MS009849 (gene) Bitter gourd (TR) v1

Overview


Name	MS009849
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger protein 6
Location	scaffold173: 794802 .. 795227 (+)
RNA-Seq Expression	MS009849
Synteny	MS009849

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCCAGCCATTTACGACTTCCTGAGCCAAACAACAACGGATCCAAAACCTTCGAGAAAGTCCCAATCCCAATACTCTTCGTCTCGCATTTTCCCATGCCTTTATTGCCCTCGCAAATTCTACACTTCCCAAGCACTAGGCGGCCACCAGAACGCCCACAAGCGCGAGAGAGCCGCCTCTCGCAAGCCCTTCCACTCCGATCTCCTCCATTTCCCTCCCCACCATATCCTCAACTCGCCGCCGCCGCCGCCGCCGTCGGCCTCGCCGGCCATGGCGGCTTCTTTTCTCGACGAGCATTGGCAGCTCGGCCACCAGAACCACCACCGCGCCGCCCTCTCCTCCGCCTCGACGCCGGAAGACGCTCTCTCCCCCAACGCCGACGCCGTTGAAAACGTCACCATCGATCTCACTCTTCGCCTA

mRNA sequence

ATGGCGGACCCAGCCATTTACGACTTCCTGAGCCAAACAACAACGGATCCAAAACCTTCGAGAAAGTCCCAATCCCAATACTCTTCGTCTCGCATTTTCCCATGCCTTTATTGCCCTCGCAAATTCTACACTTCCCAAGCACTAGGCGGCCACCAGAACGCCCACAAGCGCGAGAGAGCCGCCTCTCGCAAGCCCTTCCACTCCGATCTCCTCCATTTCCCTCCCCACCATATCCTCAACTCGCCGCCGCCGCCGCCGCCGTCGGCCTCGCCGGCCATGGCGGCTTCTTTTCTCGACGAGCATTGGCAGCTCGGCCACCAGAACCACCACCGCGCCGCCCTCTCCTCCGCCTCGACGCCGGAAGACGCTCTCTCCCCCAACGCCGACGCCGTTGAAAACGTCACCATCGATCTCACTCTTCGCCTA

Coding sequence (CDS)

ATGGCGGACCCAGCCATTTACGACTTCCTGAGCCAAACAACAACGGATCCAAAACCTTCGAGAAAGTCCCAATCCCAATACTCTTCGTCTCGCATTTTCCCATGCCTTTATTGCCCTCGCAAATTCTACACTTCCCAAGCACTAGGCGGCCACCAGAACGCCCACAAGCGCGAGAGAGCCGCCTCTCGCAAGCCCTTCCACTCCGATCTCCTCCATTTCCCTCCCCACCATATCCTCAACTCGCCGCCGCCGCCGCCGCCGTCGGCCTCGCCGGCCATGGCGGCTTCTTTTCTCGACGAGCATTGGCAGCTCGGCCACCAGAACCACCACCGCGCCGCCCTCTCCTCCGCCTCGACGCCGGAAGACGCTCTCTCCCCCAACGCCGACGCCGTTGAAAACGTCACCATCGATCTCACTCTTCGCCTA

Protein sequence

MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHHRAALSSASTPEDALSPNADAVENVTIDLTLRL

Homology

[Close]

BLAST of MS009849 vs. NCBI nr
Match: XP_022156503.1 (zinc finger protein 6 [Momordica charantia])

HSP 1 Score: 292.0 bits (746), Expect = 2.8e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERA 60
           MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERA
Sbjct: 1   MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERA 60

Query: 61  ASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHHRAALSSASTP 120
           ASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHHRAALSSASTP
Sbjct: 61  ASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHHRAALSSASTP 120

Query: 121 EDALSPNADAVENVTIDLTLRL 143
           EDALSPNADAVENVTIDLTLRL
Sbjct: 121 EDALSPNADAVENVTIDLTLRL 142

[Close]

