MS009538 (gene) Bitter gourd (TR) v1

Overview


Name	MS009538
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cryptdin protein-related
Location	scaffold813: 2093271 .. 2094257 (-)
RNA-Seq Expression	MS009538
Synteny	MS009538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCCCTAAATTCTCTCTGAGCTCCATTTTCGTGACGGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGATCTCCACCGCCGCTGCCACTCGTTTGCCTCTCCAAGGTAAAAAATTTATTAAAATCACTGTTACACCCAAAAACTTTGGTTTCCGAGTAAAATATTAATTTGAGATCCAACAAATTGATATAAAAGAGGAAAGAAATCAAGGAGAGTAGAACTAGAAATTTTCTCAGGAGGGGCATGTTTAAATACTATTTTAATTACTGTTTTAATTTATTATCGTCTTTGTACTTTTAAGATGTCCAATTTCATCTTTTATTTTCAATTTTTTTTTTCATTTGAGTTCCTATATACTTTCAAAATACTCATACTCATTTTGGTTTTTATACTTTTGAAAAGGAACTATTTTGATCTTTGTACTTCATCTTTTATCTCATTTTTTAATCACGAATATTTCAACGTGACACTAATATTCAATAAATTTATTAAAATGTTCGAATAACTTTAGATTAAATGGTCTCCATTGTGTATAAATTTTGTGTTGAAATATTTTGCAAAACTAAAATGATCCCTTCTTTAAAATTAGGACCAAAATTTATATTTTTAAAGTAGAAGGATTAAAATGAACAAAAGTTGAAAATACAAATATCAAAAGTTTTGAAAGTAAAAGAAGTTTAAACCATAACTAAAAGTACAGAAATCGAAATAGTCTTTTCGACTAGATAAATGATATTGCATACCTTTCACTTACTAGTGAAGTTTAAGGGATATTATCATATTAGTTTAGAGCACATTTAAATTTAATCGTTTATGTGTTTAAGAAATTTTACGATTAAACTTTTGGGTTCGGTGATGATGCAGTGAGAAGGCCACCGATATGCCCGGCCTGTGTGTGCTGCAAGCCGCCTCCGCCGGGCTCTTGCTGCAAGCAATGCTGTGCTACACCTATTGAAACTTCGTCTCAAAATGGATCGCCA

mRNA sequence

ATGGCTGCCCCTAAATTCTCTCTGAGCTCCATTTTCGTGACGGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGATCTCCACCGCCGCTGCCACTCGTTTGCCTCTCCAAGTGAGAAGGCCACCGATATGCCCGGCCTGTGTGTGCTGCAAGCCGCCTCCGCCGGGCTCTTGCTGCAAGCAATGCTGTGCTACACCTATTGAAACTTCGTCTCAAAATGGATCGCCA

Coding sequence (CDS)

ATGGCTGCCCCTAAATTCTCTCTGAGCTCCATTTTCGTGACGGTTCTCGTCTTCGCCATGGTTCTCTCTCCCATGATCTCCACCGCCGCTGCCACTCGTTTGCCTCTCCAAGTGAGAAGGCCACCGATATGCCCGGCCTGTGTGTGCTGCAAGCCGCCTCCGCCGGGCTCTTGCTGCAAGCAATGCTGTGCTACACCTATTGAAACTTCGTCTCAAAATGGATCGCCA

Protein sequence

MAAPKFSLSSIFVTVLVFAMVLSPMISTAAATRLPLQVRRPPICPACVCCKPPPPGSCCKQCCATPIETSSQNGSP

Homology

[Close]

BLAST of MS009538 vs. NCBI nr
Match: XP_022144128.1 (uncharacterized protein LOC111013890 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPMISTAAATRLPLQVRRPPICPACVCCKPPPPGSCCK 60
          MAAPKFSLSSIFVTVLVF MVLSPMISTAAATRLPLQVRRPPICPACVCCKPPPPGSCCK
Sbjct: 5  MAAPKFSLSSIFVTVLVFTMVLSPMISTAAATRLPLQVRRPPICPACVCCKPPPPGSCCK 64

Query: 61 QCCATPIETSSQNGSP 77
          QCCATPIETSSQNGSP
Sbjct: 65 QCCATPIETSSQNGSP 80

[Close]

BLAST of MS009538 vs. NCBI nr
Match: KGN45568.1 (hypothetical protein Csa_016454 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 4.5e-19
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPMIS-TAAATRLPL-QVRRPPICPACVCCKPPPPGSC 60
          MA PK  L+S+F+TVLVFAMVLSPM + TA+ATR+ L Q+ RPPICPACVCC+PPP GSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CKQCCATPIETSSQNGSP 77
          C+ CCA+PI+TSSQNGSP
Sbjct: 61 CR-CCASPIQTSSQNGSP 77

[Close]

BLAST of MS009538 vs. NCBI nr
Match: XP_038896231.1 (uncharacterized protein LOC120084509 [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-17
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPM-ISTAAATRLPL-QVRRPPICPACVCCKPPPPGSC 60
          MA+ KFSL+S+ +TVLVF MVLSPM I TA ATR+ L Q+ RPPICPACVCC+P P GSC
Sbjct: 1  MASAKFSLTSVLMTVLVFTMVLSPMTIPTANATRVLLQQINRPPICPACVCCEPAPAGSC 60

Query: 61 CKQCCATPIETSSQNGSP 77
          C+ CCA+PI+TSSQNGSP
Sbjct: 61 CR-CCASPIQTSSQNGSP 77

[Close]

BLAST of MS009538 vs. NCBI nr
Match: XP_022992462.1 (uncharacterized protein LOC111488758 [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-17
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 6  FSLSSIFVTVLVFAMVLSPM-ISTAAATRLPL-QVRRPPICPACVCCKPPPPGSCCKQCC 65
          FS  SIFVTVLVFAMVLSPM ISTA ATR  L QV RPPICPACVCC+P P GSCC+ CC
Sbjct: 7  FSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCR-CC 66

Query: 66 ATPIETSSQNGSP 77
          ATPI+TSSQNGSP
Sbjct: 67 ATPIQTSSQNGSP 78

[Close]

BLAST of MS009538 vs. NCBI nr
Match: KAA0059464.1 (hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK03859.1 hypothetical protein E5676_scaffold347G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 4.2e-17
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPM-ISTAAATRLPL-QVRRPPICPACVCCKPPPPGSC 60
          MA PK  ++S+F+TVLVFAM+LSPM I TA ATR+ L Q+ RPPICPACVCC+P P GSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CKQCCATPIETSSQNGSP 77
          C+ CCA+PI+TSSQNGSP
Sbjct: 61 CR-CCASPIQTSSQNGSP 77

[Close]

BLAST of MS009538 vs. ExPASy TrEMBL
Match: A0A6J1CSH3 (uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013890 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPMISTAAATRLPLQVRRPPICPACVCCKPPPPGSCCK 60
          MAAPKFSLSSIFVTVLVF MVLSPMISTAAATRLPLQVRRPPICPACVCCKPPPPGSCCK
Sbjct: 5  MAAPKFSLSSIFVTVLVFTMVLSPMISTAAATRLPLQVRRPPICPACVCCKPPPPGSCCK 64

Query: 61 QCCATPIETSSQNGSP 77
          QCCATPIETSSQNGSP
Sbjct: 65 QCCATPIETSSQNGSP 80

[Close]

BLAST of MS009538 vs. ExPASy TrEMBL
Match: A0A0A0K7Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPMIS-TAAATRLPL-QVRRPPICPACVCCKPPPPGSC 60
          MA PK  L+S+F+TVLVFAMVLSPM + TA+ATR+ L Q+ RPPICPACVCC+PPP GSC
Sbjct: 1  MAIPKLPLTSVFITVLVFAMVLSPMTTPTASATRVLLQQINRPPICPACVCCEPPPAGSC 60

Query: 61 CKQCCATPIETSSQNGSP 77
          C+ CCA+PI+TSSQNGSP
Sbjct: 61 CR-CCASPIQTSSQNGSP 77

[Close]

BLAST of MS009538 vs. ExPASy TrEMBL
Match: A0A6J1JPW7 (uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-17
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 6  FSLSSIFVTVLVFAMVLSPM-ISTAAATRLPL-QVRRPPICPACVCCKPPPPGSCCKQCC 65
          FS  SIFVTVLVFAMVLSPM ISTA ATR  L QV RPPICPACVCC+P P GSCC+ CC
Sbjct: 7  FSPISIFVTVLVFAMVLSPMTISTANATRALLQQVNRPPICPACVCCEPAPAGSCCR-CC 66

Query: 66 ATPIETSSQNGSP 77
          ATPI+TSSQNGSP
Sbjct: 67 ATPIQTSSQNGSP 78

[Close]

