MS009728 (gene) Bitter gourd (TR) v1

Overview


Name	MS009728
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S acidic ribosomal protein P1-like
Location	scaffold411: 170912 .. 171586 (-)
RNA-Seq Expression	MS009728
Synteny	MS009728

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCAGTGAGCTTGCTTGCGCTTACGCCGCCATGGCTCTTTACGACGATGGAATTGCAATCACTGTATGAATGACCTCTCGTCCGTTTTATTTTTGTTGAACTGCCTAATGCATTACTAATCTGAAAATTGGATTTAGGCGGAGAAGATTGCAGCCGTAGTTGCAGCCGCGGGGCTCTGTGTGGAATCTTACTGGCCCAGCCTCTTTGCAAAGTTGGCGGAGAAGAGGAATATCGGCGACCTTCTTCTCAACGTTGGTTGTGGTGGTGGCGCTGCGGCTCCCGTGTCTGTAGCCGCTCCTGCTGGTGGTGCTGCTGCCTCTGCCGCCGCTCCTGCCGTTGAGGAAAAGAAGGTACGATTGTGAATGTTATTTCTTGTTATTGTTATAATTTAGCAACAGCTTTGTTAGAATTATTTCGTTCTTTTACAACGTAAGTTTGTTTCAGCTTCTTTTTGGACTTCTCTAAGATCTAACAATAACGATCAAACTCGTACTTTTACAATTTATATTCGCCATGTAACATTGAAATTGGTAGTTTATTTAGCATTAATCTTGCTTGTCGCAATTTCGTTTCCTTGGCCACTTGCGATTTGTTGTTTATTTGAGCGTGTTTTTGCAGGAAGAGCCGAAAGAGGAGAGCGATGACGACATGGGATTCAGCTTATTCGAT

mRNA sequence

ATGTCTACCAGTGAGCTTGCTTGCGCTTACGCCGCCATGGCTCTTTACGACGATGGAATTGCAATCACTGCGGAGAAGATTGCAGCCGTAGTTGCAGCCGCGGGGCTCTGTGTGGAATCTTACTGGCCCAGCCTCTTTGCAAAGTTGGCGGAGAAGAGGAATATCGGCGACCTTCTTCTCAACGTTGGTTGTGGTGGTGGCGCTGCGGCTCCCGTGTCTGTAGCCGCTCCTGCTGGTGGTGCTGCTGCCTCTGCCGCCGCTCCTGCCGTTGAGGAAAAGAAGGAAGAGCCGAAAGAGGAGAGCGATGACGACATGGGATTCAGCTTATTCGAT

Coding sequence (CDS)

ATGTCTACCAGTGAGCTTGCTTGCGCTTACGCCGCCATGGCTCTTTACGACGATGGAATTGCAATCACTGCGGAGAAGATTGCAGCCGTAGTTGCAGCCGCGGGGCTCTGTGTGGAATCTTACTGGCCCAGCCTCTTTGCAAAGTTGGCGGAGAAGAGGAATATCGGCGACCTTCTTCTCAACGTTGGTTGTGGTGGTGGCGCTGCGGCTCCCGTGTCTGTAGCCGCTCCTGCTGGTGGTGCTGCTGCCTCTGCCGCCGCTCCTGCCGTTGAGGAAAAGAAGGAAGAGCCGAAAGAGGAGAGCGATGACGACATGGGATTCAGCTTATTCGAT

Protein sequence

MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD

Homology

[Close]

BLAST of MS009728 vs. NCBI nr
Match: XP_022140845.1 (60S acidic ribosomal protein P1-like [Momordica charantia])

HSP 1 Score: 203.8 bits (517), Expect = 7.9e-49
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of MS009728 vs. NCBI nr
Match: XP_023551718.1 (60S acidic ribosomal protein P1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.7 bits (491), Expect = 8.2e-46
Identity = 105/111 (94.59%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS+SELACAYAA+ALYDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 27  MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 86

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPVSVAA AGGA+ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 87  NVGCGGGAAAPVSVAASAGGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 137

[Close]

BLAST of MS009728 vs. NCBI nr
Match: XP_022984373.1 (60S acidic ribosomal protein P1 [Cucurbita maxima])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS SELACAYAA+ALYDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 27  MSRSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 86

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPVSVAA AGGA+ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 87  NVGCGGGAAAPVSVAASAGGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 137

[Close]

BLAST of MS009728 vs. NCBI nr
Match: XP_022922611.1 (60S acidic ribosomal protein P1 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS+SELACAYAA+ALYDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPVSVAA A GA+ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of MS009728 vs. NCBI nr
Match: KAG6574265.1 (60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAA+AL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 23  MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 82

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAA VSVAAPAGG AASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 83  NVGCGGGAAAAVSVAAPAGG-AASAAAPAVEEKKEEPKEESDDDMGFSLFD 132

[Close]

BLAST of MS009728 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.0e-35
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           M++ ELAC YAA+ L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           +VG GGG AAPV+ AAPAGGAAA AAAPAVEEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGG-AAPVAAAAPAGGAAA-AAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of MS009728 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 5.4e-32
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 112
           +NVG GGG  APV+ AAPA G  A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MS009728 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-31
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           +NVG GGG  APV+ AAPA G  A+AA  A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MS009728 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGC-GGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           +NVG  GGG  APVS AAPA    A+AAAPA EEKK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MS009728 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-25
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELAC YAA+ L+DDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVG GGG AAP + A  AGGA A+ AAP  EEKKE  +EE   DMGFSLFD
Sbjct: 61  NVGAGGG-AAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEE---DMGFSLFD 107

