MS009600 (gene) Bitter gourd (TR) v1

Overview
NameMS009600
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReceptor-type tyrosine-protein like
Locationscaffold813: 2607117 .. 2607458 (-)
RNA-Seq ExpressionMS009600
SyntenyMS009600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGTCTTACGAATCTGAACAGCCACAAGACGAAGCCCAATCCCTCCTCCCCTCCGGCCACCGGCGGCCGTATCGCCGCCGCATCCACCTCCGCCGGAGGAGGCTGCCGACGGCCCGCCTCGGAGGGAGAAGGCCGCCGCGAGTGGTGGCGTTTTGGAGGTCATTTAGGGACATCCAAATTAGGAAGTGGCTGATGAGGGTGCGCTGCACGTGCCTCCTCAAAAAGCTTAATCCATTGTTCGGAAAAGGCACCGCCGGCGCCGTCGTTGCTTTTCAGAAAAGGATTCTAATGGAGATTTCGTTGGCCGTTCCTGTTCTTGGCGCCTCTCTCCTCTAC

mRNA sequence

ATGGCTCTGTCTTACGAATCTGAACAGCCACAAGACGAAGCCCAATCCCTCCTCCCCTCCGGCCACCGGCGGCCGTATCGCCGCCGCATCCACCTCCGCCGGAGGAGGCTGCCGACGGCCCGCCTCGGAGGGAGAAGGCCGCCGCGAGTGGTGGCGTTTTGGAGGTCATTTAGGGACATCCAAATTAGGAAGTGGCTGATGAGGGTGCGCTGCACGTGCCTCCTCAAAAAGCTTAATCCATTGTTCGGAAAAGGCACCGCCGGCGCCGTCGTTGCTTTTCAGAAAAGGATTCTAATGGAGATTTCGTTGGCCGTTCCTGTTCTTGGCGCCTCTCTCCTCTAC

Coding sequence (CDS)

ATGGCTCTGTCTTACGAATCTGAACAGCCACAAGACGAAGCCCAATCCCTCCTCCCCTCCGGCCACCGGCGGCCGTATCGCCGCCGCATCCACCTCCGCCGGAGGAGGCTGCCGACGGCCCGCCTCGGAGGGAGAAGGCCGCCGCGAGTGGTGGCGTTTTGGAGGTCATTTAGGGACATCCAAATTAGGAAGTGGCTGATGAGGGTGCGCTGCACGTGCCTCCTCAAAAAGCTTAATCCATTGTTCGGAAAAGGCACCGCCGGCGCCGTCGTTGCTTTTCAGAAAAGGATTCTAATGGAGATTTCGTTGGCCGTTCCTGTTCTTGGCGCCTCTCTCCTCTAC

Protein sequence

MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDIQIRKWLMRVRCTCLLKKLNPLFGKGTAGAVVAFQKRILMEISLAVPVLGASLLY
Homology
BLAST of MS009600 vs. NCBI nr
Match: KAG6593556.1 (hypothetical protein SDJN03_13032, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-30
Identity = 81/120 (67.50%), Postives = 90/120 (75.00%), Query Frame = 0

Query: 1   MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDI 60
           MA S+ES QP+DEAQSLL S HRRP+RR IHLRR+RLP  RLGG RPPR  A WRS   I
Sbjct: 1   MAQSHES-QPKDEAQSLLHSSHRRPHRRWIHLRRKRLPIVRLGGERPPRAAAHWRS---I 60

Query: 61  QIRKWLMRVRCTCLLKKLNPLFGKGT------AGAVVAFQKRILMEISLAVPVLGASLLY 115
           + RKWLM++RC CL+KKL  LFGKGT       G   AF KRILMEISLAVPVLGASL +
Sbjct: 61  RFRKWLMKIRCDCLVKKLKQLFGKGTGSGGDGGGGFDAFLKRILMEISLAVPVLGASLAF 116

BLAST of MS009600 vs. NCBI nr
Match: KAG7013982.1 (hypothetical protein SDJN02_24152, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 5.5e-29
Identity = 76/111 (68.47%), Postives = 84/111 (75.68%), Query Frame = 0

Query: 1   MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDI 60
           MA SYES Q QDEAQ LL SGHRRP RR IHLRR++L TARLGGRRPPR    WRS R +
Sbjct: 1   MAQSYES-QLQDEAQPLLLSGHRRPLRRWIHLRRKKLSTARLGGRRPPRAAVIWRSIRKV 60

Query: 61  QIRKWLMRVRCTCLLKKLNPLFGKGTAGAVVAFQKRILMEISLAVPVLGAS 112
           ++RKWLM+VRC C +KK+N LF K   G    F KRILMEIS AVPVLGAS
Sbjct: 61  RMRKWLMKVRCDCKVKKINELFDKDN-GGFNGFLKRILMEISSAVPVLGAS 109

BLAST of MS009600 vs. NCBI nr
Match: KAG6575440.1 (hypothetical protein SDJN03_26079, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 5.5e-29
Identity = 76/111 (68.47%), Postives = 84/111 (75.68%), Query Frame = 0

Query: 1   MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDI 60
           MA SYES Q QDEAQ LL SGHRRP RR IHLRR++L TARLGGRRPPR    WRS R +
Sbjct: 1   MAQSYES-QLQDEAQPLLLSGHRRPLRRWIHLRRKKLSTARLGGRRPPRAAVIWRSIRKV 60

Query: 61  QIRKWLMRVRCTCLLKKLNPLFGKGTAGAVVAFQKRILMEISLAVPVLGAS 112
           ++RKWLM+VRC C +KK+N LF K   G    F KRILMEIS AVPVLGAS
Sbjct: 61  RMRKWLMKVRCDCKVKKMNELFDKDN-GGFNGFLKRILMEISSAVPVLGAS 109

BLAST of MS009600 vs. NCBI nr
Match: KAA0059393.1 (hypothetical protein E6C27_scaffold242G001190 [Cucumis melo var. makuwa] >TYK03934.1 hypothetical protein E5676_scaffold347G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-19
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDI 60
           M  SY+ E  QDEA+SLL SG+RRP RR I LRR++LPTARLGGRRPPR VA WRS ++I
Sbjct: 1   MRESYKLE-AQDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTVAIWRSIKEI 60

Query: 61  QIRKW----LMRVRCTCLLKKLNPLFGKGTAGAVVAFQKRILMEISLAVPVLGASL 113
           ++RKW     M+VRC            K  AG   AF K+IL+EISLA+P+LG SL
Sbjct: 61  KMRKWAAMMTMKVRC------------KDIAG-FNAFLKKILLEISLAIPLLGVSL 102

BLAST of MS009600 vs. NCBI nr
Match: KAE8646502.1 (hypothetical protein Csa_015773 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-17
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 0

Query: 4   SYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDIQIR 63
           SYE E  +DEA+SLL SG+RRP RR I LRR++LPTARLGGRRPPR  A WRS ++I++R
Sbjct: 5   SYELE-AEDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTAAIWRSIKEIKMR 64

Query: 64  KWLM----RVRCTCLLKKLNPLFGKGTAGAVVAFQKRILMEISLAVPVLGASL 113
           KW M    +VRC  +              +  AF ++IL+EISLA+P+LG  L
Sbjct: 65  KWAMTMTNKVRCKDI-------------ASFNAFLRKILLEISLAIPLLGDGL 103

BLAST of MS009600 vs. ExPASy TrEMBL
Match: A0A5A7UTZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001310 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.3e-19
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 1   MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDI 60
           M  SY+ E  QDEA+SLL SG+RRP RR I LRR++LPTARLGGRRPPR VA WRS ++I
Sbjct: 1   MRESYKLE-AQDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTVAIWRSIKEI 60

Query: 61  QIRKW----LMRVRCTCLLKKLNPLFGKGTAGAVVAFQKRILMEISLAVPVLGASL 113
           ++RKW     M+VRC            K  AG   AF K+IL+EISLA+P+LG SL
Sbjct: 61  KMRKWAAMMTMKVRC------------KDIAG-FNAFLKKILLEISLAIPLLGVSL 102

BLAST of MS009600 vs. ExPASy TrEMBL
Match: A0A0A0KCH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448920 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 0

Query: 4   SYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDIQIR 63
           SYE E  +DEA+SLL SG+RRP RR I LRR++LPTARLGGRRPPR  A WRS ++I++R
Sbjct: 5   SYELE-AEDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTAAIWRSIKEIKMR 64

Query: 64  KWLM----RVRCTCLLKKLNPLFGKGTAGAVVAFQKRILMEISLAVPVLGASL 113
           KW M    +VRC  +              +  AF ++IL+EISLA+P+LG SL
Sbjct: 65  KWAMTMTNKVRCKDI-------------ASFNAFLRKILLEISLAIPLLGVSL 103

BLAST of MS009600 vs. ExPASy TrEMBL
Match: A0A5N6QI76 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003523 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 1   MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDI 60
           MA   +   P      ++P+      R +I LRRR+LPT RLGG++P R     R FR +
Sbjct: 1   MAPDQQPHHPNPTETPIIPAVRGPTTRLQISLRRRKLPTVRLGGKKPRRGFTLARVFRRL 60

Query: 61  QIRKWLMRVRCTCLLKKL-----NPLFGKGTAGAVV-AFQKRILMEISLAVPVLGAS 112
           ++R WL +++ TC+LKKL     N +     AGA +  F +R+LME SLAVPVLG S
Sbjct: 61  RLR-WL-KLQYTCMLKKLREYYRNLVKDMVDAGATLETFHQRVLMEASLAVPVLGVS 115

BLAST of MS009600 vs. ExPASy TrEMBL
Match: A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-08
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 0

Query: 1   MALSYESEQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDI 60
           M   YE E+ Q  A   L  G RR  RR +  RRRR+P ARLGG+R  R+VA+ R  R I
Sbjct: 1   MGQPYEPEEGQPGAG--LRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKI 60

Query: 61  QIRKWLMRVRCTCLLKKLNPLFGK-----GTAGAVV-AFQKRILMEISLAVPVLGASL 113
           ++R W ++++C  ++KK+   + +       AGA   ++Q R+L+E S A+P+LG SL
Sbjct: 61  RLR-W-VKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSL 114

BLAST of MS009600 vs. ExPASy TrEMBL
Match: A0A6P3Z3H6 (uncharacterized protein LOC107406823 OS=Ziziphus jujuba OX=326968 GN=LOC107406823 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 0

Query: 8   EQPQDEAQSLLPSGHRRPYRRRIHLRRRRLPTARLGGRRPPRVVAFWRSFRDIQIRKWLM 67
           +Q   +    L + +RR  RR I LRRRR+P  RLGG+RP RVV      R I++R WL 
Sbjct: 4   DQELHDQNLALTNPNRRVVRRTIPLRRRRVPAIRLGGKRPGRVVGLIGILRRIKVR-WL- 63

Query: 68  RVRCTCLLKKLNPLFG------KGTAGAVVAFQKRILMEISLAVPVLGAS 112
           ++R   +L+KL   +       K  +  + AFQ+R+L+E S AVPV+G S
Sbjct: 64  KLRYLYMLRKLREYYRKTVKELKEASATIEAFQQRVLLETSFAVPVMGVS 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6593556.11.7e-3067.50hypothetical protein SDJN03_13032, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013982.15.5e-2968.47hypothetical protein SDJN02_24152, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575440.15.5e-2968.47hypothetical protein SDJN03_26079, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0059393.16.7e-1956.90hypothetical protein E6C27_scaffold242G001190 [Cucumis melo var. makuwa] >TYK039... [more]
KAE8646502.18.2e-1752.21hypothetical protein Csa_015773 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UTZ43.3e-1956.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCH48.0e-1853.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448920 PE=4 SV=1[more]
A0A5N6QI761.5e-0841.88Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_003523 PE=4 SV=1[more]
A0A6J1GVZ82.6e-0840.68uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A6P3Z3H69.8e-0840.91uncharacterized protein LOC107406823 OS=Ziziphus jujuba OX=326968 GN=LOC10740682... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009600.1MS009600.1mRNA