BLAST of MS009538 vs. ExPASy TrEMBL
Match: A0A5A7UWJ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00530 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPM-ISTAAATRLPL-QVRRPPICPACVCCKPPPPGSC 60
          MA PK  ++S+F+TVLVFAM+LSPM I TA ATR+ L Q+ RPPICPACVCC+P P GSC
Sbjct: 1  MAIPKSPITSVFMTVLVFAMLLSPMTIPTATATRVLLQQLNRPPICPACVCCEPAPAGSC 60

Query: 61 CKQCCATPIETSSQNGSP 77
          C+ CCA+PI+TSSQNGSP
Sbjct: 61 CR-CCASPIQTSSQNGSP 77

[Close]

BLAST of MS009538 vs. ExPASy TrEMBL
Match: A0A6J1GR88 (uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC111456398 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 5  KFSLSSIFVTVLVFAMVLSP-MISTAAATRLPL-QVRRPPICPACVCCKPPPPGSCCKQC 64
          KF+ +SIFVTVLVFAMVLSP  IST  ATR+ L QV RPPICPACVCC+P P GSCC+ C
Sbjct: 6  KFTPTSIFVTVLVFAMVLSPTTISTVNATRVLLQQVNRPPICPACVCCEPAPAGSCCR-C 65

Query: 65 CATPIETSSQNGSP 77
          CATPI+TSSQ+GSP
Sbjct: 66 CATPIQTSSQSGSP 78

[Close]

BLAST of MS009538 vs. TAIR 10
Match: AT1G51920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 10 SIFVTVLVFAMVLSPMISTAAATRLPLQ--VRRPPICPACVCCKPPPPGSCCKQCCATPI 69
          SIF+ + V  ++L   +S + ATR+P      R PICPACVCC+P P GSCC+ CCA+PI
Sbjct: 9  SIFLKLFVLFLLLVLPLSQSNATRIPRAPISSRRPICPACVCCEPAPLGSCCR-CCASPI 68

Query: 70 ETSSQNGS 76
           T + + S
Sbjct: 69 VTQTHHHS 75

[Close]

BLAST of MS009538 vs. TAIR 10
Match: AT1G51915.1 (cryptdin protein-related )

HSP 1 Score: 40.0 bits (92), Expect = 9.7e-04
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 1  MAAPKFSLSSIFVTVLVFAMVLSPMISTAAATRLPL-----QVRRPPICPACVCCKPPPP 60
          MA  +F  S++ ++VLV A+VLSP++    ATR  L      +RR  +CP+CVCC P P 
Sbjct: 1  MATERF--STMLISVLVLALVLSPIL-PCQATRAHLDAETRMLRR--VCPSCVCCAPAPR 60

Query: 61 GSCCKQCC 64
          G+CC   C
Sbjct: 61 GACCPCRC 63

The following BLAST results are available for this feature:

BLAST of MS009538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144128.1	6.0e-32	98.68	uncharacterized protein LOC111013890 [Momordica charantia]	[more]
KGN45568.1	4.5e-19	73.08	hypothetical protein Csa_016454 [Cucumis sativus]	[more]
XP_038896231.1	2.5e-17	71.79	uncharacterized protein LOC120084509 [Benincasa hispida]	[more]
XP_022992462.1	3.2e-17	80.82	uncharacterized protein LOC111488758 [Cucurbita maxima]	[more]
KAA0059464.1	4.2e-17	70.51	hypothetical protein E6C27_scaffold242G001940 [Cucumis melo var. makuwa] >TYK038...	[more]

BLAST of MS009538 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSH3	2.9e-32	98.68	uncharacterized protein LOC111013890 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0K7Y9	2.2e-19	73.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452230 PE=4 SV=1	[more]
A0A6J1JPW7	1.6e-17	80.82	uncharacterized protein LOC111488758 OS=Cucurbita maxima OX=3661 GN=LOC111488758...	[more]
A0A5A7UWJ7	2.0e-17	70.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1GR88	1.3e-16	75.68	uncharacterized protein LOC111456398 OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]

BLAST of MS009538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51920.1	1.1e-07	48.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51915.1	9.7e-04	44.12	cryptdin protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36328:SF1	TRANSMEMBRANE PROTEIN	coord: 7..76
None	No IPR available	PANTHER	PTHR36328	TRANSMEMBRANE PROTEIN	coord: 7..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009538.1	MS009538.1	mRNA