MS010041 (gene) Bitter gourd (TR) v1

Overview


Name	MS010041
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	regulator of nonsense transcripts UPF2
Location	scaffold779: 160971 .. 171199 (+)
RNA-Seq Expression	MS010041
Synteny	MS010041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCATCATGAAGATGATGGCCGCCCGGGGGGTGAAAGTCAACCCAAGAGAGATGATGAGGTGAGATCGATGTACAAGTACAACTGTTGTTATTTACTCCTATTAGCTTTTATTTCTTCCTTTCATTTACTATGGTTTTTTTCATAAATCATTGGATATGGTTATCTATGGTCTGAAAATTCATCCCACAACCTTGCTATCTTTACACCATGATTAAGTCTCTGGCCCATTCTTTCACATACATAATTGCTTACTCATCTAATTATGTTCTTTTATCATTTTCTCTTGGTTTCTCATACTGGATGTTTATAGTTCTCCAAGAATGTGTAGGTAACTGTGTGCTGCTGGTTGTTTTTCTCATATTGTAGGAAACTGTTGCTCGTCAGGAAGAAATTAAAAAATCCTTTGAGGCTAAAATAGCTCTTCGTCAAAGTAATTTGAATCCCGAGAGGCCTGGTTAGTGAATTATCTTCAGCATTTCAACGATCGTGCATTTATTTATTGAGTTAGATGGTAGTTCTAACTTTTTTCTGGCTAGTGAAATGTCCAATATAACCTATATGATGAAAAAACAACAAATATTCTCATGCCACTATGAGACTGGCCTTTGAACTTGAATCTTTATGTTCAATAAAAACTTATGTTTCAAAAATTTGTTTATTTATTTTTAAAGATTTTGAAATAGGTATTTGTGAACTCTTGGTTATGTTCTGTCGGGCAAAAAAATTATTGTTGTAGCCTACTCAAGGACATTGAAGAAGTCATTTTGAGTTGAGATTGGGTATAGTAGTTATGTTCACTTGATGGGAGGGGCCACAAAAATCTCATATAAAATGTTTCAAGGCTTTCAAGGTATTAGTGTAGTTTTAGTTTAATAAATAGCAGAGTCCCGTCCAAAATCTTGAAAGCTTTGAACTGATTCTCAGCCTTGATCACTTTGTCCTGTTTAGCTAGGAAAGTAGTTAAATGAAGGGAAAAAAATTATTTAATTGTTATGCTCTTATGAAAATTCAGATTTTTAAATCATTACTCCTTGTAAATGTTTCCTGACAATGTGTAATTTCCTTTTAGTTATTGTAGACTTTGAGGAAAGTGAAAAAACATATATATTTGATGTCGTGTATATATATGTATATTAATTTCACCAAAGTTCAGATGAATGTTAATCATTTGACACATATTTGAGACATATTTTAATGTTTGTTTTTGCCTGCAGACTCTGGATTCCTTAGAACTTTGGATTCTAGTATTAAACGCAACACAACAATTATTAAAAAATTAAAGCAGATAAATGAAGAACAACGAGAAGGGCTGATGGATGAGTTGCGAAATGTAAATATGAGCAAATTTGTTAGTGAGGCCGTTGCTGCTATTTGTGATGCTAAGCTTAGAGCTTCTGATATTCAAGCAGCTGTTCAGGTAACCTCCTTTCAGTTTTTTTTTTTTATCGTTTTGTGGTTCAATTTTGTTGTTGTTGGGTGCTGGGGATAGGGGTGGGGTTTAGAATCTTAGTCACTTCAAATGATTTGAACAAAAGTTTTCTATTAATTCCACTTATCTATCTTTTCCTATACCCCTTCCTTGGATTGGTAAATATATTTTCTTCATTGTACGTTGTTATTTTACCTTTTAGCTCTATAATTGACTTAAAATTAAATTTACTCGTTGTTTAATGAGGAATGAAAATGGTAGCCAGGTTTCTTATGTTTTCTGTGGAATATTTATTTGGAGAGGAACAAATGGGTGCTCCCTTAAAATTCAATGCTCCCACACATCCTTTCGAATTCATTTTGAACACCCCCCCTACTTATCTTTTCGGGTAGCCCTTTTTGGTTGGTTTAGCTCATCTTCCGTGTGCCCTCTCCTTGTTCTTTTATCCATCTTAGTGAAAGTGATTTTCTCATTTAAATTAATGATTCACAGGACCAAAGTAATCTGTTAAGAATGTAGATTTGTGAGATTATTGGCATAGTATGATTACCAAACTTTCACATGCTGTGCTGAACAACAAGAAAAATAGTAAAAGTTCAGTCACTTATCTATATCTGATGTGTCTCCTTTCCCCTCCCCATAAAAAAAAAGATCTGTTCTCTTCTTCACCAAAGGTACAAAGACTTCTCACCATGCTTGATTCAAGGACTCTTGAAAGTATTTTTTCCTGGAAAGTCTGGGGACGAGTTGGATGCTGATAGGAACTTGAAGGCCATGAAGAAGCGCAGCACTCTCAAACTTCTTTTGGAACTTTTTTTTGTTGGAGTTATAGAAGACTGTGCAATTTTCAATAATATTATTAAGGATCTTACGAGTATTGAACATTTGAGGGATCGTGATGCTACTCTAACAAATTTGACACTCCTTGCTAGCTTTGCTCGGCAAGGGAGAATCCTCTTGGGGCTACCGCCTACAGGACAAGATCATGAAGAGGTACATATCTTCCTACAGACAGATGGTACTGTTTACGTAACTTCTGTATTTGTTTGGTGTGGATTTTTTGGACTATTTCTTTATGATTCTAGTTAGTTTATGGTTCTCATGAATAATGGATTTCTATATTTGGCAGTTGCTAGTCACGAGTTTCAACTTTCCATGTGCTTGTAATGTTGACATTTTTCTTGCTCTCAATATGGAATTTATGAAATTTACTCGTTCCCAGTTTTGCTTTACTCTAAATTTATCAGGTAACATTCCATTTCAGTTTTTTAAGAGCCTCAATATTACTGCCGACCAAAAGAAATTCTTCAGAAAGGTGTTCCATACATATTATGATGCTGCGTCTGAATTGCTTCAGTCTGAACATACGGTAAGAGATTCACTATCTTCTCAGAAGCTACTTGTTTGATTTATCACTTGCGCTCCAATCCTCTCTTGTCTTGCCCTTCTGAGCTAAAATTTGATGTTATGATTCATTTTTTTGTTGTTTGTCATTAATTCATTTGGATGCGTTTATTTATTTGGTCATTATGTTAAAAAAACAATCATGACTTCTTTTCCATGAATATTTTATACTTGTGATATTTTTTATTGGTAATCAACTTTCATCATGATAAATGAAAGAATATATTTTACACTCAGAAATGTAATGATGGTTCACTTATCATACTCTTTTAAATGGCAGTCACTTCGCCAAATGGAGCATGAAAATGCGAAGATCTTGAATGCAAAAGGGGAACTCAATGATGAAAATGTCTCTTCATATGAAAAGTTGCGAAAATCTTATGACCATTTATATCGAAATGTCTCATCGTAAGTTACATTACGTCCCTCATATGGCATTCGATAATCTATTGATGGCTGGATGAATATATGGAATGCTTTTATTGTCCACGTCGAAATCTAATATTTACCACACAGTTTCCTAATTGATAAATGTTGATTCCTAATGACTTATTTCTTAACTCTGGTTTCGTTCCTATAATATATTTCTCAGTATCCTTGTAGTATTCTGCTGAAGTAGTTTCTCATTTAAAGAATATTGGAAGTATTTTTTACGTGAATGAGTGAAGTAATCCTTATAGATGAGTATCATGCACCATATTGAGATCAGAGGTAGTTGAGATGCATTAAAGAAAAGTAAGACGGGCAGTCAATTTCTTCATAGAAATAAAGTTATGTAGATGTTGCGATGAAAATGTTATTTTTTGTTTAACTCACCACAAAGTCAAATGAATTCCATGAACTATTTTTCCTTGGCGAATTTATGAAATTCTACGTTACACAGCTTAGCAGAAGCACTTGATATGCAACCCCCAGTGATGCCAGAGGATGGCCACACAACCAGGGTCTCTGCAGGAGAAGATGTTTCATCACCTGCTGCTGGAAAAGATTCTTCTGTGCTCGAAGCCATATGGGATGATGAAGACACTCGGGCCTTCTATGAATGCTTACCAGATCTCAGGTTTGGCTTGGTCAGATTATATAGTTTGATGAGAGCATCTAGGGTTCTTCTATTGATTACCTAGACTCAAAGATATTTCTGGCACATACATGTAAGAGTGTGTTATATGGATGAATATACTCGGTTTTTGAAAAAAGAAAAAAACCTTGTACAACATGCTCATGCATGTTGTAATTGCAAGTCTCATTAATGTTTTTTAATCGCTTAGTCCATTGTGTCCTTATAAGAGTTATATTTCTTAAAAACTGAAGTTCTTTGGTTCATTGAATCAACTTTTCAGAGCCTTTGTTCCAGCGGTACTGTTGGGAGAAGCGGAGCCTAAAGCAAATGATCAATCTACAAAGCCGGCAGAAAATATGGCTGTAATTTTCCAGGCTTGCAATTTTTTCTTTCAAACTTCTAGTTTTCCTCAACTGGTTTATATGAACCACTCTACTCTTTTACTTCTCTTACGTCTGGTCCTATTTAAAGATTAAGAAACAAAAAATCATCACATCTGTTTTCATTTTTGTTTTCAATTAATTAGATTGCTATAATATTAAAATATTGAACTGTTAATGTGAAGTTTAAAAGAGAGTTATATCTATTATTTATATTATAATTTTGCATACAATTTAAAACTAATAGGAAATAATGGTTTAAATTTAATTTCTATTGTATTTGAGTGGAATATTTTTTGAATTCAAATAAAAAATTATCATTATCGATAACATGTTATGGATATTAGATGTACTATGTTAATAATTAGACGAATTGGATATTTGTAATTTTTGATGGGGAAGTGAACAAAACGGCCCAAAAACAAATCCTCAAGTATTATCCCTTTTGAATATCATATTAAAGATAAAGATTTGATCCTTTGTGGTTCTTGTTAGCCTATTCTATGAAAATATATATTTTATGTAATGCTTGCTATTTGGTGAAGAATTTGTATGACTTCTATTTTAAAAGGAATCTGAAGCAGACCAAGGTCAGCAGACTTCCCTAGAGGCAGTTGAGATTTCTACCGACTGTTCGCTACAGGATGGCAAAATTAATGAAAAAGGGAAAGACAAGGAAGAAAAAGATAAAGAAAAGAGTAAGGATACAGACAAGGAGAAGGGGAAAGAAAAAGATGCAGATAGAAAGATGGAAAATGAAAAAGAGAAACTTAAAAATGTTGAAGGAACAAATTTGGATGCTTTGTTACAGAGACTCCCTGGTTGCGTCAGCCGTGACCTGATTGATCAGTTGACTGTAATCGCTTCTCTTTTTCTCAGTTTAATTGTGGACATCTTTTAGAGGGGATGGAAGGCTGAATATTCATTAAAAATATGATGTTAATATTCTTATATACTTGCAGGTAGAGTTCTGTTATTTGAATTCCAAGGCTAATCGAAAGAAGCTTGTAAGGGCTTTGTTTAACGTACCTAGGACATCTCTGGAGTTGCTGCCATACTACTCACGCATGGTTGCGACATTGTCAACTTGTATGAAGGATGTATCTGTCATTCTCCTCCAGATGTTAGAGGAGGAGTTCAATTTTTTATTGAACAAAAAGGTTTCATTTTAATTCATGTACATTTGCTAGGAATGGAGTTATCAGTTTTATCTTCTATCAATTTCATTTTTGTTTGTTTGTTTCCGTTTTTCATCAAACTATTTTATTCTGCAGGACCAAATGAACATTGAAACGAAGATTAGAAATATTAGGTTTATTGGAGAGCTCTGCAAGTTCAAAATTTCTTCAGCTGGCCTTGTTTTTAGCTGTTTGAAGGTATGAGTGGAGGCGACATTTGTTTTTCCTTTGTTTTTGAAGACTCTTTTATTTTTTCCTAGTCATAAAAGCCAAAAGAAAGCTCTAACTGGAAGTTGAACGAGAAGTTAGCCCATGCAAGTTTATGAACTAGACGCGATGTTTCTGTTGTGGTTGGAAATTGATGGTTAATTGATGAACATATTTTCTCTTTTTGGCAGTCGTGTTTAGATGATTTCACTCACCACAACATTGATGTCGCTTGTAATCTTCTTGAGACTTGTGGACGTTTTCTTTATCGATCTCCTGAAACTACAGTGCGGATGGCTAACATGTTGGAGATATTGATGCGTTTAAAAAATGTAAAAAATTTGGATCCCCGACATAGCACCCTGGTAGAAAATGCATACTATCTTTGCAAGCCACCAGAGAGATCCGCACGAGTGTCAAAAGTTCGTCCACCATTGCATCAGGTATAGGTTGCATCCTGTGTTCACAAAATTTTCTCTACGTATAGTTTTCTACTTTTCTTAAGTTTTTGTTACTCACTGTATCTTGCAGTATATTAGAAAGTTGCTCTTCTCAGATCTAGACAAGTCTGCCATTGAGAACGTGTTGAGGCAACTTCGGAAACTTCCATGGAGTGAATGTGAACAATACCTTTTAAAATGTTTTATGAAAGTTCACAAAGGGAAGTATGGCCAGATTCACTTGATTGCTTCTCTCACATCTGGTTTGAGTCGATATCATGATGAATTCTCGGTTGCTGTTGTTGACGAGGTATGTTCAGTTCTTAGAGAACTTTTCAAAATTTTTAGATCATCTGATAATCTCATTACCTATAGAGCGTGCTTTAGTGATGTTAATTTCATATGATTTTACATTTTTATGCAAATAAAGGGATGTTCAGTGGTACTTTTAACCATTTAAATATGCTTTTCCGTGATTTGAAAAGTATACAGATTATATGTTAGTAGTACTTGTATTTTCTACAAATGTATTTTGGACACTTCGAGTGGTTTTTAGAACAGAAATTAATGATTATTATTTTTTTATTAATTGGTTGTCTCATATGTTTGTCATTATTTTCTGTGTATAACTACAATTTCTACTTCTCACTAGCCTCTCTATATCTATTTTCTCTTACTGACTTCTTTAGGCGTTATTTCTTACAGTATCTCTTTCATCCACTCTATCTTGCTCCTTTGCACGTTAAGGGGTCTTTTTATATGCACATTCTTTTTCTTAACCTCCTCCGGTGCACTTTCTCTCATAAGTATCTCTAAATACATAAGTAGCTATTCTATTCTATATGTATATACTTTATCCTATTAACTTCCTTGAACATCCTTTCTCTCATTTGATTATTGAACCGGTTAGTCTGGAAACATTACAGTTTTTAACACGTTCCCTTCAATCTGTCAGTGAGAAAAATACATTTTGGTCATTCCTAAGTATTTCTAATTAGATAAAAAGATATTTTAATAATAGTAGATAAAAATAATGAATGATTGATTTTTCAGTACTTCTGATCGAAGTACAATTGCAAAGGTATTCTTAATAAGAAAAAAAGATTTATCTTGAAAACTTTCCCCAGCATGGGACACTTAATTCCTCTTAAAGTGGTATCCCGAACTTCTATTGAAACTATATAGCCTGAAACTGATGTATTCCATTAATGACTGCTTCGAGTAATTTGTTTTGCTAATGCTAATTAGGGAGACTCACTTTTGTTTGTGGATTTGACATAAAACTTCTCATAACTAATAATCGTTGTTATTGAGCTGCATTCTCCACAAAAGGAACAGGGTATTATGGATAACTTGAATAACCATTTTACTATATTCTTGTTTGAGTGATTAAAATTTGATAATCTTAATGGTTCCAGAGTAGGATAACAACACAGATTTGTTCGTAATTGTTTCTTAAAAACCATAGCAAGATTAAAATGTCGAGGAGTCTCTTGGATATTTCTTGGAAAGGGGACATGTTAGGAGACTAGGGAGGGTGATGAAAACACAACTTTTCCCCTACAAGTAGGGTGGATAGGCAAAAAAGACATTTGATTTTTGATGTTTTGCCTGTGGAGATCCAACACCACTTCTCTCTATGTACACATCTAATTATTCTTTCCCTCTGTTTATAACAAAATACCCAGCCAACGACATAATTCTCTGTCAAACTAACTAACAACTCACGAATATAGTCTACCTACCAGGTATCTAATAGACAAAAGAGAAGCTTGGGAATTGATGGTTGAACACTTGAACCATAGAACTCAAAAAATAGAATTCGATTAGTATTAAGTTCTTAGTTTATCTACTGCATATTTTCCCCATTTGAATATGCAATAATTCAGCATACTTTTTTAGATTTGTTTAGTCTGATTATTCGAAATTTATTGAGTGAAAGTTATGTTGTACTACATTATGAATGTAGCTTGACCACGTTCTCTTGTTTATTTATGATTTCTCTATTTTATTCGCTTTGATTGTTGTTATTGATCTCTATGATTACTAGGTCTTGGAAGAAATTAGGCTTGGACTTGAAGTAAATGATTATGGGATGCAACAAAAACGCATTGCGCATATGCGGTTTTTGGGGGAGTTGTACAACTATGAACTTGTAGAGTCATCTGTTGTTTTTGATACGCTCTATTTGATTCTTGTCTTTGGCCATGGCACATCAGAGGTATGAAATTGTTTTGTTTCTTTTTTCTTGTTTGGTTTATTTTTATGCTCGGTGGTTGAGTGAAAATCTGGGGGTGAAGCAATTAATAGTAAGGACTTGAGCCTTGGTATATGCGATTTGTTTGTGTCCGATGAATGGAGTAGACCATCACCTGACGTACGTTCAGTGTTGTGGAGGATAGAGTCCTGGTTCATGTAGTACATGTTTGTTTCGTTCTGCTTGGCCAAGTGGATGTTTTTGTTTCAAGGCTTATGTGATTGATCTTTGTTGCTTTTAGCAAGATGTACTGGATCCACCCGAGGACACTTTCCGCATACGGATGATTATCACTCTTCTTCAAACCTGTGGTCACTACTTTGATCGAGGATCTTCAAAGAGGAAACTTGATCGGTTTTTTATACACTTCCAGAAATATATTCTCAGCAAAGGCGCACTTCCATTGGATGTTGAGTTCGACTTACAGGTCAGTTTTTTATCTTGTTAGTTTACTGCTAAGTATCTTTCCCCCGTATATGTGAGCGTAGGATAAAAGTTGATGTCAAGTAGGATGGAAGCTGATGTCAAGTTAAGAAAACTCTGAATCATTGTAGTCTAGTTGTAATAGTAATTTGGCATTGGATACTCATGGTAAACCTGTTCTATAACATTTGCAAATTATACATTGGTGGCCACTTGTGTGATTGAAGTTTTTGTAATCTCTGTCAATTTGGCGAACCTTTGAAACGAGGTAGATGGTTCAAAAATTTTGCTGAATGCTTAATAGTGCGTGTTCACTTATTTTATCACCTTCCATTCCCACACGTCAAAGAAGCTGACAAAGTTGTTGCATTTGCAGGATTTATTTGCGGAATTGCAACCAAACATGACTAGATACTCATCCATTGAAGAAATAAATGCTGCTTTTGTAGAACTTGACGAGCATGAGCGTTCTGTCTCATCAAGTGATAAGCCCAATACCGAGAAACACCTTGATGCTGAAAAAACTCCCAGCAGAACTACTTCCAATACCACCTCAGCTAACGGAAGGGACACGGTCAATGGCTCTAGGGAAAATGGTGCAGCAGCTCATGAAGACGTTGCTGATAGTGACAGTGATACAGGAAGTGGCACTATTGAGGCAGAGGGACGTGATGATGAAGAGTCGGACTTGGAGAATCATGAAGATGGTGACAGTGAGGATGATGAAGACGACGAAGAAGGGGGTGGGCCTGCTTCGGATGAGGATGATGAGGTTCATGTTAGACAGAAAGTGGCTGAGGTAGACCCCCGAGAAGAAGCCAACTTCGAGCAGGAGCTGAGGGCTGTAATGCAGGCAAGAACTATTTTTGTGCTTTAAAATCCGAGGTTTTATTTTGACTTGATGAATGCATCAGTGCGTTTAAATTTTTTGGAATTCTACTGCAGGAGAGTATGGATCAGCGCAGGCAAGAGATACGTGGCCGACCGACATTGAATATGATGATACCGATGAATTTGTTTGAGGGAACAACGAGGGACCACCATGGAAGGGGGGTAGGGGGAGAGAGTGGGGATGAGGCATTGGACGAGGATGCTGGTGGAACCAAAGAGGTTCAGGTGAAAGTTCTCGTGAAGCGTGGGAACAAGCAGCAAACGAAGAAGATGTACATCCCTCGTGATTGCGCACTTTTACAGAGCACAAAACAGAAGGAAGCAGCAGAGCTAGAAGAGAAGCAAGATATTAAGAGGTTAATCTTAGAGTACAATGACCGGGAAGAGGAAGAGCTTAATGGCTTAGGCTCTCAAACAATGAATTGGATGCCGACAGGGGGTAATAGAGTCCCTACTCGGGGGAACAATTGGGAGGCGTCTGGTGGGAGGAGTGGTGGGCCACGTCATCCACATCATCGGTATATTGGCGGTGGCGTTCATTACAGTAGAAAAAAG

mRNA sequence

ATGGACCATCATGAAGATGATGGCCGCCCGGGGGGTGAAAGTCAACCCAAGAGAGATGATGAGGAAACTGTTGCTCGTCAGGAAGAAATTAAAAAATCCTTTGAGGCTAAAATAGCTCTTCGTCAAAGTAATTTGAATCCCGAGAGGCCTGACTCTGGATTCCTTAGAACTTTGGATTCTAGTATTAAACGCAACACAACAATTATTAAAAAATTAAAGCAGATAAATGAAGAACAACGAGAAGGGCTGATGGATGAGTTGCGAAATGTAAATATGAGCAAATTTGTTAGTGAGGCCGTTGCTGCTATTTGTGATGCTAAGCTTAGAGCTTCTGATATTCAAGCAGCTGTTCAGATCTGTTCTCTTCTTCACCAAAGGTACAAAGACTTCTCACCATGCTTGATTCAAGGACTCTTGAAAGTATTTTTTCCTGGAAAGTCTGGGGACGAGTTGGATGCTGATAGGAACTTGAAGGCCATGAAGAAGCGCAGCACTCTCAAACTTCTTTTGGAACTTTTTTTTGTTGGAGTTATAGAAGACTGTGCAATTTTCAATAATATTATTAAGGATCTTACGAGTATTGAACATTTGAGGGATCGTGATGCTACTCTAACAAATTTGACACTCCTTGCTAGCTTTGCTCGGCAAGGGAGAATCCTCTTGGGGCTACCGCCTACAGGACAAGATCATGAAGAGTTTTTTAAGAGCCTCAATATTACTGCCGACCAAAAGAAATTCTTCAGAAAGGTGTTCCATACATATTATGATGCTGCGTCTGAATTGCTTCAGTCTGAACATACGTCACTTCGCCAAATGGAGCATGAAAATGCGAAGATCTTGAATGCAAAAGGGGAACTCAATGATGAAAATGTCTCTTCATATGAAAAGTTGCGAAAATCTTATGACCATTTATATCGAAATGTCTCATCCTTAGCAGAAGCACTTGATATGCAACCCCCAGTGATGCCAGAGGATGGCCACACAACCAGGGTCTCTGCAGGAGAAGATGTTTCATCACCTGCTGCTGGAAAAGATTCTTCTGTGCTCGAAGCCATATGGGATGATGAAGACACTCGGGCCTTCTATGAATGCTTACCAGATCTCAGAGCCTTTGTTCCAGCGGTACTGTTGGGAGAAGCGGAGCCTAAAGCAAATGATCAATCTACAAAGCCGGCAGAAAATATGGCTGAATCTGAAGCAGACCAAGGTCAGCAGACTTCCCTAGAGGCAGTTGAGATTTCTACCGACTGTTCGCTACAGGATGGCAAAATTAATGAAAAAGGGAAAGACAAGGAAGAAAAAGATAAAGAAAAGAGTAAGGATACAGACAAGGAGAAGGGGAAAGAAAAAGATGCAGATAGAAAGATGGAAAATGAAAAAGAGAAACTTAAAAATGTTGAAGGAACAAATTTGGATGCTTTGTTACAGAGACTCCCTGGTTGCGTCAGCCGTGACCTGATTGATCAGTTGACTGTAGAGTTCTGTTATTTGAATTCCAAGGCTAATCGAAAGAAGCTTGTAAGGGCTTTGTTTAACGTACCTAGGACATCTCTGGAGTTGCTGCCATACTACTCACGCATGGTTGCGACATTGTCAACTTGTATGAAGGATGTATCTGTCATTCTCCTCCAGATGTTAGAGGAGGAGTTCAATTTTTTATTGAACAAAAAGGACCAAATGAACATTGAAACGAAGATTAGAAATATTAGGTTTATTGGAGAGCTCTGCAAGTTCAAAATTTCTTCAGCTGGCCTTGTTTTTAGCTGTTTGAAGTCGTGTTTAGATGATTTCACTCACCACAACATTGATGTCGCTTGTAATCTTCTTGAGACTTGTGGACGTTTTCTTTATCGATCTCCTGAAACTACAGTGCGGATGGCTAACATGTTGGAGATATTGATGCGTTTAAAAAATGTAAAAAATTTGGATCCCCGACATAGCACCCTGGTAGAAAATGCATACTATCTTTGCAAGCCACCAGAGAGATCCGCACGAGTGTCAAAAGTTCGTCCACCATTGCATCAGTATATTAGAAAGTTGCTCTTCTCAGATCTAGACAAGTCTGCCATTGAGAACGTGTTGAGGCAACTTCGGAAACTTCCATGGAGTGAATGTGAACAATACCTTTTAAAATGTTTTATGAAAGTTCACAAAGGGAAGTATGGCCAGATTCACTTGATTGCTTCTCTCACATCTGGTTTGAGTCGATATCATGATGAATTCTCGGTTGCTGTTGTTGACGAGGTCTTGGAAGAAATTAGGCTTGGACTTGAAGTAAATGATTATGGGATGCAACAAAAACGCATTGCGCATATGCGGTTTTTGGGGGAGTTGTACAACTATGAACTTGTAGAGTCATCTGTTGTTTTTGATACGCTCTATTTGATTCTTGTCTTTGGCCATGGCACATCAGAGCAAGATGTACTGGATCCACCCGAGGACACTTTCCGCATACGGATGATTATCACTCTTCTTCAAACCTGTGGTCACTACTTTGATCGAGGATCTTCAAAGAGGAAACTTGATCGGTTTTTTATACACTTCCAGAAATATATTCTCAGCAAAGGCGCACTTCCATTGGATGTTGAGTTCGACTTACAGGATTTATTTGCGGAATTGCAACCAAACATGACTAGATACTCATCCATTGAAGAAATAAATGCTGCTTTTGTAGAACTTGACGAGCATGAGCGTTCTGTCTCATCAAGTGATAAGCCCAATACCGAGAAACACCTTGATGCTGAAAAAACTCCCAGCAGAACTACTTCCAATACCACCTCAGCTAACGGAAGGGACACGGTCAATGGCTCTAGGGAAAATGGTGCAGCAGCTCATGAAGACGTTGCTGATAGTGACAGTGATACAGGAAGTGGCACTATTGAGGCAGAGGGACGTGATGATGAAGAGTCGGACTTGGAGAATCATGAAGATGGTGACAGTGAGGATGATGAAGACGACGAAGAAGGGGGTGGGCCTGCTTCGGATGAGGATGATGAGGTTCATGTTAGACAGAAAGTGGCTGAGGTAGACCCCCGAGAAGAAGCCAACTTCGAGCAGGAGCTGAGGGCTGTAATGCAGGCAAGAACTATTTTTGAGAGTATGGATCAGCGCAGGCAAGAGATACGTGGCCGACCGACATTGAATATGATGATACCGATGAATTTGTTTGAGGGAACAACGAGGGACCACCATGGAAGGGGGGTAGGGGGAGAGAGTGGGGATGAGGCATTGGACGAGGATGCTGGTGGAACCAAAGAGGTTCAGGTGAAAGTTCTCGTGAAGCGTGGGAACAAGCAGCAAACGAAGAAGATGTACATCCCTCGTGATTGCGCACTTTTACAGAGCACAAAACAGAAGGAAGCAGCAGAGCTAGAAGAGAAGCAAGATATTAAGAGGTTAATCTTAGAGTACAATGACCGGGAAGAGGAAGAGCTTAATGGCTTAGGCTCTCAAACAATGAATTGGATGCCGACAGGGGGTAATAGAGTCCCTACTCGGGGGAACAATTGGGAGGCGTCTGGTGGGAGGAGTGGTGGGCCACGTCATCCACATCATCGGTATATTGGCGGTGGCGTTCATTACAGTAGAAAAAAG

Coding sequence (CDS)

ATGGACCATCATGAAGATGATGGCCGCCCGGGGGGTGAAAGTCAACCCAAGAGAGATGATGAGGAAACTGTTGCTCGTCAGGAAGAAATTAAAAAATCCTTTGAGGCTAAAATAGCTCTTCGTCAAAGTAATTTGAATCCCGAGAGGCCTGACTCTGGATTCCTTAGAACTTTGGATTCTAGTATTAAACGCAACACAACAATTATTAAAAAATTAAAGCAGATAAATGAAGAACAACGAGAAGGGCTGATGGATGAGTTGCGAAATGTAAATATGAGCAAATTTGTTAGTGAGGCCGTTGCTGCTATTTGTGATGCTAAGCTTAGAGCTTCTGATATTCAAGCAGCTGTTCAGATCTGTTCTCTTCTTCACCAAAGGTACAAAGACTTCTCACCATGCTTGATTCAAGGACTCTTGAAAGTATTTTTTCCTGGAAAGTCTGGGGACGAGTTGGATGCTGATAGGAACTTGAAGGCCATGAAGAAGCGCAGCACTCTCAAACTTCTTTTGGAACTTTTTTTTGTTGGAGTTATAGAAGACTGTGCAATTTTCAATAATATTATTAAGGATCTTACGAGTATTGAACATTTGAGGGATCGTGATGCTACTCTAACAAATTTGACACTCCTTGCTAGCTTTGCTCGGCAAGGGAGAATCCTCTTGGGGCTACCGCCTACAGGACAAGATCATGAAGAGTTTTTTAAGAGCCTCAATATTACTGCCGACCAAAAGAAATTCTTCAGAAAGGTGTTCCATACATATTATGATGCTGCGTCTGAATTGCTTCAGTCTGAACATACGTCACTTCGCCAAATGGAGCATGAAAATGCGAAGATCTTGAATGCAAAAGGGGAACTCAATGATGAAAATGTCTCTTCATATGAAAAGTTGCGAAAATCTTATGACCATTTATATCGAAATGTCTCATCCTTAGCAGAAGCACTTGATATGCAACCCCCAGTGATGCCAGAGGATGGCCACACAACCAGGGTCTCTGCAGGAGAAGATGTTTCATCACCTGCTGCTGGAAAAGATTCTTCTGTGCTCGAAGCCATATGGGATGATGAAGACACTCGGGCCTTCTATGAATGCTTACCAGATCTCAGAGCCTTTGTTCCAGCGGTACTGTTGGGAGAAGCGGAGCCTAAAGCAAATGATCAATCTACAAAGCCGGCAGAAAATATGGCTGAATCTGAAGCAGACCAAGGTCAGCAGACTTCCCTAGAGGCAGTTGAGATTTCTACCGACTGTTCGCTACAGGATGGCAAAATTAATGAAAAAGGGAAAGACAAGGAAGAAAAAGATAAAGAAAAGAGTAAGGATACAGACAAGGAGAAGGGGAAAGAAAAAGATGCAGATAGAAAGATGGAAAATGAAAAAGAGAAACTTAAAAATGTTGAAGGAACAAATTTGGATGCTTTGTTACAGAGACTCCCTGGTTGCGTCAGCCGTGACCTGATTGATCAGTTGACTGTAGAGTTCTGTTATTTGAATTCCAAGGCTAATCGAAAGAAGCTTGTAAGGGCTTTGTTTAACGTACCTAGGACATCTCTGGAGTTGCTGCCATACTACTCACGCATGGTTGCGACATTGTCAACTTGTATGAAGGATGTATCTGTCATTCTCCTCCAGATGTTAGAGGAGGAGTTCAATTTTTTATTGAACAAAAAGGACCAAATGAACATTGAAACGAAGATTAGAAATATTAGGTTTATTGGAGAGCTCTGCAAGTTCAAAATTTCTTCAGCTGGCCTTGTTTTTAGCTGTTTGAAGTCGTGTTTAGATGATTTCACTCACCACAACATTGATGTCGCTTGTAATCTTCTTGAGACTTGTGGACGTTTTCTTTATCGATCTCCTGAAACTACAGTGCGGATGGCTAACATGTTGGAGATATTGATGCGTTTAAAAAATGTAAAAAATTTGGATCCCCGACATAGCACCCTGGTAGAAAATGCATACTATCTTTGCAAGCCACCAGAGAGATCCGCACGAGTGTCAAAAGTTCGTCCACCATTGCATCAGTATATTAGAAAGTTGCTCTTCTCAGATCTAGACAAGTCTGCCATTGAGAACGTGTTGAGGCAACTTCGGAAACTTCCATGGAGTGAATGTGAACAATACCTTTTAAAATGTTTTATGAAAGTTCACAAAGGGAAGTATGGCCAGATTCACTTGATTGCTTCTCTCACATCTGGTTTGAGTCGATATCATGATGAATTCTCGGTTGCTGTTGTTGACGAGGTCTTGGAAGAAATTAGGCTTGGACTTGAAGTAAATGATTATGGGATGCAACAAAAACGCATTGCGCATATGCGGTTTTTGGGGGAGTTGTACAACTATGAACTTGTAGAGTCATCTGTTGTTTTTGATACGCTCTATTTGATTCTTGTCTTTGGCCATGGCACATCAGAGCAAGATGTACTGGATCCACCCGAGGACACTTTCCGCATACGGATGATTATCACTCTTCTTCAAACCTGTGGTCACTACTTTGATCGAGGATCTTCAAAGAGGAAACTTGATCGGTTTTTTATACACTTCCAGAAATATATTCTCAGCAAAGGCGCACTTCCATTGGATGTTGAGTTCGACTTACAGGATTTATTTGCGGAATTGCAACCAAACATGACTAGATACTCATCCATTGAAGAAATAAATGCTGCTTTTGTAGAACTTGACGAGCATGAGCGTTCTGTCTCATCAAGTGATAAGCCCAATACCGAGAAACACCTTGATGCTGAAAAAACTCCCAGCAGAACTACTTCCAATACCACCTCAGCTAACGGAAGGGACACGGTCAATGGCTCTAGGGAAAATGGTGCAGCAGCTCATGAAGACGTTGCTGATAGTGACAGTGATACAGGAAGTGGCACTATTGAGGCAGAGGGACGTGATGATGAAGAGTCGGACTTGGAGAATCATGAAGATGGTGACAGTGAGGATGATGAAGACGACGAAGAAGGGGGTGGGCCTGCTTCGGATGAGGATGATGAGGTTCATGTTAGACAGAAAGTGGCTGAGGTAGACCCCCGAGAAGAAGCCAACTTCGAGCAGGAGCTGAGGGCTGTAATGCAGGCAAGAACTATTTTTGAGAGTATGGATCAGCGCAGGCAAGAGATACGTGGCCGACCGACATTGAATATGATGATACCGATGAATTTGTTTGAGGGAACAACGAGGGACCACCATGGAAGGGGGGTAGGGGGAGAGAGTGGGGATGAGGCATTGGACGAGGATGCTGGTGGAACCAAAGAGGTTCAGGTGAAAGTTCTCGTGAAGCGTGGGAACAAGCAGCAAACGAAGAAGATGTACATCCCTCGTGATTGCGCACTTTTACAGAGCACAAAACAGAAGGAAGCAGCAGAGCTAGAAGAGAAGCAAGATATTAAGAGGTTAATCTTAGAGTACAATGACCGGGAAGAGGAAGAGCTTAATGGCTTAGGCTCTCAAACAATGAATTGGATGCCGACAGGGGGTAATAGAGTCCCTACTCGGGGGAACAATTGGGAGGCGTCTGGTGGGAGGAGTGGTGGGCCACGTCATCCACATCATCGGTATATTGGCGGTGGCGTTCATTACAGTAGAAAAAAG

Protein sequence

MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDSSIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQICSLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIEDCAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNITADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQDGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYNYELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRKLDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSVSSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTIEAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSRKK

Homology

[Close]

BLAST of MS010041 vs. NCBI nr
Match: XP_022133716.1 (regulator of nonsense transcripts UPF2 [Momordica charantia])

HSP 1 Score: 2265.3 bits (5869), Expect = 0.0e+00
Identity = 1188/1198 (99.17%), Postives = 1189/1198 (99.25%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGR GGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRLGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC
Sbjct: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
            CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
Sbjct: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420

Query: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480
            DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG
Sbjct: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480

Query: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540
            CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV
Sbjct: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540

Query: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600
            ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH
Sbjct: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600

Query: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660
            NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
Sbjct: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660

Query: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720
            ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
Sbjct: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720

Query: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780
            YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
Sbjct: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780

Query: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840
            YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
Sbjct: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840

Query: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900
            LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
Sbjct: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900

Query: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960
            SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI
Sbjct: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960

Query: 961  EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE 1020
            EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE
Sbjct: 961  EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE 1020

Query: 1021 LRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDED 1080
            LRAVMQ     ESMDQRRQEIRGRPTLNMMIPMNLFEG TRDHHGRGVGGESGDEALDED
Sbjct: 1021 LRAVMQ-----ESMDQRRQEIRGRPTLNMMIPMNLFEG-TRDHHGRGVGGESGDEALDED 1080

Query: 1081 AGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDR 1140
            AGGTKEVQVKVLVKRGNKQQTKKM+IPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDR
Sbjct: 1081 AGGTKEVQVKVLVKRGNKQQTKKMFIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDR 1140

Query: 1141 EEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSRKK 1199
            EEEELNGLGSQTMNWM TGGNRVPTRGNNWE SGGRSGGPRHPHHRYIGGGVHYSRKK
Sbjct: 1141 EEEELNGLGSQTMNWMQTGGNRVPTRGNNWEGSGGRSGGPRHPHHRYIGGGVHYSRKK 1192

[Close]

BLAST of MS010041 vs. NCBI nr
Match: KAG6578740.1 (Regulator of nonsense transcripts UPF2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 2166.7 bits (5613), Expect = 0.0e+00
Identity = 1138/1199 (94.91%), Postives = 1164/1199 (97.08%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGRP  ESQPKRDDEET ARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 65   MDHHEDDGRPVSESQPKRDDEETAARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 124

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTTIIKKLKQIN+EQREGLMDELRNVNMSKFVSEAV+AICDAKLRASDIQAAVQIC
Sbjct: 125  SIKRNTTIIKKLKQINDEQREGLMDELRNVNMSKFVSEAVSAICDAKLRASDIQAAVQIC 184

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGV+ED
Sbjct: 185  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVVED 244

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
Sbjct: 245  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 304

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQME ENAK+LNAKGELNDENVSSYEKLRKS
Sbjct: 305  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKLLNAKGELNDENVSSYEKLRKS 364

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSSLAEA+DMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
Sbjct: 365  YDHLYRNVSSLAEAVDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 424

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KPAEN+AESEADQGQQTSLEAVEISTD  LQ
Sbjct: 425  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGQQTSLEAVEISTDSLLQ 484

Query: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480
            DGKINEKGKDKEEKDKEK+KDTDKEKGKEKDADRKMENEKEKLKN+EGTNLDALLQRLPG
Sbjct: 485  DGKINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKMENEKEKLKNIEGTNLDALLQRLPG 544

Query: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540
            CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSR+VATLSTCMKDVSV
Sbjct: 545  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRLVATLSTCMKDVSV 604

Query: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600
            ILLQMLEEEFNFLLNKKDQMNIETKI+NIRFIGELCKFKI+SAGLVFSCLK+CLDDFTHH
Sbjct: 605  ILLQMLEEEFNFLLNKKDQMNIETKIKNIRFIGELCKFKIASAGLVFSCLKACLDDFTHH 664

Query: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660
            NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
Sbjct: 665  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 724

Query: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720
            ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
Sbjct: 725  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 784

Query: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780
            YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
Sbjct: 785  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 844

Query: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840
            YELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
Sbjct: 845  YELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 904

Query: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900
            LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
Sbjct: 905  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 964

Query: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960
            S+  KPNTEKHLDA+K PSR TSNTTSANGRDTVNGS+ENG AAHED  DSDSDTGSGTI
Sbjct: 965  SNV-KPNTEKHLDAKK-PSRATSNTTSANGRDTVNGSKENG-AAHEDGVDSDSDTGSGTI 1024

Query: 961  EAEGRDDEESDLENHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQ 1020
            EAEG DDEESDLENHEDG D+EDDEDDEE GGPASDEDDEVHVR KVAEVDPREEANFEQ
Sbjct: 1025 EAEGHDDEESDLENHEDGCDTEDDEDDEEAGGPASDEDDEVHVRPKVAEVDPREEANFEQ 1084

Query: 1021 ELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDE 1080
            ELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDEAL+E
Sbjct: 1085 ELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEALEE 1144

Query: 1081 DAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYND 1140
            DAGG+KEVQVKVLVKRGNKQQTKKMYIPRD ALLQSTKQKEA ELEEKQDIKRLILEYND
Sbjct: 1145 DAGGSKEVQVKVLVKRGNKQQTKKMYIPRDSALLQSTKQKEAEELEEKQDIKRLILEYND 1204

Query: 1141 REEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSRKK 1199
            REEEELNGLGSQTMNWM TG NR PTRGNNW+ASGGRSGG  HPHHRY GGG+HYSRKK
Sbjct: 1205 REEEELNGLGSQTMNWMQTGNNRAPTRGNNWDASGGRSGGSHHPHHRYPGGGMHYSRKK 1255

[Close]

BLAST of MS010041 vs. NCBI nr
Match: XP_008463566.1 (PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Cucumis melo])

HSP 1 Score: 2165.6 bits (5610), Expect = 0.0e+00
Identity = 1134/1202 (94.34%), Postives = 1163/1202 (96.76%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTT+IKKLKQINEEQREGLMDELRNVNMSKFVSEAV+AICDAKLR SDIQAAVQIC
Sbjct: 61   SIKRNTTVIKKLKQINEEQREGLMDELRNVNMSKFVSEAVSAICDAKLRTSDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLL+ELFFVGV+ED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLMELFFVGVVED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPT QDHEEFFKSLNIT
Sbjct: 181  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTAQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQ+E ENAKILNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQLEQENAKILNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSS AEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSV+EAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSFAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVIEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KP EN+AESEA+QGQQTSLEA+E+STDC LQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPTENLAESEAEQGQQTSLEAIEVSTDCPLQ 420

Query: 421  DGKIN---EKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQR 480
            DGKIN   EKGKD+EEKDKEK+ DTDKEKGKEKD DRKMENEK KLKN+EGTNLDALLQR
Sbjct: 421  DGKINEKGEKGKDREEKDKEKNNDTDKEKGKEKDGDRKMENEKXKLKNIEGTNLDALLQR 480

Query: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540
            LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
Sbjct: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540

Query: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDF 600
            VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKI+SAGLVFSCLK+CLDDF
Sbjct: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDF 600

Query: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660
            THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
Sbjct: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660

Query: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720
            KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH
Sbjct: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720

Query: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780
            KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE
Sbjct: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780

Query: 781  LYNYELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840
            LYNYELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS
Sbjct: 781  LYNYELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840

Query: 841  KRKLDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHE 900
            KRKLDRFFIHFQKYILSKGALPLD+EFDLQDLFAELQPNMTRYSSIEEINAAFVEL+EHE
Sbjct: 841  KRKLDRFFIHFQKYILSKGALPLDIEFDLQDLFAELQPNMTRYSSIEEINAAFVELEEHE 900

Query: 901  RSVSSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGS 960
            RSV S+DKPNTEKHLDAEK PSR TS TTSANGRD VNGS+EN + AHED ADSDSDTGS
Sbjct: 901  RSV-SNDKPNTEKHLDAEK-PSRATSTTTSANGRDRVNGSKEN-SGAHEDGADSDSDTGS 960

Query: 961  GTIEAEGRDDEESDLENHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEAN 1020
            GTIEAEGRDDEESDLENHEDG D+EDDEDDEE GGPASDEDDEVHVRQKV EVDPREEAN
Sbjct: 961  GTIEAEGRDDEESDLENHEDGCDTEDDEDDEEPGGPASDEDDEVHVRQKVPEVDPREEAN 1020

Query: 1021 FEQELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEA 1080
            FEQELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDE 
Sbjct: 1021 FEQELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEG 1080

Query: 1081 LDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILE 1140
            LDEDAGG+KEVQVKVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILE
Sbjct: 1081 LDEDAGGSKEVQVKVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILE 1140

Query: 1141 YNDREEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSR 1199
            YNDREEEELNGLGSQTMNWM TGGNRVPTRGNNWEASGGRSGG RHPHHRY G G+HYSR
Sbjct: 1141 YNDREEEELNGLGSQTMNWMQTGGNRVPTRGNNWEASGGRSGGSRHPHHRYPGSGMHYSR 1194

[Close]

BLAST of MS010041 vs. NCBI nr
Match: XP_023550316.1 (regulator of nonsense transcripts UPF2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 2164.8 bits (5608), Expect = 0.0e+00
Identity = 1137/1199 (94.83%), Postives = 1163/1199 (97.00%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGRP  ESQPKRDDEET ARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRPVSESQPKRDDEETAARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTTIIKKLKQIN+EQREGLMDELRNVNMSKFVSEAV+AICDAKLRASDIQAAVQIC
Sbjct: 61   SIKRNTTIIKKLKQINDEQREGLMDELRNVNMSKFVSEAVSAICDAKLRASDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGD+LDADRNLKAMKKRSTLKLLLELFFVGV+ED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLKLLLELFFVGVVED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
Sbjct: 181  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQME ENAK+LNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKLLNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSSLAEA+DMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSLAEAVDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KPAEN+AESEADQGQQTSLE VEISTD  LQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGQQTSLEPVEISTDSLLQ 420

Query: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480
            DGKINEKGKDKEEKDKEK+KDTDKEKGKEKDADRKMENEKEKLKN+EGTNLDALLQRLPG
Sbjct: 421  DGKINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKMENEKEKLKNIEGTNLDALLQRLPG 480

Query: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540
            CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSR+VATLSTCMKDVSV
Sbjct: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRLVATLSTCMKDVSV 540

Query: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600
            ILLQMLEEEFNFLLNKKDQMNIETKI+NIRFIGELCKFKI+SAGLVFSCLK+CLDDFTHH
Sbjct: 541  ILLQMLEEEFNFLLNKKDQMNIETKIKNIRFIGELCKFKIASAGLVFSCLKACLDDFTHH 600

Query: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660
            NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
Sbjct: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660

Query: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720
            ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
Sbjct: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720

Query: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780
            YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
Sbjct: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780

Query: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840
            YELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
Sbjct: 781  YELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840

Query: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900
            LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
Sbjct: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900

Query: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960
            S+  KPNTEKHLDA+K PSR TSNTTSANGRDTVNGS+ENG AAHED  DSDSDTGSGTI
Sbjct: 901  SNV-KPNTEKHLDAKK-PSRATSNTTSANGRDTVNGSKENG-AAHEDGVDSDSDTGSGTI 960

Query: 961  EAEGRDDEESDLENHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQ 1020
            EAEG DDEESDLENHEDG D+EDDEDDEE GGPASDEDDEVHVR KVAEVDPREEANFEQ
Sbjct: 961  EAEGHDDEESDLENHEDGCDTEDDEDDEEAGGPASDEDDEVHVRPKVAEVDPREEANFEQ 1020

Query: 1021 ELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDE 1080
            ELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDEAL+E
Sbjct: 1021 ELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEALEE 1080

Query: 1081 DAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYND 1140
            DAGG+KEVQVKVLVKRGNKQQTKKMYIPRD ALLQSTKQKEA ELEEKQDIKRLILEYND
Sbjct: 1081 DAGGSKEVQVKVLVKRGNKQQTKKMYIPRDSALLQSTKQKEAEELEEKQDIKRLILEYND 1140

Query: 1141 REEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSRKK 1199
            REEEELNGLGSQTMNWM TG NR PTRGNNW+ASGGRSGG  HPHHRY GGGVHYSRKK
Sbjct: 1141 REEEELNGLGSQTMNWMQTGNNRAPTRGNNWDASGGRSGGSHHPHHRYPGGGVHYSRKK 1191

[Close]

BLAST of MS010041 vs. NCBI nr
Match: XP_004143811.1 (regulator of nonsense transcripts UPF2 [Cucumis sativus] >KGN51237.1 hypothetical protein Csa_008908 [Cucumis sativus])

HSP 1 Score: 2164.8 bits (5608), Expect = 0.0e+00
Identity = 1136/1203 (94.43%), Postives = 1165/1203 (96.84%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGRPGGESQPKRDDEE+VARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRPGGESQPKRDDEESVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTT+IKKLKQINEEQREGLMD+LRNVNMSKFVSEAV+AICDAKLR SDIQAAVQIC
Sbjct: 61   SIKRNTTVIKKLKQINEEQREGLMDDLRNVNMSKFVSEAVSAICDAKLRTSDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLL+ELFFVGV+ED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLMELFFVGVVED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPT QDHEEFFKSLNIT
Sbjct: 181  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTAQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQME ENAKILNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKILNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSS AEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSV+EAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSFAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVIEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KPAEN+AESEA+QGQQTSLEA+E+STDC LQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEAEQGQQTSLEAIEVSTDCLLQ 420

Query: 421  DGKIN---EKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQR 480
            DGKIN   EKGKD+EEKDKEK+ DTDKEKGKEKD DRKMENEKEKLKN+EGTNLDALLQR
Sbjct: 421  DGKINEKGEKGKDREEKDKEKNNDTDKEKGKEKDGDRKMENEKEKLKNIEGTNLDALLQR 480

Query: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540
            LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
Sbjct: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540

Query: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDF 600
            VSVILLQMLEEEF+FLLNKKDQMNIETKIRNIRFIGELCKFKI+SAGLVFSCLK+CLDDF
Sbjct: 541  VSVILLQMLEEEFSFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDF 600

Query: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660
            THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
Sbjct: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660

Query: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720
            KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH
Sbjct: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720

Query: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780
            KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE
Sbjct: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780

Query: 781  LYNYELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840
            LYNYELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS
Sbjct: 781  LYNYELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840

Query: 841  KRKLDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHE 900
            KRKLDRFFIHFQKYILSKGALPLD+EFDLQDLFAELQPNMTRYSSIEEINAAFVEL+EHE
Sbjct: 841  KRKLDRFFIHFQKYILSKGALPLDIEFDLQDLFAELQPNMTRYSSIEEINAAFVELEEHE 900

Query: 901  RSVSSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGS 960
            RSV S+DKPNTEKHLDAEK PSR TSN TSANGRDTVNGS+ENG  AHED ADSDSDTGS
Sbjct: 901  RSV-SNDKPNTEKHLDAEK-PSRATSNITSANGRDTVNGSKENG-GAHEDGADSDSDTGS 960

Query: 961  GTIEAEGRDDEESDLE-NHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEA 1020
            GTIEAEGRDDEESDLE NHEDG D+EDDEDDEE GGPASDEDDEVHVRQKV EVDPREEA
Sbjct: 961  GTIEAEGRDDEESDLENNHEDGCDTEDDEDDEEPGGPASDEDDEVHVRQKVPEVDPREEA 1020

Query: 1021 NFEQELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDE 1080
            NFEQELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDE
Sbjct: 1021 NFEQELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDE 1080

Query: 1081 ALDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLIL 1140
             LDEDAGG+KEVQVKVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLIL
Sbjct: 1081 GLDEDAGGSKEVQVKVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLIL 1140

Query: 1141 EYNDREEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYS 1199
            EYNDREEEELNGLGSQTMNWM TGGNRVPTRGNNWE SGGRSGG RHPHHRY G GVHYS
Sbjct: 1141 EYNDREEEELNGLGSQTMNWMQTGGNRVPTRGNNWEGSGGRSGGSRHPHHRYPGSGVHYS 1195

[Close]

BLAST of MS010041 vs. ExPASy Swiss-Prot
Match: F4IUX6 (Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 PE=2 SV=1)

HSP 1 Score: 1587.0 bits (4108), Expect = 0.0e+00
Identity = 852/1203 (70.82%), Postives = 1015/1203 (84.37%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDH ED+         K+DDEE +AR EEIKKS EAK+ LRQ+NLNPERPDS +LRTLDS
Sbjct: 1    MDHPEDESH-----SEKQDDEEALARLEEIKKSIEAKLTLRQNNLNPERPDSAYLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNT +IKKLKQINEEQREGLMD+LR VN+SKFVSEAV AIC+AKL++SDIQAAVQIC
Sbjct: 61   SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYK+FS  L QGLLKVFFPGKS ++L+AD+N KAMKKRSTLKLLLEL++VGVIED
Sbjct: 121  SLLHQRYKEFSASLTQGLLKVFFPGKSAEDLEADKNSKAMKKRSTLKLLLELYYVGVIED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
              IF NIIKDLTS+E L+DRD T TNLTLL SFARQGRI LGLP +GQD E+FFK L++T
Sbjct: 181  SNIFINIIKDLTSVEQLKDRDTTQTNLTLLTSFARQGRIFLGLPISGQD-EDFFKGLDVT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKK F+K F+TYYDA ++LLQSEH  L QME ENAK++NAKGEL++++ SSYEKLRKS
Sbjct: 241  ADQKKSFKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRN+SSLAEALDMQPPVMPEDG TTR++AG++ S     KD+SV E IWDDEDT+ 
Sbjct: 301  YDHLYRNISSLAEALDMQPPVMPEDG-TTRLTAGDEASPSGTVKDTSVPEPIWDDEDTKT 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEAD--QGQQTSLEAVEISTDCS 420
            FYECLPDLRAFVPAVLLGEAEPK+N+QS K  E ++ES ++  + QQT+ +  E+S D +
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSA 420

Query: 421  LQDGKIN-EKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQR 480
              D + N E+ K+KEE +KEK+KDT KEKGKEKD+++KME+EKEK K+++  N + LLQR
Sbjct: 421  SMDDRSNAEQPKEKEEVEKEKAKDTKKEKGKEKDSEKKMEHEKEKGKSLDVANFERLLQR 480

Query: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540
            LPGCVSRDLIDQLTVE+CYLNSK NRKKLV+ALFNVPRTSLELL YYSRMVATL++CMKD
Sbjct: 481  LPGCVSRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMVATLASCMKD 540

Query: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDF 600
            +  +L+QMLE+EFN L++KKDQMNIETKIRNIRFIGELCKFKI  AGLVFSCLK+CLD+F
Sbjct: 541  IPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAGLVFSCLKACLDEF 600

Query: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660
            THHNIDVACNLLETCGRFLYRSPETT+RM NML+ILMRLKNVKNLDPR STLVENAYYLC
Sbjct: 601  THHNIDVACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLC 660

Query: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720
            KPPERSAR+SKVRPPLHQY+RKLLFSDLDK +I NVL+QLRKLPWSECEQY+LKCFMKVH
Sbjct: 661  KPPERSARISKVRPPLHQYVRKLLFSDLDKDSIANVLKQLRKLPWSECEQYILKCFMKVH 720

Query: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780
            KGKYGQIHLIASLTSGLSR+HDEF VAVVDEVLEEIR+GLE+N+YG QQKR+AHMRFLGE
Sbjct: 721  KGKYGQIHLIASLTSGLSRHHDEFVVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGE 780

Query: 781  LYNYELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840
            LYNYE V+SSV+F+TLYL L++GH TSEQ+VLDPPED FR+RM+I LL+TCGHYFDRGSS
Sbjct: 781  LYNYEHVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRVRMVIILLETCGHYFDRGSS 840

Query: 841  KRKLDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHE 900
            K++LD+F IHFQ+YILSKG LPLD+EFDLQDLFA L+PNMTRYS+I+E+NAA ++L+E E
Sbjct: 841  KKRLDQFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYSTIDEVNAAILQLEERE 900

Query: 901  RSVSSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGS 960
             + SS DK + E+H D  K  ++++S+  S+NG+ T    RENG A  E   +SDSD+GS
Sbjct: 901  HA-SSGDKVSIERHSDT-KPSNKSSSDVISSNGKSTAKDIRENGEAHGE---ESDSDSGS 960

Query: 961  GTIEAEGRDDEESDLENHEDGDSEDDEDD-EEGGGPASDEDDEVHVRQKVAEVDPREEAN 1020
            G++  +G+ +EE D  NHE G    D DD ++G GP SD DD+  VRQKV  VD  E+A+
Sbjct: 961  GSVVRDGQ-NEELDDGNHERGSESGDGDDYDDGDGPGSD-DDKFRVRQKVVTVDLEEQAD 1020

Query: 1021 FEQELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRG-VGGESGDE 1080
            F+QEL+A++Q     ESM+QR+ E+RGRP LNM IPM++FEG+ +DHH  G V GE+G+E
Sbjct: 1021 FDQELKALLQ-----ESMEQRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVVGENGEE 1080

Query: 1081 ALDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLIL 1140
             LDE+ G  +EVQVKVLVKRGNKQQT++M IP DCAL+QSTKQKEAAELEEKQDIKRL+L
Sbjct: 1081 VLDEENGEQREVQVKVLVKRGNKQQTRQMLIPSDCALVQSTKQKEAAELEEKQDIKRLVL 1140

Query: 1141 EYNDREEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYS 1199
            EYN+R+EEE NGLG+Q +NW  +GG+R  TR        G+SGG RH  + + GGG  Y 
Sbjct: 1141 EYNERDEEEANGLGTQILNW-TSGGSRGSTRTGE---GSGKSGGSRHRFYYHQGGGGSYH 1180

[Close]

BLAST of MS010041 vs. ExPASy Swiss-Prot
Match: A2AT37 (Regulator of nonsense transcripts 2 OS=Mus musculus OX=10090 GN=Upf2 PE=1 SV=1)

HSP 1 Score: 626.7 bits (1615), Expect = 5.4e-178
Identity = 435/1181 (36.83%), Postives = 655/1181 (55.46%), Query Frame = 0


Query: 5    EDDGRPGGESQPKRDDEETVARQEEIKKSF----------EAKIALRQSNLN--PERPDS 64
            E++ R   E Q KR  EE  A+ +E ++S           + +  LR  N N    RP+ 
Sbjct: 98   EEEERKKQEEQAKRQQEEAAAQLKEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEE 157

Query: 65   GFLRTLDSSIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASD 124
             F   LDSS+K+NT  +KKLK I E+QR+ L  +   +N+SK+++EAVA+I +AKL+ SD
Sbjct: 158  NFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKLSD 217

Query: 125  IQAAVQICSLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLEL 184
            +  A  +CSL HQRY DF+P L+Q   K F   K       ++     K R+ L+ + EL
Sbjct: 218  VNCAAHLCSLFHQRYSDFAPSLLQVWKKHFEARKE------EKTPNITKLRTDLRFIAEL 277

Query: 185  FFVGVIEDCAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQ-GRILLGLPP------ 244
              VG+  D    + I + L SI +  DR++  T+++++ SF R  G  + GL P      
Sbjct: 278  TIVGIFTDKEGLSLIYEQLKSIIN-ADRESH-THVSVVISFCRHCGDDIAGLVPRKVKSA 337

Query: 245  TGQDHEEFFKSLNITADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGE 304
              + +  F  S  I+ ++++ F+ +   Y+ + ++ L+ +H  L+  E +N +IL++KGE
Sbjct: 338  AEKFNLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGE 397

Query: 305  LNDENVSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRV-SAGEDVSSPAAGK 364
            L+++    YE+   SY  L  N  SLA+ LD   P +P+D  T      G D+ +P    
Sbjct: 398  LSEDRHKQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPG 457

Query: 365  DSSVLEAIWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQ 424
            +  +   IW+DED R FYE L DL+AFVPA+L  + E   N  S K     A+   D  +
Sbjct: 458  EYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSQNKDSNKDDSKEAKEPKDNKE 517

Query: 425  QTSLEAVEISTD-CSLQDGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKL 484
             +S + +E+  +   + D  +  +G D+ E   +K  D  +++ +E      ++      
Sbjct: 518  ASSPDDLELELENLEINDDTLELEGADEAEDLTKKLLDEQEQEDEEASTGSHLK------ 577

Query: 485  KNVEGTNLDALLQRLPGCVSRDLIDQLTVEFCY-LNSKANRKKLVRALFNVPRTSLELLP 544
                   +DA LQ+LP CV+RDLID+  ++FC  +N+KANRKKLVRALF VPR  L+LLP
Sbjct: 578  -----LIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFIVPRQRLDLLP 637

Query: 545  YYSRMVATLSTCMKDVSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISS 604
            +Y+R+VATL  CM DV+  L  ML  +F F + KKDQ+NIETK + +RFIGEL KFK+ +
Sbjct: 638  FYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFT 697

Query: 605  AGLVFSCLKSCLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNL 664
                  CLK  L DF+HH+I++AC LLETCGRFL+RSPE+ +R + +LE +MR K   +L
Sbjct: 698  KNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHL 757

Query: 665  DPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPW 724
            D R+ T+VENAYY C PP     V K RPPL +Y+RKLL+ DL K   E VLRQ+RKLPW
Sbjct: 758  DARYVTMVENAYYYCNPPPAEKTVRKKRPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPW 817

Query: 725  --SECEQYLLKCFMKVHKGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVN 784
               E + Y++ C + +   KY  IH +A+L +GL  Y ++  + VVD VLE+IRLG+EVN
Sbjct: 818  QDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVN 877

Query: 785  DYGMQQKRIAHMRFLGELYNYELVESSVVFDTLYLILVFG-HGTSEQDVLDPPEDTFRIR 844
                 Q+RI+  +FLGELYNY +VES+V+F TLY    FG +       LDPPE  FRIR
Sbjct: 878  QPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIR 937

Query: 845  MIITLLQTCGHYFDRGSSKRKLDRFFIHFQKYILSKGAL---------PLDVEFDLQDLF 904
            ++ T+L TCG YFDRGSSKRKLD F ++FQ+Y+  K +L         P+D+++ + D  
Sbjct: 938  LVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTL 997

Query: 905  AELQPNMTRYSSIEEINAAFVELDEHERS-VSSSDKPNTEKHLDAEKTPSRTTSNTTSAN 964
              L+P +   +S+EE   +  ++ + ER  +      N     D E   S T       +
Sbjct: 998  ELLRPKIKLCNSLEE---SIRQVQDLEREFLIKLGLVN-----DKESKDSMTEGENLEED 1057

Query: 965  GRDTVNGSRENGAAAHEDVADSDSDTGSGTIEAEGRDDEESDLENHEDGDSEDDEDDE-- 1024
              +   G+     + +E   +   +      E EG ++EE + +   D + E++ D+E  
Sbjct: 1058 EEEEEGGAETEEQSGNESEVNEPEEEEGSEEEEEGEEEEEENTDYLTDSNKENETDEENA 1117

Query: 1025 ----EGGGPASDEDDEVHVRQKVAEVDPREEANFEQELRAVMQARTIFESMDQRRQEIRG 1084
                +GGG              +  V   E+ +F Q L  +M      E++ QR  E   
Sbjct: 1118 EVMIKGGG--------------LKHVPCVEDEDFIQALDKMM-----LENLQQRSGESVK 1177

Query: 1085 RPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDEDAGGTKEVQVKVLVKRGNKQQTKK 1144
               L++ IP++L +   R     G GGE   E+ D        +   +L ++GNKQQ K 
Sbjct: 1178 VHQLDVAIPLHL-KSQLRKGPPLG-GGEGETESAD-------TMPFVMLTRKGNKQQFKI 1223

[Close]

BLAST of MS010041 vs. ExPASy Swiss-Prot
Match: Q9HAU5 (Regulator of nonsense transcripts 2 OS=Homo sapiens OX=9606 GN=UPF2 PE=1 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 9.2e-178
Identity = 433/1190 (36.39%), Postives = 661/1190 (55.55%), Query Frame = 0


Query: 4    HEDDGRPGGESQPKRDDEETVA-----RQEEIKKSFEA------KIALRQSNLN--PERP 63
            H+++ R   E Q KR  EE  A     ++E I+   EA      +  LR  N N    RP
Sbjct: 97   HQEEERKKQEEQAKRQQEEEAAAQMKEKEESIQLHQEAWERHHLRKELRSKNQNAPDSRP 156

Query: 64   DSGFLRTLDSSIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRA 123
            +  F   LDSS+K+NT  +KKLK I E+QR+ L  +   +N+SK+++EAVA+I +AKL+ 
Sbjct: 157  EENFFSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKI 216

Query: 124  SDIQAAVQICSLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLL 183
            SD+  AV +CSL HQRY DF+P L+Q   K F   K       ++     K R+ L+ + 
Sbjct: 217  SDVNCAVHLCSLFHQRYADFAPSLLQVWKKHFEARKE------EKTPNITKLRTDLRFIA 276

Query: 184  ELFFVGVIEDCAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQ-GRILLGLPP---- 243
            EL  VG+  D    + I + L +I +  DR++  T+++++ SF R  G  + GL P    
Sbjct: 277  ELTIVGIFTDKEGLSLIYEQLKNIIN-ADRESH-THVSVVISFCRHCGDDIAGLVPRKVK 336

Query: 244  --TGQDHEEFFKSLNITADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAK 303
                + +  F  S  I+ ++++ F+ +   Y+ + ++ L+ +H  L+  E +N +IL++K
Sbjct: 337  SAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSK 396

Query: 304  GELNDENVSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRV-SAGEDVSSPAA 363
            GEL+++    YE+   SY  L  N  SLA+ LD   P +P+D  T      G D+ +P  
Sbjct: 397  GELSEDRHKQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGK 456

Query: 364  GKDSSVLEAIWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKA-NDQSTKPAENMAESEAD 423
              +  +   IW+DED R FYE L DL+AFVPA+L  + E    N +S K     A+   +
Sbjct: 457  PGEYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNKESNKDDTKEAKESKE 516

Query: 424  QGQQTSLEAVEISTD-CSLQDGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEK 483
              + +S + +E+  +   + D  +  +G D+ E   +K  D  +++ +E      ++   
Sbjct: 517  NKEVSSPDDLELELENLEINDDTLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLK--- 576

Query: 484  EKLKNVEGTNLDALLQRLPGCVSRDLIDQLTVEFCY-LNSKANRKKLVRALFNVPRTSLE 543
                      +DA LQ+LP CV+RDLID+  ++FC  +N+KANRKKLVRALF VPR  L+
Sbjct: 577  --------LIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFIVPRQRLD 636

Query: 544  LLPYYSRMVATLSTCMKDVSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFK 603
            LLP+Y+R+VATL  CM DV+  L  ML  +F F + KKDQ+NIETK + +RFIGEL KFK
Sbjct: 637  LLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIGELTKFK 696

Query: 604  ISSAGLVFSCLKSCLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNV 663
            + +      CLK  L DF+HH+I++AC LLETCGRFL+RSPE+ +R + +LE +MR K  
Sbjct: 697  MFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQA 756

Query: 664  KNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRK 723
             +LD R+ T+VENAYY C PP     V K RPPL +Y+RKLL+ DL K   E VLRQ+RK
Sbjct: 757  MHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQMRK 816

Query: 724  LPW--SECEQYLLKCFMKVHKGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGL 783
            LPW   E + Y++ C + +   KY  IH +A+L +GL  Y ++  + VVD VLE+IRLG+
Sbjct: 817  LPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGM 876

Query: 784  EVNDYGMQQKRIAHMRFLGELYNYELVESSVVFDTLYLILVFG-HGTSEQDVLDPPEDTF 843
            EVN     Q+RI+  +FLGELYNY +VES+V+F TLY    FG +       LDPPE  F
Sbjct: 877  EVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLF 936

Query: 844  RIRMIITLLQTCGHYFDRGSSKRKLDRFFIHFQKYILSKGAL---------PLDVEFDLQ 903
            RIR++ T+L TCG YFDRGSSKRKLD F ++FQ+Y+  K +L         P+D+++ + 
Sbjct: 937  RIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMIS 996

Query: 904  DLFAELQPNMTRYSSIEEINAAFVELDEH-------ERSVSSSDKPNTEKHLDAEKTPSR 963
            D    L+P +   +S+EE      +L+              S D     ++L+ ++    
Sbjct: 997  DTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDSMTEGENLEEDEEEEE 1056

Query: 964  TTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTIEAEGRDDEESDLENHEDGDS 1023
              + T   +G ++             +V + + + GS   + EG ++EE + +   D + 
Sbjct: 1057 GGAETEEQSGNES-------------EVNEPEEEEGSDNDDDEGEEEEEENTDYLTDSNK 1116

Query: 1024 EDDEDDE------EGGGPASDEDDEVHVRQKVAEVDPREEANFEQELRAVMQARTIFESM 1083
            E++ D+E      +GGG              +  V   E+ +F Q L  +M      E++
Sbjct: 1117 ENETDEENTEVMIKGGG--------------LKHVPCVEDEDFIQALDKMM-----LENL 1176

Query: 1084 DQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDEDAGGTKEVQVKVLVK 1143
             QR  E      L++ IP++L    ++   G  +GG  G      +A     +   +L +
Sbjct: 1177 QQRSGESVKVHQLDVAIPLHL---KSQLRKGPPLGGGEG------EAESADTMPFVMLTR 1226

Query: 1144 RGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEE 1145
            +GNKQQ K + +P    L  +   ++ AE EE+  +K+L L+ N+R+E+E
Sbjct: 1237 KGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQE 1226

[Close]

BLAST of MS010041 vs. ExPASy Swiss-Prot
Match: O13824 (Nonsense-mediated mRNA decay protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=upf2 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 6.3e-70
Identity = 292/1172 (24.91%), Postives = 520/1172 (44.37%), Query Frame = 0


Query: 24   VARQEEIKKSFEAKIALRQSNLNPERPDSGFLRT---LDSSIKRNTTIIKKLK-QINEEQ 83
            ++R+E+IKK     +  R+     +  D     T   LDSS+K+NT  +K+ K  +  E 
Sbjct: 1    MSREEQIKK-LNQYLDNRELAFRAKDGDKNIFHTESQLDSSLKKNTAFMKRCKSSLTSEN 60

Query: 84   REGLMDELRNVNMSKFVSEAVAAICDAKLR---ASDIQAAVQICSLLHQRYKD-FSPCLI 143
             +  + E++ +++ KF+ E  AAI +  ++     DI ++V+I   L+ R+   F+  ++
Sbjct: 61   YDSFIKEIKTLSLKKFIPEITAAIVEGMMKCKATKDILSSVKIVWALNLRFSTAFTGPML 120

Query: 144  QGLLKVFFPG---------------KSGDELDADRNLKAMKKRSTLKLLLELFFVGVI-- 203
              L    +P                   +  + DR+   +K R  L+ L+E +  GV+  
Sbjct: 121  ANLYCALYPNPGYSLCHESYFELKQNENEVSEKDRSSHLLKVRPLLRFLIEFWLNGVVGT 180

Query: 204  -EDCAIF------------------NNIIKDLTSI--EHLRDRDATLTNLTLLASFARQG 263
             ED   +                   N+ K L  +    L D       L +L S  R  
Sbjct: 181  PEDFVSYLPSTDSNDKKFRKPWFEEQNLKKPLVVLLFNDLMDTRFGFLLLPVLTSLVRTF 240

Query: 264  RILLGLPPTGQDHE--EFFKSLNITADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHE 323
               L      +D E  E    LN     + + RK  ++Y D      Q   +   ++  +
Sbjct: 241  SCELFTTEDFEDKETLELVNRLNPVV-WRTYLRKSLNSYVDKLEVYCQKRKSLFEELNKQ 300

Query: 324  NAKILNAKGELNDENVSSYEKLRKSYDHLYRNVSSLAEALDMQPPV-MPEDGHTTRVSAG 383
              +    + + N+E         KS +  + + +SL+E L+ +    + E     + S+G
Sbjct: 301  YQEQSIIRADPNNEKFQRLANFSKSIESEFSSYASLSEVLNRKASEDLLELNFMEKASSG 360

Query: 384  EDVSSPAAGK--DSSVLEA--IWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKANDQSTK 443
             +    A+G+  +S+ +E   +WDD +   FYE  P+                 N+ S  
Sbjct: 361  TNSVFNASGERSESANVETAQVWDDREQYFFYEVFPNF----------------NEGSIA 420

Query: 444  PAENMAESEADQGQQTSLEAVEISTDCSLQDGKINEKGKDKEEKDKEKSKDTDKEKGKEK 503
              ++     + +G ++S E               N K   KE+  K+ + D +  +    
Sbjct: 421  EMKSSIYESSQEGIRSSSE---------------NNK---KEDDLKDSTGDLNTTQ---- 480

Query: 504  DADRKMENEKEKLKNVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKANRKKLVRAL 563
                              + +D  L +LP  VS +L +++ +EF  LN+KA+R +L++AL
Sbjct: 481  ----------------VSSRVDNFLLKLPSMVSLELTNEMALEFYDLNTKASRNRLIKAL 540

Query: 564  FNVPRTSLELLPYYSRMVATLSTCMKDVSVILLQMLEEEFNFLLNKKDQMNIETKIRNIR 623
              +PRTS  L+PYY R+   LS    + S  L+      F  ++++K +   +T++  +R
Sbjct: 541  CTIPRTSSFLVPYYVRLARILSQLSSEFSTSLVDHARHSFKRMIHRKAKHEYDTRLLIVR 600

Query: 624  FIGELCKFKISSAGLVFSCLKSCLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANML 683
            +I EL KF++    +VF C K C+++FT  +++V   LLE+CGRFL R PET ++M + L
Sbjct: 601  YISELTKFQLMPFHMVFECYKLCINEFTPFDLEVLALLLESCGRFLLRYPETKLQMQSFL 660

Query: 684  EILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSAI 743
            E + + K    L  +   ++ENA +   PP+R   VSK +    +++  L+   L    +
Sbjct: 661  EAIQKKKLASALASQDQLVLENALHFVNPPKRGIIVSKKKSLKEEFLYDLIQIRLKDDNV 720

Query: 744  ENVLRQLRKLPWSECEQYLLKCFMKVHKGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVL 803
               L  LRK  W +  Q L    M+V   KY  ++ +A L S L ++H EF + V+D+ L
Sbjct: 721  FPTLLLLRKFDWKDDYQILYNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVIDDTL 780

Query: 804  EEIRLGLEVNDYGMQQKRIAHMRFLGELYNYELVESSVVFDTLYLILVFGHGTS-----E 863
            E +   +  +D+  +QKR+A  RF+ EL    +++   + + L+ +L      S      
Sbjct: 781  ESLFSAVNNSDHVEKQKRLAQARFISELCVIHMLDVRAITNFLFHLLPLEKFESFLTMKA 840

Query: 864  QDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRKLDRFFIHFQKYILSKGALPLDVEFD 923
              + +   D FR+R+I+ +LQTCG    R  +K+ +  + + +Q Y L +  +PLD+ ++
Sbjct: 841  STLTNINNDMFRLRLIVVVLQTCGPSIIRSKTKKTMLTYLLAYQCYFLIQPEMPLDMLYE 900

Query: 924  LQDLFAELQPNMTRYSSIEEINAAFVELDEHERSVSSSDKPNTEKHLDAEKTPSRTTSNT 983
             +D+   ++P+M  Y   EE   A       ER  + SD        D E+  +R     
Sbjct: 901  FEDVIGYVRPSMKVYMHYEEARNALT-----ERLQAISD--------DWEEDDTRPVFQ- 960

Query: 984  TSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTIEAEGRDDEESDLENHEDGDSEDDED 1043
              AN  D    S E      ED++D +S+T          D+E S LE  +  DSED+  
Sbjct: 961  -GANDGDI--SSNEESVYLPEDISD-ESET----------DEESSGLEESDLLDSEDE-- 1020

Query: 1044 DEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQELRAVMQARTIFESMDQRRQEIRGRP 1103
                     D D+E+ + +++ E        FE         R   ES+  R  E    P
Sbjct: 1021 ---------DIDNEMQLSRELDE-------EFE---------RLTNESLLTRMHE--KNP 1048

Query: 1104 TLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDEDAGGTKEVQVKVLVKRGNKQQTKKMY 1138
              ++ +P+                G       +E A  +  V   +L KRGNKQ+++ + 
Sbjct: 1081 GFDVPLPLR-----------ASSLGSPYVTRNEESASESSHVMFTLLTKRGNKQRSQYLE 1048

[Close]

BLAST of MS010041 vs. ExPASy Swiss-Prot
Match: P38798 (Nonsense-mediated mRNA decay protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NMD2 PE=1 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 4.1e-61
Identity = 277/1164 (23.80%), Postives = 490/1164 (42.10%), Query Frame = 0


Query: 56   RTLDSSIKRNTTIIKKLKQ-INEEQREGLMDELRNVNMSKFVSEAVAAICDAKL----RA 115
            + LDSSIKRNT  IKKLK+   +     L+ +L   ++ K++SE +  + +  L    + 
Sbjct: 28   KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKN 87

Query: 116  SDIQAAVQICSLLHQRYKD-FSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLL 175
             D+ AAV+I S LHQR+   F+  L+   L+ F       E + D   +  + +  L++ 
Sbjct: 88   DDVIAAVEIISGLHQRFNGRFTSPLLGAFLQAFENPSVDIESERDELQRITRVKGNLRVF 147

Query: 176  LELFFVGV------IEDCAIFNNII------KDLTSIEHLRDRDATLTNLTLLASFARQG 235
             EL+ VGV      IE      N +      KD      LR+       L    + A   
Sbjct: 148  TELYLVGVFRTLDDIESKDAIPNFLQKKTGRKDPLLFSILREILNYKFKLGFTTTIAT-- 207

Query: 236  RILLGLPPTGQDHEEFFKSLNITADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENA 295
              +    P  +D +  +  L   +  K   + +F  + DA        H  + +++ E+ 
Sbjct: 208  AFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQ 267

Query: 296  KILNAKGELNDENVSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDV 355
            K     G+L DE V  Y+KL   +     +  +L E   ++   +PE    +     E  
Sbjct: 268  KCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLE---IPELEGASNDDLKETA 327

Query: 356  SSPAAGKDSSVLEAIWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAE 415
            S     +     + +W++EDTR FYE LPD+                             
Sbjct: 328  SPMITNQILPPNQRLWENEDTRKFYEILPDI----------------------------- 387

Query: 416  SEADQGQQTSLEAVEISTDCSLQDGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKME 475
                                                                K  +    
Sbjct: 388  ---------------------------------------------------SKTVEESQS 447

Query: 476  NEKEKLKNVEGTNLDALLQRLPGCVSRDLIDQLTVEF--CYLNSKANRKKLVRALFNVPR 535
            ++ EK  NV   N++     L     +D+ID L+  +   YL++KA R ++++  F +  
Sbjct: 448  SKTEKDSNVNSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILK--FFMET 507

Query: 536  TSLELLPYYSRMVATLSTCMKDVSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGEL 595
                 LP YSR +AT S  M ++    +  L+  F   L+       +  ++NI F  E+
Sbjct: 508  QDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSN-----KINVKNIIFFSEM 567

Query: 596  CKFKISSAGLVFSCLKSCLDDF-THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILM 655
             KF++  + ++F  +++ +      +N+++   LLE  G+FL   PE    M  M++++ 
Sbjct: 568  IKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIK 627

Query: 656  RLKNVKNLDPRHSTLVENAYYLCKPPE-RSARVS-KVRPPLHQYIRKLLFSDLDKSAIEN 715
              KN + L+    + +EN   L  PP  +S  V+ K   P  Q+ R L+ S+L     ++
Sbjct: 628  DKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTITPEQQFYRILIRSELSSLDFKH 687

Query: 716  VLRQLRKLPWSE--CEQYLLKCFMKVHKGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVL 775
            +++ +RK  W +   ++ L   F K HK  Y  I L+  +  GL  Y  +F +  +D+VL
Sbjct: 688  IVKLVRKAHWDDVAIQKVLFSLFSKPHKISYQNIPLLTKVLGGLYSYRRDFVIRCIDQVL 747

Query: 776  EEIRLGLEVNDYGMQQKRIAHMRFLGELYNYELVESSVVFDTLYLILVFGHGTSEQDVL- 835
            E I  GLE+NDYG    RI+++R+L E++N+E+++S V+ DT+Y I+ FGH  ++ +   
Sbjct: 748  ENIERGLEINDYGQNMHRISNVRYLTEIFNFEMIKSDVLLDTIYHIIRFGHINNQPNPFY 807

Query: 836  ----DPPEDTFRIRMIITLLQTCGHYFDRGSSKRKLDRFFIHFQKYILSKGALPLDVEFD 895
                DPP++ FRI+++ T+L          + K KL   F  +  +I  +  LP + EF 
Sbjct: 808  LNYSDPPDNYFRIQLVTTILLNINRTPAAFTKKCKLLLRFFEYYTFI-KEQPLPKETEFR 867

Query: 896  LQDLFA-----------ELQPNMTRYSS-----IEEINAAFVELDEHE------------ 955
            +   F            E   N+   +S     ++ +NA   + D  +            
Sbjct: 868  VSSTFKKYENIFGNTKFERSENLVESASRLESLLKSLNAIKSKDDRVKGSSASIHNGKES 927

Query: 956  ----RSVSSSDKPNTEKH------LDAEKTPSRTTSNTTSANGRDTV---NGSRENGAAA 1015
                 S++  D+   +++      L  ++    +T NT SA G+          E+    
Sbjct: 928  AVPIESITEDDEDEDDENDDGVDLLGEDEDAEISTPNTESAPGKHQAKQDESEDEDDEDD 987

Query: 1016 HEDVADSDSDTGSGTIEAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQ 1075
             ED  D D D      E +  DDE+ D E+ +D + ED + D E GG   D D ++ +++
Sbjct: 988  DEDDDDDDDDDDDDGEEGDEDDDEDDDDEDDDDEEEEDSDSDLEYGGDL-DADRDIEMKR 1047

Query: 1076 KVAEVDPR----EEANFEQELRAVMQARTIFESMDQRRQE--------IRGRPTLNMMIP 1135
               E + +    EE   E+EL    Q + + ES+D R+ E        +  +P +++  P
Sbjct: 1048 MYEEYERKLKDEEERKAEEELERQFQ-KMMQESIDARKSEKVVASKIPVISKP-VSVQKP 1085

Query: 1136 MNLFEGTTRDHHGRGVGGESGDEALDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCAL 1137
            + L +              S  +   E+    K++    L K G K Q++ + +P D   
Sbjct: 1108 LLLKKSEE----------PSSSKETYEELSKPKKIAFTFLTKSGKKTQSRILQLPTDVKF 1085

[Close]

BLAST of MS010041 vs. ExPASy TrEMBL
Match: A0A6J1BVY0 (regulator of nonsense transcripts UPF2 OS=Momordica charantia OX=3673 GN=LOC111006232 PE=4 SV=1)

HSP 1 Score: 2265.3 bits (5869), Expect = 0.0e+00
Identity = 1188/1198 (99.17%), Postives = 1189/1198 (99.25%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGR GGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRLGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC
Sbjct: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
            CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
Sbjct: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420

Query: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480
            DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG
Sbjct: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480

Query: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540
            CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV
Sbjct: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540

Query: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600
            ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH
Sbjct: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600

Query: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660
            NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
Sbjct: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660

Query: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720
            ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
Sbjct: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720

Query: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780
            YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
Sbjct: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780

Query: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840
            YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
Sbjct: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840

Query: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900
            LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
Sbjct: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900

Query: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960
            SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI
Sbjct: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960

Query: 961  EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE 1020
            EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE
Sbjct: 961  EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE 1020

Query: 1021 LRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDED 1080
            LRAVMQ     ESMDQRRQEIRGRPTLNMMIPMNLFEG TRDHHGRGVGGESGDEALDED
Sbjct: 1021 LRAVMQ-----ESMDQRRQEIRGRPTLNMMIPMNLFEG-TRDHHGRGVGGESGDEALDED 1080

Query: 1081 AGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDR 1140
            AGGTKEVQVKVLVKRGNKQQTKKM+IPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDR
Sbjct: 1081 AGGTKEVQVKVLVKRGNKQQTKKMFIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDR 1140

Query: 1141 EEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSRKK 1199
            EEEELNGLGSQTMNWM TGGNRVPTRGNNWE SGGRSGGPRHPHHRYIGGGVHYSRKK
Sbjct: 1141 EEEELNGLGSQTMNWMQTGGNRVPTRGNNWEGSGGRSGGPRHPHHRYIGGGVHYSRKK 1192

[Close]

BLAST of MS010041 vs. ExPASy TrEMBL
Match: A0A1S3CJK4 (LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 OS=Cucumis melo OX=3656 GN=LOC103501680 PE=4 SV=1)

HSP 1 Score: 2165.6 bits (5610), Expect = 0.0e+00
Identity = 1134/1202 (94.34%), Postives = 1163/1202 (96.76%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTT+IKKLKQINEEQREGLMDELRNVNMSKFVSEAV+AICDAKLR SDIQAAVQIC
Sbjct: 61   SIKRNTTVIKKLKQINEEQREGLMDELRNVNMSKFVSEAVSAICDAKLRTSDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLL+ELFFVGV+ED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLMELFFVGVVED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPT QDHEEFFKSLNIT
Sbjct: 181  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTAQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQ+E ENAKILNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQLEQENAKILNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSS AEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSV+EAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSFAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVIEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KP EN+AESEA+QGQQTSLEA+E+STDC LQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPTENLAESEAEQGQQTSLEAIEVSTDCPLQ 420

Query: 421  DGKIN---EKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQR 480
            DGKIN   EKGKD+EEKDKEK+ DTDKEKGKEKD DRKMENEK KLKN+EGTNLDALLQR
Sbjct: 421  DGKINEKGEKGKDREEKDKEKNNDTDKEKGKEKDGDRKMENEKXKLKNIEGTNLDALLQR 480

Query: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540
            LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
Sbjct: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540

Query: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDF 600
            VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKI+SAGLVFSCLK+CLDDF
Sbjct: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDF 600

Query: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660
            THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
Sbjct: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660

Query: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720
            KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH
Sbjct: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720

Query: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780
            KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE
Sbjct: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780

Query: 781  LYNYELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840
            LYNYELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS
Sbjct: 781  LYNYELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840

Query: 841  KRKLDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHE 900
            KRKLDRFFIHFQKYILSKGALPLD+EFDLQDLFAELQPNMTRYSSIEEINAAFVEL+EHE
Sbjct: 841  KRKLDRFFIHFQKYILSKGALPLDIEFDLQDLFAELQPNMTRYSSIEEINAAFVELEEHE 900

Query: 901  RSVSSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGS 960
            RSV S+DKPNTEKHLDAEK PSR TS TTSANGRD VNGS+EN + AHED ADSDSDTGS
Sbjct: 901  RSV-SNDKPNTEKHLDAEK-PSRATSTTTSANGRDRVNGSKEN-SGAHEDGADSDSDTGS 960

Query: 961  GTIEAEGRDDEESDLENHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEAN 1020
            GTIEAEGRDDEESDLENHEDG D+EDDEDDEE GGPASDEDDEVHVRQKV EVDPREEAN
Sbjct: 961  GTIEAEGRDDEESDLENHEDGCDTEDDEDDEEPGGPASDEDDEVHVRQKVPEVDPREEAN 1020

Query: 1021 FEQELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEA 1080
            FEQELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDE 
Sbjct: 1021 FEQELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEG 1080

Query: 1081 LDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILE 1140
            LDEDAGG+KEVQVKVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILE
Sbjct: 1081 LDEDAGGSKEVQVKVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILE 1140

Query: 1141 YNDREEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSR 1199
            YNDREEEELNGLGSQTMNWM TGGNRVPTRGNNWEASGGRSGG RHPHHRY G G+HYSR
Sbjct: 1141 YNDREEEELNGLGSQTMNWMQTGGNRVPTRGNNWEASGGRSGGSRHPHHRYPGSGMHYSR 1194

[Close]

BLAST of MS010041 vs. ExPASy TrEMBL
Match: A0A0A0KS34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497020 PE=4 SV=1)

HSP 1 Score: 2164.8 bits (5608), Expect = 0.0e+00
Identity = 1136/1203 (94.43%), Postives = 1165/1203 (96.84%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGRPGGESQPKRDDEE+VARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRPGGESQPKRDDEESVARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTT+IKKLKQINEEQREGLMD+LRNVNMSKFVSEAV+AICDAKLR SDIQAAVQIC
Sbjct: 61   SIKRNTTVIKKLKQINEEQREGLMDDLRNVNMSKFVSEAVSAICDAKLRTSDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLL+ELFFVGV+ED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLMELFFVGVVED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPT QDHEEFFKSLNIT
Sbjct: 181  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTAQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQME ENAKILNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKILNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSS AEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSV+EAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSFAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVIEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KPAEN+AESEA+QGQQTSLEA+E+STDC LQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEAEQGQQTSLEAIEVSTDCLLQ 420

Query: 421  DGKIN---EKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQR 480
            DGKIN   EKGKD+EEKDKEK+ DTDKEKGKEKD DRKMENEKEKLKN+EGTNLDALLQR
Sbjct: 421  DGKINEKGEKGKDREEKDKEKNNDTDKEKGKEKDGDRKMENEKEKLKNIEGTNLDALLQR 480

Query: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540
            LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
Sbjct: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540

Query: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDF 600
            VSVILLQMLEEEF+FLLNKKDQMNIETKIRNIRFIGELCKFKI+SAGLVFSCLK+CLDDF
Sbjct: 541  VSVILLQMLEEEFSFLLNKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDF 600

Query: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660
            THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
Sbjct: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660

Query: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720
            KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH
Sbjct: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720

Query: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780
            KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE
Sbjct: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780

Query: 781  LYNYELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840
            LYNYELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS
Sbjct: 781  LYNYELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840

Query: 841  KRKLDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHE 900
            KRKLDRFFIHFQKYILSKGALPLD+EFDLQDLFAELQPNMTRYSSIEEINAAFVEL+EHE
Sbjct: 841  KRKLDRFFIHFQKYILSKGALPLDIEFDLQDLFAELQPNMTRYSSIEEINAAFVELEEHE 900

Query: 901  RSVSSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGS 960
            RSV S+DKPNTEKHLDAEK PSR TSN TSANGRDTVNGS+ENG  AHED ADSDSDTGS
Sbjct: 901  RSV-SNDKPNTEKHLDAEK-PSRATSNITSANGRDTVNGSKENG-GAHEDGADSDSDTGS 960

Query: 961  GTIEAEGRDDEESDLE-NHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEA 1020
            GTIEAEGRDDEESDLE NHEDG D+EDDEDDEE GGPASDEDDEVHVRQKV EVDPREEA
Sbjct: 961  GTIEAEGRDDEESDLENNHEDGCDTEDDEDDEEPGGPASDEDDEVHVRQKVPEVDPREEA 1020

Query: 1021 NFEQELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDE 1080
            NFEQELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDE
Sbjct: 1021 NFEQELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDE 1080

Query: 1081 ALDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLIL 1140
             LDEDAGG+KEVQVKVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLIL
Sbjct: 1081 GLDEDAGGSKEVQVKVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLIL 1140

Query: 1141 EYNDREEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYS 1199
            EYNDREEEELNGLGSQTMNWM TGGNRVPTRGNNWE SGGRSGG RHPHHRY G GVHYS
Sbjct: 1141 EYNDREEEELNGLGSQTMNWMQTGGNRVPTRGNNWEGSGGRSGGSRHPHHRYPGSGVHYS 1195

[Close]

BLAST of MS010041 vs. ExPASy TrEMBL
Match: A0A6J1FEV2 (regulator of nonsense transcripts UPF2-like OS=Cucurbita moschata OX=3662 GN=LOC111445073 PE=4 SV=1)

HSP 1 Score: 2161.3 bits (5599), Expect = 0.0e+00
Identity = 1135/1199 (94.66%), Postives = 1162/1199 (96.91%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGRP  ESQPKRDDEET ARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRPVSESQPKRDDEETAARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTTIIKKLKQIN+EQREGLMDELRNVNMSKFVSEAV+AICDAKLRASDIQAAVQIC
Sbjct: 61   SIKRNTTIIKKLKQINDEQREGLMDELRNVNMSKFVSEAVSAICDAKLRASDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGV+ED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVVED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
Sbjct: 181  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQME ENAK+LNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKLLNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSSLAEA+DMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSLAEAVDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KPAEN+AESEADQGQQTSLEAVEISTD  LQ
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGQQTSLEAVEISTDSLLQ 420

Query: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480
            DGKINEKGKDKEEKDKEK+KDTDKEKGKEKDADRKMENEKEKLKN+EGTNLDALLQRLPG
Sbjct: 421  DGKINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKMENEKEKLKNIEGTNLDALLQRLPG 480

Query: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540
            CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSR+VATLSTCMKDVSV
Sbjct: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRLVATLSTCMKDVSV 540

Query: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600
            ILLQMLEEEFNFLLNKKDQMNIETKI+NIRFIGELCKFKI+SAGLVFSCLK+CLDDFTHH
Sbjct: 541  ILLQMLEEEFNFLLNKKDQMNIETKIKNIRFIGELCKFKIASAGLVFSCLKACLDDFTHH 600

Query: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660
            NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
Sbjct: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660

Query: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720
            ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
Sbjct: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720

Query: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780
            YG IHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
Sbjct: 721  YGHIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780

Query: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840
            YELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
Sbjct: 781  YELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840

Query: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900
            LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
Sbjct: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900

Query: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960
            S+  KPN EKHLDA+K PSR TSNTTSANGRDT+NGS+ENG AAHED  DSDSDTGSGTI
Sbjct: 901  SNV-KPNIEKHLDAKK-PSRATSNTTSANGRDTMNGSKENG-AAHEDGVDSDSDTGSGTI 960

Query: 961  EAEGRDDEESDLENHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQ 1020
            EAEG DDEESDLENHEDG D+EDDEDDEE GGPASDEDDEVHVR KVAEVDPREEANFEQ
Sbjct: 961  EAEGHDDEESDLENHEDGCDTEDDEDDEEAGGPASDEDDEVHVRPKVAEVDPREEANFEQ 1020

Query: 1021 ELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDE 1080
            ELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDEAL+E
Sbjct: 1021 ELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEALEE 1080

Query: 1081 DAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYND 1140
            DAGG+KEVQVKVLVKRGNKQQTKKMYIPRD ALLQSTKQKEA ELEEKQDIKRLILEYND
Sbjct: 1081 DAGGSKEVQVKVLVKRGNKQQTKKMYIPRDSALLQSTKQKEAEELEEKQDIKRLILEYND 1140

Query: 1141 REEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSRKK 1199
            REEEELNGLGSQTMNWM TG NR PTRGNNW+ASGGRSGG  HPHHRY GGG+HYSRKK
Sbjct: 1141 REEEELNGLGSQTMNWMQTGNNRAPTRGNNWDASGGRSGGSHHPHHRYPGGGMHYSRKK 1191

[Close]

BLAST of MS010041 vs. ExPASy TrEMBL
Match: A0A6J1JX56 (regulator of nonsense transcripts UPF2-like OS=Cucurbita maxima OX=3661 GN=LOC111489130 PE=4 SV=1)