[Close]

BLAST of MS009728 vs. ExPASy TrEMBL
Match: A0A6J1CGB2 (60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011416 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.8e-49
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of MS009728 vs. ExPASy TrEMBL
Match: A0A6J1JAB2 (60S acidic ribosomal protein P1 OS=Cucurbita maxima OX=3661 GN=LOC111482693 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.8e-46
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS SELACAYAA+ALYDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 27  MSRSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 86

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPVSVAA AGGA+ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 87  NVGCGGGAAAPVSVAASAGGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 137

[Close]

BLAST of MS009728 vs. ExPASy TrEMBL
Match: A0A6J1E4K8 (60S acidic ribosomal protein P1 OS=Cucurbita moschata OX=3662 GN=LOC111430567 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MS+SELACAYAA+ALYDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSSSELACAYAALALYDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAAPVSVAA A GA+ASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAPVSVAASASGASASAAAPAVEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of MS009728 vs. ExPASy TrEMBL
Match: A0A6J1G2H4 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111450051 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSELACAYAA+AL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELACAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAA VSVAAPAGG AASAAAPAVEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGG-AASAAAPAVEEKKEEPKEESDDDMGFSLFD 110

[Close]

BLAST of MS009728 vs. ExPASy TrEMBL
Match: A0A6J1HYH2 (60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111467766 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MSTSELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
           MSTSEL CAYAA+AL+DDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLL
Sbjct: 1   MSTSELVCAYAALALHDDGIAITADKIAAVVAAAGLCVESYWPSLFAKLAEKRDIGDLLL 60

Query: 61  NVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           NVGCGGGAAA VSVAAPAGG AASAAAPAVEEK+EEPKEESDDDMGFSLFD
Sbjct: 61  NVGCGGGAAAAVSVAAPAGG-AASAAAPAVEEKEEEPKEESDDDMGFSLFD 110

[Close]

BLAST of MS009728 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-33
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 112
           +NVG GGG  APV+ AAPA G  A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MS009728 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-33
Identity = 77/113 (68.14%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEE-KKEEPKEESDDDMGFSLFD 112
           +NVG GGG  APV+ AAPA G  A+AAAPA EE KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MS009728 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-32
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           +NVG GGG  APV+ AAPA G  A+AA  A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MS009728 vs. TAIR 10
Match: AT1G01100.2 (60S acidic ribosomal protein family )

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-32
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           +NVG GGG  APV+ AAPA G  A+AA  A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MS009728 vs. TAIR 10
Match: AT1G01100.4 (60S acidic ribosomal protein family )

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-32
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MST-SELACAYAAMALYDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
           MST  ELAC+YA M L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGCGGGAAAPVSVAAPAGGAAASAAAPAVEEKKEEPKEESDDDMGFSLFD 112
           +NVG GGG  APV+ AAPA G  A+AA  A E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

The following BLAST results are available for this feature:

BLAST of MS009728 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140845.1	7.9e-49	100.00	60S acidic ribosomal protein P1-like [Momordica charantia]	[more]
XP_023551718.1	8.2e-46	94.59	60S acidic ribosomal protein P1 [Cucurbita pepo subsp. pepo]	[more]
XP_022984373.1	1.4e-45	94.59	60S acidic ribosomal protein P1 [Cucurbita maxima]	[more]
XP_022922611.1	4.1e-45	93.69	60S acidic ribosomal protein P1 [Cucurbita moschata]	[more]
KAG6574265.1	2.6e-44	94.59	60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS009728 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	3.0e-35	77.48	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
Q8LEQ0	5.4e-32	68.14	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
Q8LCW9	3.5e-31	66.07	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
O23095	1.0e-30	67.26	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
P29763	3.7e-25	61.26	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of MS009728 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGB2	3.8e-49	100.00	60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JAB2	6.8e-46	94.59	60S acidic ribosomal protein P1 OS=Cucurbita maxima OX=3661 GN=LOC111482693 PE=3...	[more]
A0A6J1E4K8	2.0e-45	93.69	60S acidic ribosomal protein P1 OS=Cucurbita moschata OX=3662 GN=LOC111430567 PE...	[more]
A0A6J1G2H4	1.3e-44	94.59	60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]
A0A6J1HYH2	1.1e-43	92.79	60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111467766...	[more]

BLAST of MS009728 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47700.1	3.8e-33	68.14	60S acidic ribosomal protein family	[more]
AT5G47700.2	3.8e-33	68.14	60S acidic ribosomal protein family	[more]
AT1G01100.1	2.5e-32	66.07	60S acidic ribosomal protein family	[more]
AT1G01100.2	2.5e-32	66.07	60S acidic ribosomal protein family	[more]
AT1G01100.4	2.5e-32	66.07	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..110 e-value: 2.4E-24 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..111
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..111
None	No IPR available	PANTHER	PTHR45696:SF22	60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED	coord: 1..111
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 5..110 e-value: 4.11616E-25 score: 88.9179
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..63 e-value: 2.6E-28 score: 99.6
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..111 score: 14.467661

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009728.1	MS009728.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome