MS009607 (gene) Bitter gourd (TR) v1

Overview
NameMS009607
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold813: 2657655 .. 2657834 (-)
RNA-Seq ExpressionMS009607
SyntenyMS009607
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAGTTGTAGAAGTCCTTGGCTGAGCATTAAGCAAACTTCAAGGCTTGTTGATTCCCTTTCTTCATTCAAATTGGGTAGCGGTAATAGAATCAATTTCTGGAAAGATTTATGGATTGGTTCCACTCTGTTAATGACTACCTTTCCATCAATCCTCAAGATCATCTCCAGTCCAAACGGT

mRNA sequence

AGCAGTTGTAGAAGTCCTTGGCTGAGCATTAAGCAAACTTCAAGGCTTGTTGATTCCCTTTCTTCATTCAAATTGGGTAGCGGTAATAGAATCAATTTCTGGAAAGATTTATGGATTGGTTCCACTCTGTTAATGACTACCTTTCCATCAATCCTCAAGATCATCTCCAGTCCAAACGGT

Coding sequence (CDS)

AGCAGTTGTAGAAGTCCTTGGCTGAGCATTAAGCAAACTTCAAGGCTTGTTGATTCCCTTTCTTCATTCAAATTGGGTAGCGGTAATAGAATCAATTTCTGGAAAGATTTATGGATTGGTTCCACTCTGTTAATGACTACCTTTCCATCAATCCTCAAGATCATCTCCAGTCCAAACGGT

Protein sequence

SSCRSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG
Homology
BLAST of MS009607 vs. NCBI nr
Match: TYK06564.1 (hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 1   SSCRSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 60
           +S +SPW+ I    R +++L+SFKLG+GNRI FW D+W+  T   T F  + ++   PNG
Sbjct: 103 NSLKSPWIGISMVRRKLETLTSFKLGNGNRIAFWSDVWVEETSFRTCFSMLFRVSLMPNG 162

BLAST of MS009607 vs. NCBI nr
Match: TYK00776.1 (hypothetical protein E5676_scaffold420G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 9.1e-07
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 4  RSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 61
          +SPW+SI +  R V+ L SFKLG+G+RI FW DLWI    L   +P + +I   PNG
Sbjct: 21 KSPWISISRVWRKVEPLISFKLGNGSRIAFWTDLWIDGLPLSIRYPQLFRIALLPNG 77

BLAST of MS009607 vs. NCBI nr
Match: KAA0032570.1 (protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 1   SSCRSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 60
           SS RSPW+SI +  R V+ L+ FK+G G+RI FW D W+ S  L   FP + +I   P G
Sbjct: 265 SSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLDPWMNSIALWIKFPRLYRIALPPKG 324

BLAST of MS009607 vs. NCBI nr
Match: KAA0043277.1 (hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK29341.1 hypothetical protein E5676_scaffold129G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-06
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 4   RSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 61
           +SPW+SI +T R V++L+ FKLG+G RI FW DLWIG  L    FP +  I   P+G
Sbjct: 94  KSPWVSISRTWRKVEALALFKLGNGRRIAFWTDLWIGLNL---QFPKLFIIALLPSG 147

BLAST of MS009607 vs. NCBI nr
Match: TYK02778.1 (hypothetical protein E5676_scaffold145G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-06
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 1   SSCRSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSP 59
           +S RSPW+SI +  R VDSL+SF LG+G RI FW D WIG+  +   +  + KI   P
Sbjct: 55  NSQRSPWVSIAKVWRSVDSLASFNLGNGRRIGFWSDPWIGNAPIKEQYSRLFKIALLP 112

BLAST of MS009607 vs. ExPASy TrEMBL
Match: A0A5D3C5F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00250 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 1   SSCRSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 60
           +S +SPW+ I    R +++L+SFKLG+GNRI FW D+W+  T   T F  + ++   PNG
Sbjct: 103 NSLKSPWIGISMVRRKLETLTSFKLGNGNRIAFWSDVWVEETSFRTCFSMLFRVSLMPNG 162

BLAST of MS009607 vs. ExPASy TrEMBL
Match: A0A5D3BR86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00430 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 4  RSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 61
          +SPW+SI +  R V+ L SFKLG+G+RI FW DLWI    L   +P + +I   PNG
Sbjct: 21 KSPWISISRVWRKVEPLISFKLGNGSRIAFWTDLWIDGLPLSIRYPQLFRIALLPNG 77

BLAST of MS009607 vs. ExPASy TrEMBL
Match: A0A5A7SP09 (Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00570 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 1   SSCRSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 60
           SS RSPW+SI +  R V+ L+ FK+G G+RI FW D W+ S  L   FP + +I   P G
Sbjct: 265 SSLRSPWISISRQQRKVEILAVFKVGKGDRILFWLDPWMNSIALWIKFPRLYRIALPPKG 324

BLAST of MS009607 vs. ExPASy TrEMBL
Match: A0A5A7TN98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00510 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 4   RSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSPNG 61
           +SPW+SI +T R V++L+ FKLG+G RI FW DLWIG  L    FP +  I   P+G
Sbjct: 94  KSPWVSISRTWRKVEALALFKLGNGRRIAFWTDLWIGLNL---QFPKLFIIALLPSG 147

BLAST of MS009607 vs. ExPASy TrEMBL
Match: A0A5D3BUW5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00370 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 1   SSCRSPWLSIKQTSRLVDSLSSFKLGSGNRINFWKDLWIGSTLLMTTFPSILKIISSP 59
           +S RSPW+SI +  R VDSL+SF LG+G RI FW D WIG+  +   +  + KI   P
Sbjct: 55  NSQRSPWVSIAKVWRSVDSLASFNLGNGRRIGFWSDPWIGNAPIKEQYSRLFKIALLP 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK06564.12.4e-0743.33hypothetical protein E5676_scaffold453G00250 [Cucumis melo var. makuwa][more]
TYK00776.19.1e-0749.12hypothetical protein E5676_scaffold420G00430 [Cucumis melo var. makuwa][more]
KAA0032570.14.5e-0646.67protein SAND [Cucumis melo var. makuwa] >TYK20915.1 protein SAND [Cucumis melo v... [more]
KAA0043277.17.7e-0650.88hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK293... [more]
TYK02778.17.7e-0648.28hypothetical protein E5676_scaffold145G00370 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C5F21.2e-0743.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BR864.4e-0749.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SP092.2e-0646.67Vacuolar fusion protein MON1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TN983.7e-0650.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BUW53.7e-0648.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009607.1MS009607.1mRNA