MS009785 (gene) Bitter gourd (TR) v1

Overview


Name	MS009785
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF1713 domain-containing protein
Location	scaffold173: 271024 .. 271413 (-)
RNA-Seq Expression	MS009785
Synteny	MS009785

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGATGCTCCAAAAACTCGTCAGAAAATCGCCACCCACAAGAATAATTGCTGCTTTGCGTAGCCAGCCGTCACAAAATCTCTCAGCACCCTGCATTCTTCACCAGCCGCTCGATATCATCAGTAAACCAGATGGGCATTGGGATGCTAATTTGAACTCAGTTTCTGCTTCGAATCCGTCTCAGTTTTTGCAGTTTTACCCTAGTTTTCCGTTTGGGCTTTGCTTGCCGCAAATCTCCTCAACTGGGTTGGTTCCGTTCGTGCCGGATTATGATGAGCAAGATGATTCTCGGAAGTTGTGGGCTGATAGCGTGAAAAAGAAGAGGAAGCGGAAGATGAACAAGCACAAGTACAAGAAGCTGCGGAAGCGGCTCCGGAGGCAGACA

mRNA sequence

ATGGCGTCGATGCTCCAAAAACTCGTCAGAAAATCGCCACCCACAAGAATAATTGCTGCTTTGCGTAGCCAGCCGTCACAAAATCTCTCAGCACCCTGCATTCTTCACCAGCCGCTCGATATCATCAGTAAACCAGATGGGCATTGGGATGCTAATTTGAACTCAGTTTCTGCTTCGAATCCGTCTCAGTTTTTGCAGTTTTACCCTAGTTTTCCGTTTGGGCTTTGCTTGCCGCAAATCTCCTCAACTGGGTTGGTTCCGTTCGTGCCGGATTATGATGAGCAAGATGATTCTCGGAAGTTGTGGGCTGATAGCGTGAAAAAGAAGAGGAAGCGGAAGATGAACAAGCACAAGTACAAGAAGCTGCGGAAGCGGCTCCGGAGGCAGACA

Coding sequence (CDS)

ATGGCGTCGATGCTCCAAAAACTCGTCAGAAAATCGCCACCCACAAGAATAATTGCTGCTTTGCGTAGCCAGCCGTCACAAAATCTCTCAGCACCCTGCATTCTTCACCAGCCGCTCGATATCATCAGTAAACCAGATGGGCATTGGGATGCTAATTTGAACTCAGTTTCTGCTTCGAATCCGTCTCAGTTTTTGCAGTTTTACCCTAGTTTTCCGTTTGGGCTTTGCTTGCCGCAAATCTCCTCAACTGGGTTGGTTCCGTTCGTGCCGGATTATGATGAGCAAGATGATTCTCGGAAGTTGTGGGCTGATAGCGTGAAAAAGAAGAGGAAGCGGAAGATGAACAAGCACAAGTACAAGAAGCTGCGGAAGCGGCTCCGGAGGCAGACA

Protein sequence

MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASNPSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYKKLRKRLRRQT

Homology

[Close]

BLAST of MS009785 vs. NCBI nr
Match: XP_022154198.1 (uncharacterized protein LOC111021516 [Momordica charantia] >XP_022154199.1 uncharacterized protein LOC111021516 [Momordica charantia])

HSP 1 Score: 255.0 bits (650), Expect = 3.5e-64
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN
Sbjct: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. NCBI nr
Match: KAA0056277.1 (DUF1713 domain-containing protein [Cucumis melo var. makuwa] >TYK05222.1 DUF1713 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-49
Identity = 108/130 (83.08%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQKL+RKSPP+R+IAAL +Q SQNLS P ILHQPLD   K D H  +NLNS S SN
Sbjct: 1   MASMLQKLIRKSPPSRLIAALGAQTSQNLSTPFILHQPLDFDKKSDAHSHSNLNSASTSN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSQF QFYPSFPFGLCLPQISSTGL+PF PDY EQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSQFYPSFPFGLCLPQISSTGLLPFEPDYVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. NCBI nr
Match: KAE8650785.1 (hypothetical protein Csa_017463 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 9.3e-49
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQ L+RKSPPTR+IAAL +Q SQNLS P ILHQPLD   KPD H  +N+NS S SN
Sbjct: 72  MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 131

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS F QFYPSFPFGLCLPQISSTGL+PF PD  EQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 132 PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 191

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 192 KLRKRLRRQT 201

[Close]

BLAST of MS009785 vs. NCBI nr
Match: XP_011651574.1 (uncharacterized protein LOC101220058 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 9.3e-49
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQ L+RKSPPTR+IAAL +Q SQNLS P ILHQPLD   KPD H  +N+NS S SN
Sbjct: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS F QFYPSFPFGLCLPQISSTGL+PF PD  EQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. NCBI nr
Match: XP_022928332.1 (uncharacterized protein LOC111435191 [Cucurbita moschata] >KAG6588923.1 hypothetical protein SDJN03_17488, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MAS+LQKL+RKSPPTR IAAL SQ SQNLS P ILHQPLDI  KPDGH D+NLN+VS SN
Sbjct: 1   MASILQKLIRKSPPTRTIAALASQTSQNLSLPYILHQPLDIDRKPDGHCDSNLNAVSTSN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSQF  F+PSFPFGLCL QISSTG + F PDY E DDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSLFFPSFPFGLCLQQISSTGSIRFEPDYVEDDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. ExPASy TrEMBL
Match: A0A6J1DLC2 (uncharacterized protein LOC111021516 OS=Momordica charantia OX=3673 GN=LOC111021516 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN
Sbjct: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. ExPASy TrEMBL
Match: A0A5A7UNU9 (DUF1713 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00280 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.3e-50
Identity = 108/130 (83.08%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQKL+RKSPP+R+IAAL +Q SQNLS P ILHQPLD   K D H  +NLNS S SN
Sbjct: 1   MASMLQKLIRKSPPSRLIAALGAQTSQNLSTPFILHQPLDFDKKSDAHSHSNLNSASTSN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSQF QFYPSFPFGLCLPQISSTGL+PF PDY EQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSQFYPSFPFGLCLPQISSTGLLPFEPDYVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. ExPASy TrEMBL
Match: A0A0A0LDP0 (DUF1713 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.5e-49
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQ L+RKSPPTR+IAAL +Q SQNLS P ILHQPLD   KPD H  +N+NS S SN
Sbjct: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS F QFYPSFPFGLCLPQISSTGL+PF PD  EQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. ExPASy TrEMBL
Match: A0A6J1EJL0 (uncharacterized protein LOC111435191 OS=Cucurbita moschata OX=3662 GN=LOC111435191 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MAS+LQKL+RKSPPTR IAAL SQ SQNLS P ILHQPLDI  KPDGH D+NLN+VS SN
Sbjct: 1   MASILQKLIRKSPPTRTIAALASQTSQNLSLPYILHQPLDIDRKPDGHCDSNLNAVSTSN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSQF  F+PSFPFGLCL QISSTG + F PDY E DDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSLFFPSFPFGLCLQQISSTGSIRFEPDYVEDDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. ExPASy TrEMBL
Match: A0A6J1F832 (uncharacterized protein LOC111441723 OS=Cucurbita moschata OX=3662 GN=LOC111441723 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 104/130 (80.00%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRIIAALRSQPSQNLSAPCILHQPLDIISKPDGHWDANLNSVSASN 60
           MASMLQKLVRKSPPTR+IAAL +Q SQN   P ILHQPLD   KPD H D+NLNSVS SN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSQFLQFYPSFPFGLCLPQISSTGLVPFVPDYDEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS F  FYPSFPFG CLPQISS+G++PF P++ EQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPEFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of MS009785 vs. TAIR 10
Match: AT5G63150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1713, mitochondria (InterPro:IPR013177); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 8.2e-11
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 41  IISKPDGHWDAN-LNSVSASNPSQFLQFYPSFPFGLCL--PQISSTGLVPFVPDYDEQDD 100
           +I KPD     N L ++S +  +Q ++FYPSF  GLCL    I    L       +E++D
Sbjct: 44  VIEKPDPVSFTNPLITLSGNESNQPMRFYPSFSMGLCLNPKMIQGLDLAETASLEEEEED 103

Query: 101 SRK--LWADSVKKKRKRKMNKHKYKKLRKRLRRQT 131
           +++  ++ADSVKKKRK+KMNKHKY+KLRK+L R++
Sbjct: 104 TKEIVIYADSVKKKRKKKMNKHKYRKLRKQLGRKS 138

The following BLAST results are available for this feature:

BLAST of MS009785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154198.1	3.5e-64	100.00	uncharacterized protein LOC111021516 [Momordica charantia] >XP_022154199.1 uncha...	[more]
KAA0056277.1	1.1e-49	83.08	DUF1713 domain-containing protein [Cucumis melo var. makuwa] >TYK05222.1 DUF1713...	[more]
KAE8650785.1	9.3e-49	81.54	hypothetical protein Csa_017463 [Cucumis sativus]	[more]
XP_011651574.1	9.3e-49	81.54	uncharacterized protein LOC101220058 [Cucumis sativus]	[more]
XP_022928332.1	2.1e-48	82.31	uncharacterized protein LOC111435191 [Cucurbita moschata] >KAG6588923.1 hypothet...	[more]

BLAST of MS009785 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009785 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLC2	1.7e-64	100.00	uncharacterized protein LOC111021516 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7UNU9	5.3e-50	83.08	DUF1713 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0LDP0	4.5e-49	81.54	DUF1713 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=...	[more]
A0A6J1EJL0	1.0e-48	82.31	uncharacterized protein LOC111435191 OS=Cucurbita moschata OX=3662 GN=LOC1114351...	[more]
A0A6J1F832	1.4e-47	80.00	uncharacterized protein LOC111441723 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]

BLAST of MS009785 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63150.1	8.2e-11	45.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013177	Mitochondrial mRNA-processing protein COX24, C-terminal	SMART	SM01155	DUF1713_2	coord: 102..129 e-value: 3.3E-7 score: 39.9
IPR013177	Mitochondrial mRNA-processing protein COX24, C-terminal	PFAM	PF08213	DUF1713	coord: 103..128 e-value: 1.5E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..130
None	No IPR available	PANTHER	PTHR32035	AURORA KINASE A-INTERACTING PROTEIN	coord: 1..130
None	No IPR available	PANTHER	PTHR32035:SF8	SUBFAMILY NOT NAMED	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009785.1	MS009785.1	mRNA