MS009794 (gene) Bitter gourd (TR) v1

Overview


Name	MS009794
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	54S ribosomal protein L37, mitochondrial-like
Location	scaffold173: 337984 .. 338376 (+)
RNA-Seq Expression	MS009794
Synteny	MS009794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGAGCCAAACTAGATTATTTAGAAGCATTATCAATGCCAAAGATGCAATCAAAGTGACGTCTGTGAGAACATTTGCTGCTGGAGGTAAAAAGAAGGGCTCTAAAGGCGGTGCGGCTGCTGATGGTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTTCCACTGTTGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAATGTTATGGCAGACTCGGAGTACCCCGATTGGCTGTGGCGTTTGATCGATAAACATCCAGCTCTGAGTGAATTACGCAGGAAGAATGTCGAAGCCCTTCCCTACGAGGATCTGAAACGATTCGTTAAACTGGATAATCGAGCAAGTATTAAGGAAAACAACTCTATTAAGGCCAAGAAT

mRNA sequence

ATGGCTATGAGCCAAACTAGATTATTTAGAAGCATTATCAATGCCAAAGATGCAATCAAAGTGACGTCTGTGAGAACATTTGCTGCTGGAGGTAAAAAGAAGGGCTCTAAAGGCGGTGCGGCTGCTGATGGTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTTCCACTGTTGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAATGTTATGGCAGACTCGGAGTACCCCGATTGGCTGTGGCGTTTGATCGATAAACATCCAGCTCTGAGTGAATTACGCAGGAAGAATGTCGAAGCCCTTCCCTACGAGGATCTGAAACGATTCGTTAAACTGGATAATCGAGCAAGTATTAAGGAAAACAACTCTATTAAGGCCAAGAAT

Coding sequence (CDS)

ATGGCTATGAGCCAAACTAGATTATTTAGAAGCATTATCAATGCCAAAGATGCAATCAAAGTGACGTCTGTGAGAACATTTGCTGCTGGAGGTAAAAAGAAGGGCTCTAAAGGCGGTGCGGCTGCTGATGGTCCTAAAGCATCAATTCTAAGTAAAGAGGTCAAGTCTTCCACTGTTGTTGGTGCCAATATTCTCAAGGAAGGTGCAGATCCAAATGTTATGGCAGACTCGGAGTACCCCGATTGGCTGTGGCGTTTGATCGATAAACATCCAGCTCTGAGTGAATTACGCAGGAAGAATGTCGAAGCCCTTCCCTACGAGGATCTGAAACGATTCGTTAAACTGGATAATCGAGCAAGTATTAAGGAAAACAACTCTATTAAGGCCAAGAAT

Protein sequence

MAMSQTRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVVGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRASIKENNSIKAKN

Homology

[Close]

BLAST of MS009794 vs. NCBI nr
Match: XP_022154133.1 (54S ribosomal protein L37, mitochondrial-like [Momordica charantia])

HSP 1 Score: 246.9 bits (629), Expect = 9.7e-62
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MAMSQTRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAMSQ+RLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV
Sbjct: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60

Query: 61  GANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADP VMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS
Sbjct: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120

Query: 121 IKENNSIKAKN 132
           IKENNSIKAKN
Sbjct: 121 IKENNSIKAKN 131

[Close]

BLAST of MS009794 vs. NCBI nr
Match: XP_022989738.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 112/132 (84.85%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MAMSQTRLF-RSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTV 60
           MAMSQ RLF RS++N KD IK+T+VRTFAAGGKKKGSKGGAA D PKASILSKEVKS+TV
Sbjct: 1   MAMSQIRLFRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGAATDAPKASILSKEVKSTTV 60

Query: 61  VGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRA 120
           VGANILKEGADP VMADSEYPDWLWRLIDK PALSELRRK+ + LPYEDLKRFVKLD RA
Sbjct: 61  VGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRA 120

Query: 121 SIKENNSIKAKN 132
            IKENNS KAKN
Sbjct: 121 RIKENNSSKAKN 132

[Close]

BLAST of MS009794 vs. NCBI nr
Match: XP_038883607.1 (54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_038883608.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 3.2e-49
Identity = 110/133 (82.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MAMSQTRLF-RSIINAKDAIKVTSVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSST 60
           M MSQ RLF RSI+N+KD I++TSVRTFAAGGK KKGSKGGAAAD PKAS LSKEVKS+T
Sbjct: 1   MVMSQIRLFRRSIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKSTT 60

Query: 61  VVGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADP +MADSEYP WLW L+DKHP LSELRRKNVE LPY DLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDTR 120

Query: 121 ASIKENNSIKAKN 132
           A IKENNS KAKN
Sbjct: 121 AKIKENNSTKAKN 133

[Close]

BLAST of MS009794 vs. NCBI nr
Match: XP_038883606.1 (39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 3.2e-49
Identity = 110/133 (82.71%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 1   MAMSQTRLF-RSIINAKDAIKVTSVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSST 60
           M MSQ RLF RSI+N+KD I++TSVRTFAAGGK KKGSKGGAAAD PKAS LSKEVKS+T
Sbjct: 9   MVMSQIRLFRRSIVNSKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASTLSKEVKSTT 68

