MS010000 (gene) Bitter gourd (TR) v1

Overview
NameMS010000
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAcyl carrier protein
Locationscaffold505: 184936 .. 185142 (-)
RNA-Seq ExpressionMS010000
SyntenyMS010000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGATGTGTTCAGGACAGCCGTTCTGCCATGTTCGAGTTCCGGTCCAATTCCTTGCCCTAGCTCGCCGGAAATGCCAACCGCAGCCATGTTCCGATAGATTGCTTCGGCTATTTCCATCACACGATGATCACCTTACGAAGGAGGAGGTCATTGAAAGAGTCCTTGCGGTTATCAAGTGTCATCCCAAAGTGGATCCGTCCAAGGTG

mRNA sequence

GAGATGTGTTCAGGACAGCCGTTCTGCCATGTTCGAGTTCCGGTCCAATTCCTTGCCCTAGCTCGCCGGAAATGCCAACCGCAGCCATGTTCCGATAGATTGCTTCGGCTATTTCCATCACACGATGATCACCTTACGAAGGAGGAGGTCATTGAAAGAGTCCTTGCGGTTATCAAGTGTCATCCCAAAGTGGATCCGTCCAAGGTG

Coding sequence (CDS)

GAGATGTGTTCAGGACAGCCGTTCTGCCATGTTCGAGTTCCGGTCCAATTCCTTGCCCTAGCTCGCCGGAAATGCCAACCGCAGCCATGTTCCGATAGATTGCTTCGGCTATTTCCATCACACGATGATCACCTTACGAAGGAGGAGGTCATTGAAAGAGTCCTTGCGGTTATCAAGTGTCATCCCAAAGTGGATCCGTCCAAGGTG

Protein sequence

EMCSGQPFCHVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV
Homology
BLAST of MS010000 vs. NCBI nr
Match: XP_022146921.1 (acyl carrier protein 1, mitochondrial [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 4.8e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          HVRVPV+ LALA R+CQPQP S  LLRLF SHDDHLTKEEVIERVLAVIKCHPKVDPSKV
Sbjct: 10 HVRVPVRLLALAHRECQPQPFSGVLLRLFSSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69

BLAST of MS010000 vs. NCBI nr
Match: XP_008438272.1 (PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo] >KAA0049107.1 acyl carrier protein 1 [Cucumis melo var. makuwa] >TYK17456.1 acyl carrier protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 6.3e-20
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          H+RVPVQF ALARR+CQP PCS   LRLF SHDDH+TK+EVIERVL+VIKCHPKVDPSKV
Sbjct: 10 HLRVPVQFYALARRECQPTPCSGGSLRLFSSHDDHMTKDEVIERVLSVIKCHPKVDPSKV 69

BLAST of MS010000 vs. NCBI nr
Match: XP_023540926.1 (acyl carrier protein 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 2.4e-19
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          HVRVPV+F ALARR+CQP  CS   LRLF SHDDHLTKEEVIERVL+V+KCHPKVDPSKV
Sbjct: 10 HVRVPVRFFALARRECQPASCSVASLRLFSSHDDHLTKEEVIERVLSVVKCHPKVDPSKV 69

BLAST of MS010000 vs. NCBI nr
Match: XP_022974768.1 (acyl carrier protein 1, mitochondrial-like [Cucurbita maxima] >XP_022975242.1 acyl carrier protein 1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 104.0 bits (258), Expect = 5.3e-19
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          HVRVPV+F ALARR+CQP  CS   LRLF SHDDHL+KEEVIERVL+V+KCHPKVDPSKV
Sbjct: 10 HVRVPVRFFALARRECQPASCSAASLRLFSSHDDHLSKEEVIERVLSVVKCHPKVDPSKV 69

BLAST of MS010000 vs. NCBI nr
Match: XP_011650836.1 (acyl carrier protein 1, mitochondrial [Cucumis sativus] >KGN56676.1 hypothetical protein Csa_009680 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 5.3e-19
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          H+RVPVQF ALARR+CQP  CS   LRLF SHDDHLTK+EVIERVL+VIKCHPKVDPSKV
Sbjct: 10 HLRVPVQFYALARRECQPTLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKCHPKVDPSKV 69

BLAST of MS010000 vs. ExPASy Swiss-Prot
Match: P53665 (Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-08
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          H+RVPVQ L L + K          +R F SHDDHL++E V++RVL V+K  PKVDPSKV
Sbjct: 10 HLRVPVQTLGLNQSKIG----FLGTIRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKV 65

BLAST of MS010000 vs. ExPASy TrEMBL
Match: A0A6J1D0T9 (Acyl carrier protein OS=Momordica charantia OX=3673 GN=LOC111016005 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          HVRVPV+ LALA R+CQPQP S  LLRLF SHDDHLTKEEVIERVLAVIKCHPKVDPSKV
Sbjct: 10 HVRVPVRLLALAHRECQPQPFSGVLLRLFSSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69

BLAST of MS010000 vs. ExPASy TrEMBL
Match: A0A5D3D398 (Acyl carrier protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003200 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-20
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          H+RVPVQF ALARR+CQP PCS   LRLF SHDDH+TK+EVIERVL+VIKCHPKVDPSKV
Sbjct: 10 HLRVPVQFYALARRECQPTPCSGGSLRLFSSHDDHMTKDEVIERVLSVIKCHPKVDPSKV 69

BLAST of MS010000 vs. ExPASy TrEMBL
Match: A0A1S3AW34 (Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103483433 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-20
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          H+RVPVQF ALARR+CQP PCS   LRLF SHDDH+TK+EVIERVL+VIKCHPKVDPSKV
Sbjct: 10 HLRVPVQFYALARRECQPTPCSGGSLRLFSSHDDHMTKDEVIERVLSVIKCHPKVDPSKV 69

BLAST of MS010000 vs. ExPASy TrEMBL
Match: A0A6J1IHA9 (Acyl carrier protein OS=Cucurbita maxima OX=3661 GN=LOC111473491 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          HVRVPV+F ALARR+CQP  CS   LRLF SHDDHL+KEEVIERVL+V+KCHPKVDPSKV
Sbjct: 10 HVRVPVRFFALARRECQPASCSAASLRLFSSHDDHLSKEEVIERVLSVVKCHPKVDPSKV 69

BLAST of MS010000 vs. ExPASy TrEMBL
Match: A0A0A0L986 (Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_3G128860 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          H+RVPVQF ALARR+CQP  CS   LRLF SHDDHLTK+EVIERVL+VIKCHPKVDPSKV
Sbjct: 10 HLRVPVQFYALARRECQPTLCSGGSLRLFSSHDDHLTKDEVIERVLSVIKCHPKVDPSKV 69

BLAST of MS010000 vs. TAIR 10
Match: AT2G44620.1 (mitochondrial acyl carrier protein 1 )

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 10 HVRVPVQFLALARRKCQPQPCSDRLLRLFPSHDDHLTKEEVIERVLAVIKCHPKVDPSKV 69
          H+RVPVQ L L + K          +R F SHDDHL++E V++RVL V+K  PKVDPSKV
Sbjct: 10 HLRVPVQTLGLNQSKIG----FLGTIRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKV 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022146921.14.8e-2086.67acyl carrier protein 1, mitochondrial [Momordica charantia][more]
XP_008438272.16.3e-2081.67PREDICTED: acyl carrier protein 1, mitochondrial-like [Cucumis melo] >KAA0049107... [more]
XP_023540926.12.4e-1981.67acyl carrier protein 1, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022974768.15.3e-1980.00acyl carrier protein 1, mitochondrial-like [Cucurbita maxima] >XP_022975242.1 ac... [more]
XP_011650836.15.3e-1981.67acyl carrier protein 1, mitochondrial [Cucumis sativus] >KGN56676.1 hypothetical... [more]
Match NameE-valueIdentityDescription
P536652.0e-0853.33Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP1 ... [more]
Match NameE-valueIdentityDescription
A0A6J1D0T92.3e-2086.67Acyl carrier protein OS=Momordica charantia OX=3673 GN=LOC111016005 PE=3 SV=1[more]
A0A5D3D3983.0e-2081.67Acyl carrier protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434... [more]
A0A1S3AW343.0e-2081.67Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103483433 PE=3 SV=1[more]
A0A6J1IHA92.6e-1980.00Acyl carrier protein OS=Cucurbita maxima OX=3661 GN=LOC111473491 PE=3 SV=1[more]
A0A0A0L9862.6e-1981.67Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_3G128860 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44620.11.4e-0953.33mitochondrial acyl carrier protein 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS010000.1MS010000.1mRNA