MS009853 (gene) Bitter gourd (TR) v1

Overview
NameMS009853
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionL-galactono-1,4-lactone dehydrogenase
Locationscaffold173: 824540 .. 824665 (-)
RNA-Seq ExpressionMS009853
SyntenyMS009853
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCAAGCAAGACTCATGAAATGGTTTTCTGTCAATGAACTCGTCAGGGCACGACGAGTATTGGATCCAGACAAAATTCTTTCAAATAACAAGTTAGAAAAGCCATTCTCGCCATGGAATGTGGTT

mRNA sequence

GTTCAAGCAAGACTCATGAAATGGTTTTCTGTCAATGAACTCGTCAGGGCACGACGAGTATTGGATCCAGACAAAATTCTTTCAAATAACAAGTTAGAAAAGCCATTCTCGCCATGGAATGTGGTT

Coding sequence (CDS)

GTTCAAGCAAGACTCATGAAATGGTTTTCTGTCAATGAACTCGTCAGGGCACGACGAGTATTGGATCCAGACAAAATTCTTTCAAATAACAAGTTAGAAAAGCCATTCTCGCCATGGAATGTGGTT

Protein sequence

VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPFSPWNVV
Homology
BLAST of MS009853 vs. NCBI nr
Match: NP_001292704.1 (L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis sativus] >ADT80722.1 L-galactono-1,4-lactone dehydrogenase [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 8.6e-04
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 1   VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPFSPWNVV 43
           +QARL K F V+E  +ARR LDP+KILSNNKLEK FS  + V
Sbjct: 549 LQARLRKRFPVDEYNKARRALDPNKILSNNKLEKLFSSTDTV 590

BLAST of MS009853 vs. NCBI nr
Match: NP_001284400.1 (L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis melo] >AAF64319.2 L-galactono-1,4-lactone dehydrogenase [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 8.6e-04
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 1   VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPFSPWNVV 43
           +QARL K F V+E  +ARR LDP+KILSNNKLEK FS  ++V
Sbjct: 548 LQARLRKRFPVDESNKARRALDPNKILSNNKLEKLFSSLDMV 589

BLAST of MS009853 vs. NCBI nr
Match: KAE8637410.1 (hypothetical protein CSA_023387 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 8.6e-04
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 1   VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPFSPWNVV 43
           +QARL K F V+E  +ARR LDP+KILSNNKLEK FS  + V
Sbjct: 781 LQARLRKRFPVDEYNKARRALDPNKILSNNKLEKLFSSTDTV 822

BLAST of MS009853 vs. ExPASy TrEMBL
Match: Q9M4U9 (L-galactono-1,4-lactone dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103497260 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-04
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 1   VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPFSPWNVV 43
           +QARL K F V+E  +ARR LDP+KILSNNKLEK FS  ++V
Sbjct: 548 LQARLRKRFPVDESNKARRALDPNKILSNNKLEKLFSSLDMV 589

BLAST of MS009853 vs. ExPASy TrEMBL
Match: A0A0A0KYT8 (ALO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G236360 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-04
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 1   VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPFSPWNVV 43
           +QARL K F V+E  +ARR LDP+KILSNNKLEK FS  + V
Sbjct: 316 LQARLRKRFPVDEYNKARRALDPNKILSNNKLEKLFSSTDTV 357

BLAST of MS009853 vs. ExPASy TrEMBL
Match: E7E016 (L-galactono-1,4-lactone dehydrogenase OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-04
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0

Query: 1   VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPFSPWNVV 43
           +QARL K F V+E  +ARR LDP+KILSNNKLEK FS  + V
Sbjct: 549 LQARLRKRFPVDEYNKARRALDPNKILSNNKLEKLFSSTDTV 590

BLAST of MS009853 vs. TAIR 10
Match: AT3G47930.1 (L-galactono-1,4-lactone dehydrogenase )

HSP 1 Score: 41.2 bits (95), Expect = 2.4e-04
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 0

Query: 1   VQARLMKWFSVNELVRARRVLDPDKILSNNKLEKPF 37
           +QAR+ K F V+   +ARR LDP++ILSNN +EK F
Sbjct: 569 LQARIRKRFPVDAYNKARRELDPNRILSNNMVEKLF 604

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NP_001292704.18.6e-0464.29L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis sativus] >ADT80722... [more]
NP_001284400.18.6e-0464.29L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis melo] >AAF64319.2 ... [more]
KAE8637410.18.6e-0464.29hypothetical protein CSA_023387 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Q9M4U94.2e-0464.29L-galactono-1,4-lactone dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103497260 PE... [more]
A0A0A0KYT84.2e-0464.29ALO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G236360 PE=4 SV... [more]
E7E0164.2e-0464.29L-galactono-1,4-lactone dehydrogenase OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G47930.12.4e-0455.56L-galactono-1,4-lactone dehydrogenase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009853.1MS009853.1mRNA