MS009862 (gene) Bitter gourd (TR) v1

Overview


Name	MS009862
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	scaffold173: 916883 .. 916981 (+)
RNA-Seq Expression	MS009862
Synteny	MS009862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAACTCATTGTATGGGAAATACTTCAGGAAGTTATGGAGGGTTATCTCGTATTGCTAAATAAAGCGTATACTCTACATAGATTAGGCATCCAAGCG

mRNA sequence

AAAAAACTCATTGTATGGGAAATACTTCAGGAAGTTATGGAGGGTTATCTCGTATTGCTAAATAAAGCGTATACTCTACATAGATTAGGCATCCAAGCG

Coding sequence (CDS)

AAAAAACTCATTGTATGGGAAATACTTCAGGAAGTTATGGAGGGTTATCTCGTATTGCTAAATAAAGCGTATACTCTACATAGATTAGGCATCCAAGCG

Protein sequence

KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA

Homology

[Close]

BLAST of MS009862 vs. NCBI nr
Match: AWH98273.1 (RNA polymerase beta subunit, partial [Odontadenia sp. ITV658])

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-05
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1  KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
          KKLIVWEILQEVMEG+ VLLN+A TLHRLGIQA
Sbjct: 66 KKLIVWEILQEVMEGHPVLLNRAPTLHRLGIQA 98

[Close]

BLAST of MS009862 vs. NCBI nr
Match: AWI72718.1 (RNA polymerase beta' subunit [Metastelma northropiae])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVMEG+ VLLN+A TLHRLGIQA
Sbjct: 440 KKTIVWEILQEVMEGHPVLLNRAPTLHRLGIQA 472

[Close]

BLAST of MS009862 vs. NCBI nr
Match: YP_010116599.1 (RNA polymerase beta' subunit [Cakile maritima subsp. baltica] >QJF66939.1 RNA polymerase beta' subunit [Cakile maritima subsp. baltica])

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KKLIVWEILQEVM+G+ VLLN+A TLHRLGIQ+
Sbjct: 433 KKLIVWEILQEVMQGHPVLLNRAPTLHRLGIQS 465

[Close]

BLAST of MS009862 vs. NCBI nr
Match: YP_009353220.1 (RNA polymerase beta [Passiflora edulis] >APL97541.1 RNA polymerase beta [Passiflora edulis])

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           K+ IVWEILQEVMEGY VLLN+A TLHRLGIQA
Sbjct: 441 KEPIVWEILQEVMEGYPVLLNRAPTLHRLGIQA 473

[Close]

BLAST of MS009862 vs. NCBI nr
Match: ABU79845.1 (RNA polymerase C, partial [Adiantum venustum] >ABU79906.1 RNA polymerase C, partial [Passiflora incarnata])

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           K+ IVWEILQEVMEGY VLLN+A TLHRLGIQA
Sbjct: 96  KEPIVWEILQEVMEGYPVLLNRAPTLHRLGIQA 128

[Close]

BLAST of MS009862 vs. ExPASy Swiss-Prot
Match: P56763 (DNA-directed RNA polymerase subunit beta' OS=Arabidopsis thaliana OX=3702 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.8e-07
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVM+G+ VLLN+A TLHRLGIQ+
Sbjct: 433 KKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQS 465

[Close]

BLAST of MS009862 vs. ExPASy Swiss-Prot
Match: A4QK96 (DNA-directed RNA polymerase subunit beta' OS=Barbarea verna OX=50458 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.8e-07
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVM+G+ VLLN+A TLHRLGIQ+
Sbjct: 433 KKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQS 465

[Close]

BLAST of MS009862 vs. ExPASy Swiss-Prot
Match: A4QKI3 (DNA-directed RNA polymerase subunit beta' OS=Capsella bursa-pastoris OX=3719 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.8e-07
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVM+G+ VLLN+A TLHRLGIQ+
Sbjct: 433 KKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQS 465

[Close]

BLAST of MS009862 vs. ExPASy Swiss-Prot
Match: A4QKS2 (DNA-directed RNA polymerase subunit beta' OS=Crucihimalaya wallichii OX=78192 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.8e-07
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVM+G+ VLLN+A TLHRLGIQ+
Sbjct: 433 KKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQS 465

[Close]

BLAST of MS009862 vs. ExPASy Swiss-Prot
Match: A4QL10 (DNA-directed RNA polymerase subunit beta' OS=Draba nemorosa OX=171822 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.8e-07
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVM+G+ VLLN+A TLHRLGIQ+
Sbjct: 433 KKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQS 465

[Close]

BLAST of MS009862 vs. ExPASy TrEMBL
Match: A0A2S1RF10 (DNA-directed RNA polymerase (Fragment) OS=Odontadenia sp. ITV658 OX=2182527 GN=rpoc1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-05
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1  KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
          KKLIVWEILQEVMEG+ VLLN+A TLHRLGIQA
Sbjct: 66 KKLIVWEILQEVMEGHPVLLNRAPTLHRLGIQA 98

[Close]

BLAST of MS009862 vs. ExPASy TrEMBL
Match: A0A2S1UCK5 (DNA-directed RNA polymerase subunit beta' OS=Metastelma northropiae OX=1254457 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVMEG+ VLLN+A TLHRLGIQA
Sbjct: 440 KKTIVWEILQEVMEGHPVLLNRAPTLHRLGIQA 472

[Close]

BLAST of MS009862 vs. ExPASy TrEMBL
Match: A0A2Z5D582 (DNA-directed RNA polymerase subunit beta' OS=Passiflora edulis OX=78168 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           K+ IVWEILQEVMEGY VLLN+A TLHRLGIQA
Sbjct: 433 KEPIVWEILQEVMEGYPVLLNRAPTLHRLGIQA 465

[Close]

BLAST of MS009862 vs. ExPASy TrEMBL
Match: A0A7M1CF63 (DNA-directed RNA polymerase subunit beta' OS=Passiflora caerulea OX=159428 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           K+ IVWEILQEVMEGY VLLN+A TLHRLGIQA
Sbjct: 433 KEPIVWEILQEVMEGYPVLLNRAPTLHRLGIQA 465

[Close]

BLAST of MS009862 vs. ExPASy TrEMBL
Match: A7XWS1 (DNA-directed RNA polymerase (Fragment) OS=Adiantum venustum OX=446141 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           K+ IVWEILQEVMEGY VLLN+A TLHRLGIQA
Sbjct: 96  KEPIVWEILQEVMEGYPVLLNRAPTLHRLGIQA 128

[Close]

BLAST of MS009862 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 52.8 bits (125), Expect = 6.3e-08
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1   KKLIVWEILQEVMEGYLVLLNKAYTLHRLGIQA 34
           KK IVWEILQEVM+G+ VLLN+A TLHRLGIQ+
Sbjct: 433 KKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQS 465

The following BLAST results are available for this feature:

BLAST of MS009862 vs. NCBI nr


Match Name	E-value	Identity	Description
AWH98273.1	2.1e-05	87.88	RNA polymerase beta subunit, partial [Odontadenia sp. ITV658]	[more]
AWI72718.1	8.0e-05	84.85	RNA polymerase beta' subunit [Metastelma northropiae]	[more]
YP_010116599.1	1.0e-04	81.82	RNA polymerase beta' subunit [Cakile maritima subsp. baltica] >QJF66939.1 RNA po...	[more]
YP_009353220.1	1.0e-04	84.85	RNA polymerase beta [Passiflora edulis] >APL97541.1 RNA polymerase beta [Passifl...	[more]
ABU79845.1	1.0e-04	84.85	RNA polymerase C, partial [Adiantum venustum] >ABU79906.1 RNA polymerase C, part...	[more]

BLAST of MS009862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56763	8.8e-07	78.79	DNA-directed RNA polymerase subunit beta' OS=Arabidopsis thaliana OX=3702 GN=rpo...	[more]
A4QK96	8.8e-07	78.79	DNA-directed RNA polymerase subunit beta' OS=Barbarea verna OX=50458 GN=rpoC1 PE...	[more]
A4QKI3	8.8e-07	78.79	DNA-directed RNA polymerase subunit beta' OS=Capsella bursa-pastoris OX=3719 GN=...	[more]
A4QKS2	8.8e-07	78.79	DNA-directed RNA polymerase subunit beta' OS=Crucihimalaya wallichii OX=78192 GN...	[more]
A4QL10	8.8e-07	78.79	DNA-directed RNA polymerase subunit beta' OS=Draba nemorosa OX=171822 GN=rpoC1 P...	[more]

BLAST of MS009862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2S1RF10	1.0e-05	87.88	DNA-directed RNA polymerase (Fragment) OS=Odontadenia sp. ITV658 OX=2182527 GN=r...	[more]
A0A2S1UCK5	3.9e-05	84.85	DNA-directed RNA polymerase subunit beta' OS=Metastelma northropiae OX=1254457 G...	[more]
A0A2Z5D582	5.0e-05	84.85	DNA-directed RNA polymerase subunit beta' OS=Passiflora edulis OX=78168 GN=rpoC1...	[more]
A0A7M1CF63	5.0e-05	84.85	DNA-directed RNA polymerase subunit beta' OS=Passiflora caerulea OX=159428 GN=rp...	[more]
A7XWS1	5.0e-05	84.85	DNA-directed RNA polymerase (Fragment) OS=Adiantum venustum OX=446141 GN=rpoC1 P...	[more]

BLAST of MS009862 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	6.3e-08	78.79	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 3..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009862.1	MS009862.1	mRNA