MS009779 (gene) Bitter gourd (TR) v1

Overview
NameMS009779
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHeat-shock protein
Locationscaffold173: 193863 .. 194081 (+)
RNA-Seq ExpressionMS009779
SyntenyMS009779
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCAATCACCTTCCTCTGTGGCTTCTTCACTTCCCCTTTGGGCACCGTCACCGTTAGCACTCCGTTATCCATCGCTACCGTTACCTCGCTGCCCTTCGCATTCTCCGGCAGCCGGAACCTCCTGCAGAACTTCCCCCGGCACCGCTCCATGCGCCACCACTTATTTCCACTGCTCTCATCGTTCTCGTCTCCGATACTTGCTCTATCTCCTTCGCTT

mRNA sequence

ATCTCAATCACCTTCCTCTGTGGCTTCTTCACTTCCCCTTTGGGCACCGTCACCGTTAGCACTCCGTTATCCATCGCTACCGTTACCTCGCTGCCCTTCGCATTCTCCGGCAGCCGGAACCTCCTGCAGAACTTCCCCCGGCACCGCTCCATGCGCCACCACTTATTTCCACTGCTCTCATCGTTCTCGTCTCCGATACTTGCTCTATCTCCTTCGCTT

Coding sequence (CDS)

ATCTCAATCACCTTCCTCTGTGGCTTCTTCACTTCCCCTTTGGGCACCGTCACCGTTAGCACTCCGTTATCCATCGCTACCGTTACCTCGCTGCCCTTCGCATTCTCCGGCAGCCGGAACCTCCTGCAGAACTTCCCCCGGCACCGCTCCATGCGCCACCACTTATTTCCACTGCTCTCATCGTTCTCGTCTCCGATACTTGCTCTATCTCCTTCGCTT

Protein sequence

ISITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLSSFSSPILALSPSL
Homology
BLAST of MS009779 vs. NCBI nr
Match: VFQ82571.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 61.2 bits (147), Expect = 4.2e-06
Identity = 40/64 (62.50%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 8  GFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLSSFSSPIL 67
          GFFTS LGTVTVSTP S+   T   FAFSGSRN  +N P  RS R H    LSSFSS  L
Sbjct: 6  GFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCH----LSSFSSFSL 65

Query: 68 ALSP 72
           LSP
Sbjct: 66 LLSP 65

BLAST of MS009779 vs. NCBI nr
Match: RWR97313.1 (hypothetical protein CKAN_02674100 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 60.5 bits (145), Expect = 7.1e-06
Identity = 40/69 (57.97%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 3  ITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLSSF 62
          + F  GFFT  LGTVTVSTP SIA  TS   AFSG+ NLL+N P   S R H    LS F
Sbjct: 1  MAFTSGFFTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNLLRNLPLLLSTRCH----LSFF 60

Query: 63 SSPILALSP 72
          SS  L LSP
Sbjct: 61 SSCSLLLSP 65

BLAST of MS009779 vs. NCBI nr
Match: KVI09872.1 (hypothetical protein Ccrd_011724 [Cynara cardunculus var. scolymus])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 38/67 (56.72%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 3   ITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPL--LS 62
           I F  GFF S  GTVTVSTP SI   TS  FA SGS NL  NFP   S R H+ PL  LS
Sbjct: 45  IDFTSGFFISTFGTVTVSTPFSIDAFTSSTFALSGSLNLRINFPLLLSTRCHVSPLSSLS 104

Query: 63  SFSSPIL 68
            F SP++
Sbjct: 105 LFLSPLI 111

BLAST of MS009779 vs. NCBI nr
Match: ACU16052.1 (unknown [Glycine max])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 1  ISITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLS 60
          IS+ F  GF +  LGT+TVSTP SI   TS   A SG++N L NFPR  S R H F  LS
Sbjct: 14 ISMVFTSGFLSGTLGTITVSTPFSIEAFTSSTLASSGNQNFLWNFPRPLSTRCH-FSFLS 73