Query: 61  VVGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADP +MADSEYP WLW L+DKHP LSELRRKNVE LPY DLKRFVKLD R
Sbjct: 69  VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVETLPYVDLKRFVKLDTR 128

Query: 121 ASIKENNSIKAKN 132
           A IKENNS KAKN
Sbjct: 129 AKIKENNSTKAKN 141

[Close]

BLAST of MS009794 vs. NCBI nr
Match: XP_022928329.1 (54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 204.1 bits (518), Expect = 7.2e-49
Identity = 110/133 (82.71%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MAMSQTRLF-RSIINAKDAIKVTSVRTFAAGGKKKGSK-GGAAADGPKASILSKEVKSST 60
           MAMSQ RL  RS++N KD IK+T+VRTFAAGGKKKGSK GGAA D PKASILSKEVKS+T
Sbjct: 1   MAMSQIRLVRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTT 60

Query: 61  VVGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADP VMADSEYPDWLWRLIDK PALSEL+RK+ + LPYEDLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELQRKDAKTLPYEDLKRFVKLDTR 120

Query: 121 ASIKENNSIKAKN 132
           A IKENNS KAKN
Sbjct: 121 ARIKENNSSKAKN 133

[Close]

BLAST of MS009794 vs. ExPASy Swiss-Prot
Match: Q9CPW3 (39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.5e-04
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 23 SVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSST--VVGANILKEGADPNVMADSEYP 82
          S+R +A     KG KGG AA+  K   +  +    T   +G NI KEG D  + ADSEYP
Sbjct: 31 SIREYAKKPVGKGGKGGVAAEALKDPEVCTDPTQLTTHAMGVNIYKEGQDVALKADSEYP 90

Query: 83 DWLWRL 87
           WL+++
Sbjct: 91 TWLFQV 96

[Close]

BLAST of MS009794 vs. ExPASy TrEMBL
Match: A0A6J1DJG1 (54S ribosomal protein L37, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111021461 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.7e-62
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MAMSQTRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAMSQ+RLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV
Sbjct: 1   MAMSQSRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60

Query: 61  GANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADP VMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS
Sbjct: 61  GANILKEGADPKVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120

Query: 121 IKENNSIKAKN 132
           IKENNSIKAKN
Sbjct: 121 IKENNSIKAKN 131

[Close]

BLAST of MS009794 vs. ExPASy TrEMBL
Match: A0A6J1JQ61 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111486735 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.5e-52
Identity = 112/132 (84.85%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MAMSQTRLF-RSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTV 60
           MAMSQ RLF RS++N KD IK+T+VRTFAAGGKKKGSKGGAA D PKASILSKEVKS+TV
Sbjct: 1   MAMSQIRLFRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGAATDAPKASILSKEVKSTTV 60

Query: 61  VGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRA 120
           VGANILKEGADP VMADSEYPDWLWRLIDK PALSELRRK+ + LPYEDLKRFVKLD RA
Sbjct: 61  VGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELRRKDAKTLPYEDLKRFVKLDTRA 120

Query: 121 SIKENNSIKAKN 132
            IKENNS KAKN
Sbjct: 121 RIKENNSSKAKN 132

[Close]

BLAST of MS009794 vs. ExPASy TrEMBL
Match: A0A6J1EKI4 (54S ribosomal protein L37, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435190 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 110/133 (82.71%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 1   MAMSQTRLF-RSIINAKDAIKVTSVRTFAAGGKKKGSK-GGAAADGPKASILSKEVKSST 60
           MAMSQ RL  RS++N KD IK+T+VRTFAAGGKKKGSK GGAA D PKASILSKEVKS+T
Sbjct: 1   MAMSQIRLVRRSLLNTKDLIKLTNVRTFAAGGKKKGSKGGGAATDAPKASILSKEVKSTT 60

Query: 61  VVGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNR 120
           VVGANILKEGADP VMADSEYPDWLWRLIDK PALSEL+RK+ + LPYEDLKRFVKLD R
Sbjct: 61  VVGANILKEGADPKVMADSEYPDWLWRLIDKRPALSELQRKDAKTLPYEDLKRFVKLDTR 120

Query: 121 ASIKENNSIKAKN 132
           A IKENNS KAKN
Sbjct: 121 ARIKENNSSKAKN 133

[Close]

BLAST of MS009794 vs. ExPASy TrEMBL
Match: A0A7J6DU88 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014279 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.9e-47
Identity = 105/131 (80.15%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 1   MAMSQTRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAM+  RLFRS I   D +     RTFAAG KKKG+KGGAA D PKASILSKEVKSSTVV
Sbjct: 15  MAMNHARLFRSRIVGNDEVSSVFRRTFAAGAKKKGAKGGAAGDAPKASILSKEVKSSTVV 74

Query: 61  GANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADP V+ADSEYPDWL+ LIDK PALSELRR+NVE LPYEDLKRFVKLDNRA 
Sbjct: 75  GANILKEGADPKVLADSEYPDWLFHLIDKRPALSELRRRNVETLPYEDLKRFVKLDNRAR 134

Query: 121 IKENNSIKAKN 132
           IKENNSIKAKN
Sbjct: 135 IKENNSIKAKN 145

[Close]

BLAST of MS009794 vs. ExPASy TrEMBL
Match: A0A7J6EZF4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_013579 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.9e-47
Identity = 105/131 (80.15%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 1   MAMSQTRLFRSIINAKDAIKVTSVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSSTVV 60
           MAM+  RLFRS I   D +     RTFAAG KKKG+KGGAA D PKASILSKEVKSSTVV
Sbjct: 1   MAMNHARLFRSRIVGNDEVSSVFRRTFAAGAKKKGAKGGAAGDAPKASILSKEVKSSTVV 60

Query: 61  GANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRAS 120
           GANILKEGADP V+ADSEYPDWL+ LIDK PALSELRR+NVE LPYEDLKRFVKLDNRA 
Sbjct: 61  GANILKEGADPKVLADSEYPDWLFHLIDKRPALSELRRRNVETLPYEDLKRFVKLDNRAR 120

Query: 121 IKENNSIKAKN 132
           IKENNSIKAKN
Sbjct: 121 IKENNSIKAKN 131

[Close]

BLAST of MS009794 vs. TAIR 10
Match: AT3G01740.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-39
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 14  NAKDAIKVTSVRTFAAGGK--KKGSKGGAAADGPKASILSKEVKSSTVVGANILKEGADP 73
           ++KD ++    RTFAA     KKG KGG A+D PK S L+KE+KS+TVVGAN LK+G+DP
Sbjct: 11  SSKDVVR----RTFAAAASKAKKGGKGGGASDAPKGSSLTKEIKSTTVVGANTLKDGSDP 70

Query: 74  NVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRASIKENNSIKAKN 132
            ++ DS+YPDWLW L+DK PALSELRRKNVE LPY+DLKRFVKLD R  IKENNSIKAKN
Sbjct: 71  KILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTRGKIKENNSIKAKN 126

[Close]

BLAST of MS009794 vs. TAIR 10
Match: AT5G14290.1 (Mitochondrial ribosomal protein L37 )

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-34
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 0


Query: 3   MSQTRLF-RSIINAKDAIKVTSVRTF--AAGGKKKGSKGGAAADGPKASILSKEVKSSTV 62
           M+  R+F  SI  +KD ++    RTF  AAG  KK  +G    D PKAS LSKE+KSS V
Sbjct: 1   MNLIRMFGDSISRSKDVMRFVCQRTFATAAGKAKKVGRGDGGNDAPKASNLSKEIKSSMV 60

Query: 63  VGANILKEGADPNVMADSEYPDWLWRLIDKHPALSELRRKNVEALPYEDLKRFVKLDNRA 122
           V AN LK+G DP ++ +S++PD+LW L+DK PALSELRRKNVE L ++DLKRFVKLD RA
Sbjct: 61  VSANTLKDGLDPKILPNSDHPDYLWHLLDKRPALSELRRKNVETLSFDDLKRFVKLDTRA 120

Query: 123 SIKENNSIKAKN 132
            IKEN+SIKAKN
Sbjct: 121 RIKENHSIKAKN 132

The following BLAST results are available for this feature:

BLAST of MS009794 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154133.1	9.7e-62	98.47	54S ribosomal protein L37, mitochondrial-like [Momordica charantia]	[more]
XP_022989738.1	1.5e-51	84.85	54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima] >XP_022989739.1...	[more]
XP_038883607.1	3.2e-49	82.71	54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida] >XP_0388...	[more]
XP_038883606.1	3.2e-49	82.71	39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]	[more]
XP_022928329.1	7.2e-49	82.71	54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata] >XP_022928331...	[more]

BLAST of MS009794 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CPW3	9.5e-04	40.91	39S ribosomal protein L54, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl54 PE=1...	[more]

BLAST of MS009794 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJG1	4.7e-62	98.47	54S ribosomal protein L37, mitochondrial-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1JQ61	7.5e-52	84.85	54S ribosomal protein L37, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EKI4	3.5e-49	82.71	54S ribosomal protein L37, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A7J6DU88	1.9e-47	80.15	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014279 PE=4 SV=1	[more]
A0A7J6EZF4	1.9e-47	80.15	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_013579 PE=4 SV=1	[more]

BLAST of MS009794 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01740.1	1.1e-39	67.50	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	2.4e-34	59.85	Mitochondrial ribosomal protein L37	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013870	Ribosomal protein L37, mitochondrial	PFAM	PF08561	Ribosomal_L37	coord: 51..90 e-value: 7.1E-12 score: 45.9
IPR013870	Ribosomal protein L37, mitochondrial	PANTHER	PTHR28595	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009794.1	MS009794.1	mRNA