BLAST of MS009849 vs. NCBI nr
Match: XP_022934585.1 (protein LATE FLOWERING-like [Cucurbita moschata])

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-39
Identity = 108/168 (64.29%), Postives = 118/168 (70.24%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT     PK SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLHF-------PP-----HHILNSP----PPPPPSASPAMAASFLDE 120
           RERAASRK F S++LH        PP     HH L  P    P P P+ +PA  A FL +
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPTTTTTHHHLPQPYTVAPSPTPTPTPA-PADFLGQ 120

Query: 121 HWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
           HW   +QNH+ A     A +SAS   DALSPNAD AVE+VTIDLTLRL
Sbjct: 121 HW--FNQNHYSANTTTTASASASASPDALSPNADTAVEHVTIDLTLRL 165

[Close]

BLAST of MS009849 vs. NCBI nr
Match: XP_022928226.1 (protein LATE FLOWERING-like [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 9.5e-39
Identity = 99/155 (63.87%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLHFPPHHILNSPPPPP--------PSASPAMAASFLDEHWQLGHQN 120
           RERAASRK F S++LH         PPPPP        PS +    ++  DEHW     N
Sbjct: 61  RERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPSTTALAPSALFDEHW-FHQNN 120

Query: 121 HHRAALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
           H+R   ++AS   + LSPNAD AVE+VTIDLTLRL
Sbjct: 121 HYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL 154

[Close]

BLAST of MS009849 vs. NCBI nr
Match: KAG7022634.1 (Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-38
Identity = 105/163 (64.42%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLHFPPHHILNSPPPPPPS-----ASPAMAA----SFLDEHWQLGHQ 120
           RERAASRK F S++LH         PPPPPP+     ASP+  A    +  DEHW   HQ
Sbjct: 61  RERAASRKAFTSEILHLGSLQHSRPPPPPPPTTYHHLASPSTTALAPSALFDEHW--FHQ 120

Query: 121 NHH-------RAALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
           N+H        +A +SAS   + LSPNAD AVE+VTIDLTLRL
Sbjct: 121 NNHYRGTTTTASASASASASPNDLSPNADAAVEHVTIDLTLRL 161

[Close]

BLAST of MS009849 vs. NCBI nr
Match: XP_022989523.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-38
Identity = 102/158 (64.56%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLHFPPHHILNSPPPPP--------PSASPAMAASFLDEHWQLGHQN 120
           RERAASRK F S++LH         PPPPP        PSA+    ++  DEHW   HQN
Sbjct: 61  RERAASRKVFTSEILHLGSLQHSRPPPPPPTTYHHLASPSATALAPSALFDEHW--FHQN 120

Query: 121 HH---RAALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
           +H       +SAS   + LSPNAD AVE+VTIDLTLRL
Sbjct: 121 NHYRGTTTTASASASPNDLSPNADAAVEHVTIDLTLRL 156

[Close]

BLAST of MS009849 vs. ExPASy Swiss-Prot
Match: Q9FFX4 (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-12
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 14 TTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 65
          ++  + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+
Sbjct: 19 SSSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of MS009849 vs. ExPASy Swiss-Prot
Match: Q9FKA9 (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 18 KPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKP-------FHSDL 77
          K + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+         ++D 
Sbjct: 20 KEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNNDF 79

Query: 78 LHFPPHHILNSP 83
          LH  P   L+SP
Sbjct: 80 LHTLP-VFLSSP 90

[Close]

BLAST of MS009849 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 10  LSQTTTDPKPSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHS 69
           LS T+    P ++ Q Q S S R+F C YC RKFY+SQALGGHQNAHKRER  +++    
Sbjct: 61  LSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

Query: 70  DL 71
            L
Sbjct: 121 GL 122

[Close]

BLAST of MS009849 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 10  LSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSD 69
           L+ T  D   S K +   ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++  H  
Sbjct: 39  LNDTFNDDTKSTKCE---ANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMG 98

Query: 70  LLHFPPHH 78
            + F  HH
Sbjct: 99  RM-FGHHH 102

[Close]

BLAST of MS009849 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 6  IYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 65
          + D    +++     +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Sbjct: 41 LIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99

[Close]

BLAST of MS009849 vs. ExPASy TrEMBL
Match: A0A6J1DQT0 (zinc finger protein 6 OS=Momordica charantia OX=3673 GN=LOC111023386 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERA 60
           MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERA
Sbjct: 1   MADPAIYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERA 60

Query: 61  ASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHHRAALSSASTP 120
           ASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHHRAALSSASTP
Sbjct: 61  ASRKPFHSDLLHFPPHHILNSPPPPPPSASPAMAASFLDEHWQLGHQNHHRAALSSASTP 120

Query: 121 EDALSPNADAVENVTIDLTLRL 143
           EDALSPNADAVENVTIDLTLRL
Sbjct: 121 EDALSPNADAVENVTIDLTLRL 142

[Close]

BLAST of MS009849 vs. ExPASy TrEMBL
Match: A0A6J1F843 (protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111441721 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.7e-39
Identity = 108/168 (64.29%), Postives = 118/168 (70.24%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT     PK SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLHF-------PP-----HHILNSP----PPPPPSASPAMAASFLDE 120
           RERAASRK F S++LH        PP     HH L  P    P P P+ +PA  A FL +
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPTTTTTHHHLPQPYTVAPSPTPTPTPA-PADFLGQ 120

Query: 121 HWQLGHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
           HW   +QNH+ A     A +SAS   DALSPNAD AVE+VTIDLTLRL
Sbjct: 121 HW--FNQNHYSANTTTTASASASASPDALSPNADTAVEHVTIDLTLRL 165

[Close]

BLAST of MS009849 vs. ExPASy TrEMBL
Match: A0A6J1EJQ6 (protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111435120 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.6e-39
Identity = 99/155 (63.87%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLHFPPHHILNSPPPPP--------PSASPAMAASFLDEHWQLGHQN 120
           RERAASRK F S++LH         PPPPP        PS +    ++  DEHW     N
Sbjct: 61  RERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPSTTALAPSALFDEHW-FHQNN 120

Query: 121 HHRAALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
           H+R   ++AS   + LSPNAD AVE+VTIDLTLRL
Sbjct: 121 HYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL 154

[Close]

BLAST of MS009849 vs. ExPASy TrEMBL
Match: A0A6J1JQI7 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111486586 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 102/158 (64.56%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTD---PK-PSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFLSQTT     PK  SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLHFPPHHILNSPPPPP--------PSASPAMAASFLDEHWQLGHQN 120
           RERAASRK F S++LH         PPPPP        PSA+    ++  DEHW   HQN
Sbjct: 61  RERAASRKVFTSEILHLGSLQHSRPPPPPPTTYHHLASPSATALAPSALFDEHW--FHQN 120

Query: 121 HH---RAALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
           +H       +SAS   + LSPNAD AVE+VTIDLTLRL
Sbjct: 121 NHYRGTTTTASASASPNDLSPNADAAVEHVTIDLTLRL 156

[Close]

BLAST of MS009849 vs. ExPASy TrEMBL
Match: A0A6J1J5R2 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111481997 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.9e-38
Identity = 104/164 (63.41%), Postives = 114/164 (69.51%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTT----DPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT     PK SRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKPFHSDLLH---FPP--------HHILNSPPPPPPSASPAMA-ASFLDEHWQL 120
           RERAASRK F S++LH    PP        HH L  P    P+ +P  A A FL +HW  
Sbjct: 61  RERAASRKAFASEILHLGSLPPQPTTTTMTHHHLPQPYTVAPAPTPTPAPADFLGQHW-- 120

Query: 121 GHQNHHRA-----ALSSASTPEDALSPNAD-AVENVTIDLTLRL 143
            +QNH+ A       +SAS   DALSPN D AVE+VTIDLTLRL
Sbjct: 121 FNQNHYSANTTTTTTASASASPDALSPNVDTAVEHVTIDLTLRL 162