Query: 61 SFSS 65
          SFS+
Sbjct: 74 SFST 76

BLAST of MS009779 vs. NCBI nr
Match: RWR97332.1 (hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 1   ISITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLS 60
           +S+  + GF T  LGTVTVSTP SIA  TS   AFSG+ N L+N P   S R H    LS
Sbjct: 41  MSMALMSGFLTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNRLRNLPLLLSTRCH----LS 100

Query: 61  SFSSPILALSP 72
            FSS  L LSP
Sbjct: 101 FFSSFSLLLSP 107

BLAST of MS009779 vs. ExPASy TrEMBL
Match: A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 40/64 (62.50%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 8  GFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLSSFSSPIL 67
          GFFTS LGTVTVSTP S+   T   FAFSGSRN  +N P  RS R H    LSSFSS  L
Sbjct: 6  GFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCH----LSSFSSFSL 65

Query: 68 ALSP 72
           LSP
Sbjct: 66 LLSP 65

BLAST of MS009779 vs. ExPASy TrEMBL
Match: A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 40/69 (57.97%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 3  ITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLSSF 62
          + F  GFF+S LGTVTVSTP SIA  TS   AFSG RN  +N P  RS R H    LS F
Sbjct: 1  MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCH----LSFF 60

Query: 63 SSPILALSP 72
          SS  L LSP
Sbjct: 61 SSCSLVLSP 65

BLAST of MS009779 vs. ExPASy TrEMBL
Match: A0A3S3NL82 (Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02674100 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 40/69 (57.97%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 3  ITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLSSF 62
          + F  GFFT  LGTVTVSTP SIA  TS   AFSG+ NLL+N P   S R H    LS F
Sbjct: 1  MAFTSGFFTCSLGTVTVSTPFSIAAFTSSTLAFSGNLNLLRNLPLLLSTRCH----LSFF 60

Query: 63 SSPILALSP 72
          SS  L LSP
Sbjct: 61 SSCSLLLSP 65

BLAST of MS009779 vs. ExPASy TrEMBL
Match: A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.9e-06
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  ISITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLS 60
          +S+  + GFF+S LGT+TV TP S+   TS   AFSGS NLL NFP+ RS+  H    LS
Sbjct: 1  MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCH----LS 60

Query: 61 SFSSPILALSP 72
           FSS  L LSP
Sbjct: 61 FFSSCSLLLSP 67

BLAST of MS009779 vs. ExPASy TrEMBL
Match: C6T314 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 1  ISITFLCGFFTSPLGTVTVSTPLSIATVTSLPFAFSGSRNLLQNFPRHRSMRHHLFPLLS 60
          IS+ F  GF +  LGT+TVSTP SI   TS   A SG++N L NFPR  S R H F  LS
Sbjct: 14 ISMVFTSGFLSGTLGTITVSTPFSIEAFTSSTLASSGNQNFLWNFPRPLSTRCH-FSFLS 73

Query: 61 SFSS 65
          SFS+
Sbjct: 74 SFST 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
VFQ82571.14.2e-0662.50unnamed protein product [Cuscuta campestris][more]
RWR97313.17.1e-0657.97hypothetical protein CKAN_02674100 [Cinnamomum micranthum f. kanehirae][more]
KVI09872.14.6e-0556.72hypothetical protein Ccrd_011724 [Cynara cardunculus var. scolymus][more]
ACU16052.14.6e-0554.69unknown [Glycine max][more]
RWR97332.11.8e-0453.52hypothetical protein CKAN_02676000 [Cinnamomum micranthum f. kanehirae][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A484M1B12.0e-0662.50Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... [more]
A0A7C9D9Y32.6e-0657.97Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A3S3NL823.5e-0657.97Uncharacterized protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_... [more]
A0A0A0KSC05.9e-0653.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1[more]
C6T3142.2e-0554.69Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009779.1MS009779.1mRNA