86.87	U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_02...	[more]
XP_031739837.1	2.4e-117	86.97	U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Cucumis sativus] >X...	[more]

BLAST of MS010090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAE4	3.8e-73	59.92	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O...	[more]
Q499V6	5.9e-42	47.20	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve...	[more]
Q56JZ7	1.3e-41	47.20	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Bos taurus O...	[more]
Q9CZ96	2.2e-41	46.73	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus...	[more]
Q5SP50	5.0e-41	45.58	Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ...	[more]

BLAST of MS010090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BY38	5.0e-137	100.00	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX...	[more]
A0A5A7SYZ1	2.7e-122	90.35	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3C324	2.7e-122	90.35	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JX53	6.8e-118	86.87	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36...	[more]
A0A6J1FIA0	1.2e-117	86.87	U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=...	[more]

BLAST of MS010090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10400.1	2.7e-74	59.92	RNA recognition motif and CCHC-type zinc finger domains containing protein	[more]
AT3G23830.1	1.7e-12	38.89	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	1.7e-12	38.89	glycine-rich RNA-binding protein 4	[more]
AT4G20030.1	2.5e-11	42.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	7.2e-11	36.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 63..136 e-value: 1.1E-6 score: 38.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 63..136 e-value: 1.3E-25 score: 101.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 64..134 e-value: 1.2E-21 score: 76.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 62..140 score: 19.058443
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 34..213 e-value: 1.5E-28 score: 101.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR46259:SF1	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 11..253
IPR044598	Zinc finger CCHC-type and RNA-binding motif-containing protein 1	PANTHER	PTHR46259	ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1	coord: 11..253
IPR034219	ZCRB1, RNA recognition motif	CDD	cd12393	RRM_ZCRB1	coord: 61..138 e-value: 9.04322E-40 score: 130.513
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 58..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010090.1	MS010090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding