MS009953 (gene) Bitter gourd (TR) v1

Overview
NameMS009953
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionThreonine dehydratase
Locationscaffold943_1: 273271 .. 273411 (-)
RNA-Seq ExpressionMS009953
SyntenyMS009953
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGTTAAGTTTTGTGGGGTGGAGCCAAATGAGGAAAAATCTATGGAGCAAGCATTGTATCGTGACGAGAGAGTGATTGCGAAAGAGATAGAACATTTTGCAGATGGTGTAGCTGTTAAGCAAGCCGGTGAAGAGACTTTT

mRNA sequence

CAGGTTAAGTTTTGTGGGGTGGAGCCAAATGAGGAAAAATCTATGGAGCAAGCATTGTATCGTGACGAGAGAGTGATTGCGAAAGAGATAGAACATTTTGCAGATGGTGTAGCTGTTAAGCAAGCCGGTGAAGAGACTTTT

Coding sequence (CDS)

CAGGTTAAGTTTTGTGGGGTGGAGCCAAATGAGGAAAAATCTATGGAGCAAGCATTGTATCGTGACGAGAGAGTGATTGCGAAAGAGATAGAACATTTTGCAGATGGTGTAGCTGTTAAGCAAGCCGGTGAAGAGACTTTT

Protein sequence

QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF
Homology
BLAST of MS009953 vs. NCBI nr
Match: KAA0025309.1 (threonine dehydratase biosynthetic [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEPN+E SM QALYRDE V   +I HFADGVAV+Q G+ETF
Sbjct: 311 EVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGDETF 357

BLAST of MS009953 vs. NCBI nr
Match: XP_008462515.1 (PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Cucumis melo] >TYK07360.1 threonine dehydratase biosynthetic [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEPN+E SM QALYRDE V   +I HFADGVAV+Q G+ETF
Sbjct: 311 EVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGDETF 357

BLAST of MS009953 vs. NCBI nr
Match: XP_004143290.1 (threonine dehydratase biosynthetic, chloroplastic [Cucumis sativus] >KGN48216.1 hypothetical protein Csa_002755 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 9.3e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEPN+E SM QALYRDE V   +I HFADGVAV+Q G E F
Sbjct: 311 EVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGNENF 357

BLAST of MS009953 vs. NCBI nr
Match: KAG6604380.1 (Threonine dehydratase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 2   VKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           VK  GVEPN++ SM QALYR E V   +I HFADGVAV+Q GEETF
Sbjct: 311 VKVFGVEPNDQNSMAQALYRGEIVNVTDIGHFADGVAVQQVGEETF 356

BLAST of MS009953 vs. NCBI nr
Match: XP_023543427.1 (threonine dehydratase biosynthetic, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 2   VKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           VK  GVEPN++ SM QALYR E V   +I HFADGVAV+Q GEETF
Sbjct: 311 VKVFGVEPNDQNSMAQALYRGEIVNVTDIGHFADGVAVQQVGEETF 356

BLAST of MS009953 vs. ExPASy Swiss-Prot
Match: Q9ZSS6 (Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OMR1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.1e-06
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEP +  +M  +L+  ERVI  ++  FADGVAVK+ GEETF
Sbjct: 286 EVKIIGVEPADANAMALSLHHGERVILDQVGGFADGVAVKEVGEETF 332

BLAST of MS009953 vs. ExPASy Swiss-Prot
Match: Q9AXU4 (Threonine dehydratase OS=Nicotiana attenuata OX=49451 GN=TD PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.2e-06
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 3   KFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           K  GVEP    SM Q+LY  ERV  +++++FADGVAV   GEETF
Sbjct: 296 KIIGVEPFGASSMTQSLYHGERVKLEQVDNFADGVAVALVGEETF 340

BLAST of MS009953 vs. ExPASy Swiss-Prot
Match: O42615 (Threonine dehydratase, mitochondrial OS=Blastobotrys adeninivorans OX=409370 GN=ILV1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.0e-05
Identity = 24/47 (51.06%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           QVK  GVE  +  +M Q+L + ER+   E+  FADG AVK  GEETF
Sbjct: 232 QVKIIGVETYDANAMRQSLQKGERITLSEVGLFADGAAVKILGEETF 278

BLAST of MS009953 vs. ExPASy Swiss-Prot
Match: A0FKE6 (Threonine dehydratase 1 biosynthetic, chloroplastic OS=Solanum lycopersicum OX=4081 GN=TD1 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.4e-04
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 2   VKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +K  GVEP +  ++  +L+  +RV+  ++  FADGVAVK  GEET+
Sbjct: 300 IKIIGVEPLDANALALSLHHGQRVMLDQVGGFADGVAVKVVGEETY 345

BLAST of MS009953 vs. ExPASy TrEMBL
Match: A0A5D3C7Q3 (Threonine dehydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00790 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-08
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEPN+E SM QALYRDE V   +I HFADGVAV+Q G+ETF
Sbjct: 311 EVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGDETF 357

BLAST of MS009953 vs. ExPASy TrEMBL
Match: A0A5A7SJ32 (Threonine dehydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001640 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-08
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEPN+E SM QALYRDE V   +I HFADGVAV+Q G+ETF
Sbjct: 311 EVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGDETF 357

BLAST of MS009953 vs. ExPASy TrEMBL
Match: A0A1S3CH38 (Threonine dehydratase OS=Cucumis melo OX=3656 GN=LOC103500853 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-08
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEPN+E SM QALYRDE V   +I HFADGVAV+Q G+ETF
Sbjct: 311 EVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGDETF 357

BLAST of MS009953 vs. ExPASy TrEMBL
Match: A0A0A0KKC3 (Threonine dehydratase OS=Cucumis sativus OX=3659 GN=Csa_6G448740 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.5e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEPN+E SM QALYRDE V   +I HFADGVAV+Q G E F
Sbjct: 311 EVKVFGVEPNDENSMAQALYRDEIVNVTDIGHFADGVAVQQVGNENF 357

BLAST of MS009953 vs. ExPASy TrEMBL
Match: A0A6J1ECR5 (Threonine dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111433136 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.9e-07
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 2   VKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           VK  GVEPN++ SM QALYR E V   +I HFADGVAV+Q GEETF
Sbjct: 311 VKVFGVEPNDQNSMAQALYRGEIVNVTDIGHFADGVAVQQVGEETF 356

BLAST of MS009953 vs. TAIR 10
Match: AT3G10050.1 (L-O-methylthreonine resistant 1 )

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 1   QVKFCGVEPNEEKSMEQALYRDERVIAKEIEHFADGVAVKQAGEETF 48
           +VK  GVEP +  +M  +L+  ERVI  ++  FADGVAVK+ GEETF
Sbjct: 286 EVKIIGVEPADANAMALSLHHGERVILDQVGGFADGVAVKEVGEETF 332

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025309.11.4e-0768.09threonine dehydratase biosynthetic [Cucumis melo var. makuwa][more]
XP_008462515.11.4e-0768.09PREDICTED: threonine dehydratase biosynthetic, chloroplastic-like [Cucumis melo]... [more]
XP_004143290.19.3e-0765.96threonine dehydratase biosynthetic, chloroplastic [Cucumis sativus] >KGN48216.1 ... [more]
KAG6604380.11.2e-0667.39Threonine dehydratase, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023543427.11.2e-0667.39threonine dehydratase biosynthetic, chloroplastic-like [Cucurbita pepo subsp. pe... [more]
Match NameE-valueIdentityDescription
Q9ZSS62.1e-0653.19Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
Q9AXU46.2e-0655.56Threonine dehydratase OS=Nicotiana attenuata OX=49451 GN=TD PE=1 SV=1[more]
O426154.0e-0551.06Threonine dehydratase, mitochondrial OS=Blastobotrys adeninivorans OX=409370 GN=... [more]
A0FKE63.4e-0443.48Threonine dehydratase 1 biosynthetic, chloroplastic OS=Solanum lycopersicum OX=4... [more]
Match NameE-valueIdentityDescription
A0A5D3C7Q36.9e-0868.09Threonine dehydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20... [more]
A0A5A7SJ326.9e-0868.09Threonine dehydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54... [more]
A0A1S3CH386.9e-0868.09Threonine dehydratase OS=Cucumis melo OX=3656 GN=LOC103500853 PE=3 SV=1[more]
A0A0A0KKC34.5e-0765.96Threonine dehydratase OS=Cucumis sativus OX=3659 GN=Csa_6G448740 PE=3 SV=1[more]
A0A6J1ECR55.9e-0767.39Threonine dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111433136 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G10050.11.5e-0753.19L-O-methylthreonine resistant 1 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036052Tryptophan synthase beta subunit-like PLP-dependent enzymeGENE3D3.40.50.1100coord: 1..47
e-value: 6.3E-6
score: 28.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009953.1MS009953.1mRNA