[Close]

BLAST of MS009849 vs. TAIR 10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 14 TTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 65
          ++  + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRERAA+R+
Sbjct: 19 SSSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of MS009849 vs. TAIR 10
Match: AT5G48890.1 (C2H2-like zinc finger protein )

HSP 1 Score: 67.8 bits (164), Expect = 8.1e-12
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 18 KPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKP-------FHSDL 77
          K + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+         ++D 
Sbjct: 20 KEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNNDF 79

Query: 78 LHFPPHHILNSP 83
          LH  P   L+SP
Sbjct: 80 LHTLP-VFLSSP 90

[Close]

BLAST of MS009849 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 10  LSQTTTDPKPSRKSQSQYS-SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHS 69
           LS T+    P ++ Q Q S S R+F C YC RKFY+SQALGGHQNAHKRER  +++    
Sbjct: 61  LSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

Query: 70  DL 71
            L
Sbjct: 121 GL 122

[Close]

BLAST of MS009849 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 10  LSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKPFHSD 69
           L+ T  D   S K +   ++ R+F C YC RKFY+SQALGGHQNAHKRER  +++  H  
Sbjct: 39  LNDTFNDDTKSTKCE---ANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMG 98

Query: 70  LLHFPPHH 78
            + F  HH
Sbjct: 99  RM-FGHHH 102

[Close]

BLAST of MS009849 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-10
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 6  IYDFLSQTTTDPKPSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 65
          + D    +++     +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Sbjct: 41 LIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99

The following BLAST results are available for this feature:

BLAST of MS009849 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156503.1	2.8e-75	100.00	zinc finger protein 6 [Momordica charantia]	[more]
XP_022934585.1	5.6e-39	64.29	protein LATE FLOWERING-like [Cucurbita moschata]	[more]
XP_022928226.1	9.5e-39	63.87	protein LATE FLOWERING-like [Cucurbita moschata]	[more]
KAG7022634.1	1.2e-38	64.42	Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022989523.1	2.8e-38	64.56	protein LATE FLOWERING-like [Cucurbita maxima]	[more]

BLAST of MS009849 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFX4	2.7e-12	64.71	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1	[more]
Q9FKA9	1.1e-10	51.39	Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1	[more]
Q39263	1.9e-10	53.23	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q39266	2.2e-09	48.53	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]
Q42485	4.8e-09	45.76	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]

BLAST of MS009849 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQT0	1.4e-75	100.00	zinc finger protein 6 OS=Momordica charantia OX=3673 GN=LOC111023386 PE=4 SV=1	[more]
A0A6J1F843	2.7e-39	64.29	protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111441721 PE=4 S...	[more]
A0A6J1EJQ6	4.6e-39	63.87	protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111435120 PE=4 S...	[more]
A0A6J1JQI7	1.3e-38	64.56	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111486586 PE=4 SV=...	[more]
A0A6J1J5R2	3.9e-38	63.41	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111481997 PE=4 SV=...	[more]

BLAST of MS009849 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14010.1	1.9e-13	64.71	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G48890.1	8.1e-12	51.39	C2H2-like zinc finger protein	[more]
AT1G66140.1	1.4e-11	53.23	zinc finger protein 4	[more]
AT1G24625.1	1.5e-10	48.53	zinc finger protein 7	[more]
AT1G80730.1	3.4e-10	45.76	zinc-finger protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 12..72 e-value: 2.3E-5 score: 26.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..91
None	No IPR available	PANTHER	PTHR45730:SF50	OS12G0617001-LIKE PROTEIN	coord: 10..109
None	No IPR available	PANTHER	PTHR45730	ZINC FINGER PROTEIN JAGGED	coord: 10..109
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 35..55
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 33..60 score: 10.595541
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 30..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009849.1	MS009849.1	mRNA