HSP 1 Score: 2160.6 bits (5597), Expect = 0.0e+00
Identity = 1135/1199 (94.66%), Postives = 1162/1199 (96.91%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDHHEDDGR   ESQPKRDDEET ARQEEIKKSFEAK+ALRQSNLNPERPDSGFLRTLDS
Sbjct: 1    MDHHEDDGRSVSESQPKRDDEETAARQEEIKKSFEAKMALRQSNLNPERPDSGFLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNTTIIKKLKQIN+EQREGLMDELRNVNMSKFVSEAV+AICDAKLRASDIQAAVQIC
Sbjct: 61   SIKRNTTIIKKLKQINDEQREGLMDELRNVNMSKFVSEAVSAICDAKLRASDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGV+ED
Sbjct: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVVED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
             AIFNNIIKDLTSIEHLRDRD TLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
Sbjct: 181  SAIFNNIIKDLTSIEHLRDRDTTLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKKFFRK FHTYYDAA+ELLQSEHTSLRQME ENAK+LNAKGELNDENVSSYEKLRKS
Sbjct: 241  ADQKKFFRKAFHTYYDAAAELLQSEHTSLRQMEQENAKLLNAKGELNDENVSSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRNVSSLAEA+DMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
Sbjct: 301  YDHLYRNVSSLAEAVDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ 420
            FYECLPDLRAFVPAVLLGEAEPKAN+QS KPAEN+AESEADQGQQTSLEAVEISTD  L+
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKANEQSAKPAENLAESEADQGQQTSLEAVEISTDSLLE 420

Query: 421  DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG 480
            DGKINEKGKDKEEKDKEK+KDTDKEKGKEKDADRKMENEKEKLKN+EGTNLDALLQRLPG
Sbjct: 421  DGKINEKGKDKEEKDKEKNKDTDKEKGKEKDADRKMENEKEKLKNIEGTNLDALLQRLPG 480

Query: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV 540
            CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSR+VATLSTCMKDVSV
Sbjct: 481  CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRLVATLSTCMKDVSV 540

Query: 541  ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH 600
            ILLQMLEEEFNFLLNKKDQMNIETKI+NIRFIGELCKFKI+SAGLVFSCLK+CLDDFTHH
Sbjct: 541  ILLQMLEEEFNFLLNKKDQMNIETKIKNIRFIGELCKFKIASAGLVFSCLKACLDDFTHH 600

Query: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660
            NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
Sbjct: 601  NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP 660

Query: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720
            ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
Sbjct: 661  ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK 720

Query: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780
            YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
Sbjct: 721  YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN 780

Query: 781  YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK 840
            YELV+SSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRM+ITLLQTCGHYFDRGSSKRK
Sbjct: 781  YELVDSSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMVITLLQTCGHYFDRGSSKRK 840

Query: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900
            LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
Sbjct: 841  LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV 900

Query: 901  SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI 960
            S+  KPNTEKHLDA+K PSR TSNTTSANGRDTVNGS+ENG AAHED  DSDSDTGSGTI
Sbjct: 901  SNV-KPNTEKHLDAKK-PSRATSNTTSANGRDTVNGSKENG-AAHEDGVDSDSDTGSGTI 960

Query: 961  EAEGRDDEESDLENHEDG-DSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQ 1020
            EAEG  DEESDLENHEDG D+EDDEDDEE GGPASDEDDEVHVR KVAEVDPREEANFEQ
Sbjct: 961  EAEGHGDEESDLENHEDGCDTEDDEDDEEAGGPASDEDDEVHVRPKVAEVDPREEANFEQ 1020

Query: 1021 ELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRGVGGESGDEALDE 1080
            ELRAVMQ     ESMDQRRQE+RGRPTLNMMIPMNLFEG+TRDHHGRG GGESGDEAL+E
Sbjct: 1021 ELRAVMQ-----ESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEALEE 1080

Query: 1081 DAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYND 1140
            DAGG+KEVQVKVLVKRGNKQQTKKMYIPRD ALLQSTKQKEA ELEEKQDIKRLILEYND
Sbjct: 1081 DAGGSKEVQVKVLVKRGNKQQTKKMYIPRDSALLQSTKQKEAEELEEKQDIKRLILEYND 1140

Query: 1141 REEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYSRKK 1199
            REEEELNGLGSQTMNWM TG NR PTRGNNW+ASGGRSGG  HPHHRY GGGVHYSRKK
Sbjct: 1141 REEEELNGLGSQTMNWMQTGNNRAPTRGNNWDASGGRSGGSHHPHHRYPGGGVHYSRKK 1191

[Close]

BLAST of MS010041 vs. TAIR 10
Match: AT2G39260.1 (binding;RNA binding )

HSP 1 Score: 1587.0 bits (4108), Expect = 0.0e+00
Identity = 852/1203 (70.82%), Postives = 1015/1203 (84.37%), Query Frame = 0


Query: 1    MDHHEDDGRPGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS 60
            MDH ED+         K+DDEE +AR EEIKKS EAK+ LRQ+NLNPERPDS +LRTLDS
Sbjct: 1    MDHPEDESH-----SEKQDDEEALARLEEIKKSIEAKLTLRQNNLNPERPDSAYLRTLDS 60

Query: 61   SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC 120
            SIKRNT +IKKLKQINEEQREGLMD+LR VN+SKFVSEAV AIC+AKL++SDIQAAVQIC
Sbjct: 61   SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQIC 120

Query: 121  SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED 180
            SLLHQRYK+FS  L QGLLKVFFPGKS ++L+AD+N KAMKKRSTLKLLLEL++VGVIED
Sbjct: 121  SLLHQRYKEFSASLTQGLLKVFFPGKSAEDLEADKNSKAMKKRSTLKLLLELYYVGVIED 180

Query: 181  CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT 240
              IF NIIKDLTS+E L+DRD T TNLTLL SFARQGRI LGLP +GQD E+FFK L++T
Sbjct: 181  SNIFINIIKDLTSVEQLKDRDTTQTNLTLLTSFARQGRIFLGLPISGQD-EDFFKGLDVT 240

Query: 241  ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS 300
            ADQKK F+K F+TYYDA ++LLQSEH  L QME ENAK++NAKGEL++++ SSYEKLRKS
Sbjct: 241  ADQKKSFKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRKS 300

Query: 301  YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA 360
            YDHLYRN+SSLAEALDMQPPVMPEDG TTR++AG++ S     KD+SV E IWDDEDT+ 
Sbjct: 301  YDHLYRNISSLAEALDMQPPVMPEDG-TTRLTAGDEASPSGTVKDTSVPEPIWDDEDTKT 360

Query: 361  FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEAD--QGQQTSLEAVEISTDCS 420
            FYECLPDLRAFVPAVLLGEAEPK+N+QS K  E ++ES ++  + QQT+ +  E+S D +
Sbjct: 361  FYECLPDLRAFVPAVLLGEAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSA 420

Query: 421  LQDGKIN-EKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQR 480
              D + N E+ K+KEE +KEK+KDT KEKGKEKD+++KME+EKEK K+++  N + LLQR
Sbjct: 421  SMDDRSNAEQPKEKEEVEKEKAKDTKKEKGKEKDSEKKMEHEKEKGKSLDVANFERLLQR 480

Query: 481  LPGCVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD 540
            LPGCVSRDLIDQLTVE+CYLNSK NRKKLV+ALFNVPRTSLELL YYSRMVATL++CMKD
Sbjct: 481  LPGCVSRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMVATLASCMKD 540

Query: 541  VSVILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDF 600
            +  +L+QMLE+EFN L++KKDQMNIETKIRNIRFIGELCKFKI  AGLVFSCLK+CLD+F
Sbjct: 541  IPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAGLVFSCLKACLDEF 600

Query: 601  THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC 660
            THHNIDVACNLLETCGRFLYRSPETT+RM NML+ILMRLKNVKNLDPR STLVENAYYLC
Sbjct: 601  THHNIDVACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLC 660

Query: 661  KPPERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVH 720
            KPPERSAR+SKVRPPLHQY+RKLLFSDLDK +I NVL+QLRKLPWSECEQY+LKCFMKVH
Sbjct: 661  KPPERSARISKVRPPLHQYVRKLLFSDLDKDSIANVLKQLRKLPWSECEQYILKCFMKVH 720

Query: 721  KGKYGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGE 780
            KGKYGQIHLIASLTSGLSR+HDEF VAVVDEVLEEIR+GLE+N+YG QQKR+AHMRFLGE
Sbjct: 721  KGKYGQIHLIASLTSGLSRHHDEFVVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGE 780

Query: 781  LYNYELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSS 840
            LYNYE V+SSV+F+TLYL L++GH TSEQ+VLDPPED FR+RM+I LL+TCGHYFDRGSS
Sbjct: 781  LYNYEHVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRVRMVIILLETCGHYFDRGSS 840

Query: 841  KRKLDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHE 900
            K++LD+F IHFQ+YILSKG LPLD+EFDLQDLFA L+PNMTRYS+I+E+NAA ++L+E E
Sbjct: 841  KKRLDQFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYSTIDEVNAAILQLEERE 900

Query: 901  RSVSSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGS 960
             + SS DK + E+H D  K  ++++S+  S+NG+ T    RENG A  E   +SDSD+GS
Sbjct: 901  HA-SSGDKVSIERHSDT-KPSNKSSSDVISSNGKSTAKDIRENGEAHGE---ESDSDSGS 960

Query: 961  GTIEAEGRDDEESDLENHEDGDSEDDEDD-EEGGGPASDEDDEVHVRQKVAEVDPREEAN 1020
            G++  +G+ +EE D  NHE G    D DD ++G GP SD DD+  VRQKV  VD  E+A+
Sbjct: 961  GSVVRDGQ-NEELDDGNHERGSESGDGDDYDDGDGPGSD-DDKFRVRQKVVTVDLEEQAD 1020

Query: 1021 FEQELRAVMQARTIFESMDQRRQEIRGRPTLNMMIPMNLFEGTTRDHHGRG-VGGESGDE 1080
            F+QEL+A++Q     ESM+QR+ E+RGRP LNM IPM++FEG+ +DHH  G V GE+G+E
Sbjct: 1021 FDQELKALLQ-----ESMEQRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVVGENGEE 1080

Query: 1081 ALDEDAGGTKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLIL 1140
             LDE+ G  +EVQVKVLVKRGNKQQT++M IP DCAL+QSTKQKEAAELEEKQDIKRL+L
Sbjct: 1081 VLDEENGEQREVQVKVLVKRGNKQQTRQMLIPSDCALVQSTKQKEAAELEEKQDIKRLVL 1140

Query: 1141 EYNDREEEELNGLGSQTMNWMPTGGNRVPTRGNNWEASGGRSGGPRHPHHRYIGGGVHYS 1199
            EYN+R+EEE NGLG+Q +NW  +GG+R  TR        G+SGG RH  + + GGG  Y 
Sbjct: 1141 EYNERDEEEANGLGTQILNW-TSGGSRGSTRTGE---GSGKSGGSRHRFYYHQGGGGSYH 1180

The following BLAST results are available for this feature:

BLAST of MS010041 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133716.1	0.0e+00	99.17	regulator of nonsense transcripts UPF2 [Momordica charantia]	[more]
KAG6578740.1	0.0e+00	94.91	Regulator of nonsense transcripts UPF2, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_008463566.1	0.0e+00	94.34	PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Cucumis ...	[more]
XP_023550316.1	0.0e+00	94.83	regulator of nonsense transcripts UPF2-like [Cucurbita pepo subsp. pepo]	[more]
XP_004143811.1	0.0e+00	94.43	regulator of nonsense transcripts UPF2 [Cucumis sativus] >KGN51237.1 hypothetica...	[more]

BLAST of MS010041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IUX6	0.0e+00	70.82	Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 P...	[more]
A2AT37	5.4e-178	36.83	Regulator of nonsense transcripts 2 OS=Mus musculus OX=10090 GN=Upf2 PE=1 SV=1	[more]
Q9HAU5	9.2e-178	36.39	Regulator of nonsense transcripts 2 OS=Homo sapiens OX=9606 GN=UPF2 PE=1 SV=1	[more]
O13824	6.3e-70	24.91	Nonsense-mediated mRNA decay protein 2 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
P38798	4.1e-61	23.80	Nonsense-mediated mRNA decay protein 2 OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of MS010041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVY0	0.0e+00	99.17	regulator of nonsense transcripts UPF2 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A1S3CJK4	0.0e+00	94.34	LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 OS=Cucumis melo OX=3...	[more]
A0A0A0KS34	0.0e+00	94.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497020 PE=4 SV=1	[more]
A0A6J1FEV2	0.0e+00	94.66	regulator of nonsense transcripts UPF2-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JX56	0.0e+00	94.66	regulator of nonsense transcripts UPF2-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MS010041 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39260.1	0.0e+00	70.82	binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 543..563
None	No IPR available	COILS	Coil	Coil	coord: 269..289
None	No IPR available	COILS	Coil	Coil	coord: 449..469
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 918..936
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1059..1082
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1058..1082
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 387..421
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1171..1198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 897..917
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 382..463
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 964..994
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 897..1002
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..463
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..344
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1179..1198
None	No IPR available	PANTHER	PTHR12839:SF8	SUBFAMILY NOT NAMED	coord: 1..1194
IPR003890	MIF4G-like, type 3	SMART	SM00543	if4_15	coord: 62..283 e-value: 0.012 score: 24.8 coord: 675..876 e-value: 4.0E-45 score: 165.9 coord: 472..660 e-value: 1.4E-48 score: 177.4
IPR003890	MIF4G-like, type 3	PFAM	PF02854	MIF4G	coord: 475..659 e-value: 1.9E-31 score: 109.4 coord: 677..871 e-value: 4.2E-44 score: 150.7
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 429..668 e-value: 5.9E-39 score: 135.7
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 14..323 e-value: 1.7E-89 score: 302.1
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 670..901 e-value: 7.9E-92 score: 309.0
IPR007193	Up-frameshift suppressor 2, C-terminal	PFAM	PF04050	Upf2	coord: 995..1136 e-value: 1.4E-31 score: 110.1
IPR039762	Nonsense-mediated mRNA decay protein Nmd2/UPF2	PANTHER	PTHR12839	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	coord: 1..1194
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 469..663
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 670..890
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 79..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS010041.1	MS010041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding