MS009511 (gene) Bitter gourd (TR) v1

Overview


Name	MS009511
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold813: 1819206 .. 1819355 (-)
RNA-Seq Expression	MS009511
Synteny	MS009511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGGATGGCCGAGTCGCCTTTGATGCTAAGCGCGGCCGCATCGTGCGCACGCGCCGCCATTTCGGGCGTCGGGAACGTGCCGAGCCAAATGCGGGACTTCTTCCGCGGCTGCCGGATTTCCGACACCCATTTTCCCCAGCTTCTCTTG

mRNA sequence

TTGAGGATGGCCGAGTCGCCTTTGATGCTAAGCGCGGCCGCATCGTGCGCACGCGCCGCCATTTCGGGCGTCGGGAACGTGCCGAGCCAAATGCGGGACTTCTTCCGCGGCTGCCGGATTTCCGACACCCATTTTCCCCAGCTTCTCTTG

Coding sequence (CDS)

TTGAGGATGGCCGAGTCGCCTTTGATGCTAAGCGCGGCCGCATCGTGCGCACGCGCCGCCATTTCGGGCGTCGGGAACGTGCCGAGCCAAATGCGGGACTTCTTCCGCGGCTGCCGGATTTCCGACACCCATTTTCCCCAGCTTCTCTTG

Protein sequence

LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL

Homology

[Close]

BLAST of MS009511 vs. NCBI nr
Match: PPD82210.1 (hypothetical protein GOBAR_DD20833 [Gossypium barbadense])

HSP 1 Score: 82.8 bits (203), Expect = 9.2e-13
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL 51
          LRMAE PL+L AA SCARAAISGVG VPSQMRDF RG RISDTH PQLL+
Sbjct: 47 LRMAELPLILKAATSCARAAISGVGKVPSQMRDFLRGSRISDTHLPQLLI 96

[Close]

BLAST of MS009511 vs. NCBI nr
Match: RDX90130.1 (hypothetical protein CR513_28042, partial [Mucuna pruriens])

HSP 1 Score: 79.7 bits (195), Expect = 7.8e-12
Identity = 40/47 (85.11%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQ 48
           LRMA  P MLSAA SCA AAISGVGNVPS MRDFFRG RISDTHFPQ
Sbjct: 76  LRMALLPFMLSAATSCALAAISGVGNVPSHMRDFFRGSRISDTHFPQ 122

[Close]

BLAST of MS009511 vs. NCBI nr
Match: VVV77779.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 77.0 bits (188), Expect = 5.1e-11
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 2   RMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL 51
           R+A+ PL++SAA SCARAAISGVGNVPSQ+ DF RG RISDTH PQLL+
Sbjct: 68  RIADWPLIVSAATSCARAAISGVGNVPSQILDFLRGSRISDTHLPQLLI 116

[Close]

BLAST of MS009511 vs. NCBI nr
Match: EYU29278.1 (hypothetical protein MIMGU_mgv1a014180mg [Erythranthe guttata])

HSP 1 Score: 76.3 bits (186), Expect = 8.6e-11
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL 51
           LR+AE+PLMLSAA S ARAAISGVG VPS +RDF RG RIS+TH PQLL+
Sbjct: 77  LRVAEAPLMLSAATSWARAAISGVGKVPSHIRDFLRGSRISETHLPQLLI 126

[Close]

BLAST of MS009511 vs. NCBI nr
Match: KYP54164.1 (hypothetical protein KK1_000338 [Cajanus cajan])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1  LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQL 49
          LRMAE PLM+ AA S ARAAISGV  VPSQMRDF RG RISDTHFPQL
Sbjct: 20 LRMAEWPLMVRAATSWARAAISGVAKVPSQMRDFLRGSRISDTHFPQL 67

[Close]

BLAST of MS009511 vs. ExPASy TrEMBL
Match: A0A7C9DWE3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1   LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL 51
           LRMAESPLML+AA SCARAAISG+G VPSQMRDFFRG RISDTHFP  L+
Sbjct: 51  LRMAESPLMLNAATSCARAAISGLGKVPSQMRDFFRGSRISDTHFPHALI 100

[Close]

BLAST of MS009511 vs. ExPASy TrEMBL
Match: A0A371GI01 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28042 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12
Identity = 40/47 (85.11%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQ 48
           LRMA  P MLSAA SCA AAISGVGNVPS MRDFFRG RISDTHFPQ
Sbjct: 76  LRMALLPFMLSAATSCALAAISGVGNVPSHMRDFFRGSRISDTHFPQ 122

[Close]

BLAST of MS009511 vs. ExPASy TrEMBL
Match: A0A1J3K9H9 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR23491_c0_g1_i1_g.68307 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1   LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL 51
           LRMAE PLML AA SCAR AIS VG VPSQ+ DFFRG RISDTHFPQLL+
Sbjct: 220 LRMAEVPLMLIAATSCARIAISAVGKVPSQILDFFRGSRISDTHFPQLLI 269

[Close]

BLAST of MS009511 vs. ExPASy TrEMBL
Match: A0A0A0L8D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455120 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.9e-12
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  LRMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL 51
          + +AESPL+LSAA SCARAAIS V  VPSQ+RDFF GCRISDTH PQLLL
Sbjct: 1  MALAESPLILSAATSCARAAISAVVKVPSQIRDFFLGCRISDTHLPQLLL 50

[Close]

BLAST of MS009511 vs. ExPASy TrEMBL
Match: A0A5K0YK11 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS9195 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 2   RMAESPLMLSAAASCARAAISGVGNVPSQMRDFFRGCRISDTHFPQLLL 51
           R+A+ PL++SAA SCARAAISGVGNVPSQ+ DF RG RISDTH PQLL+
Sbjct: 68  RIADWPLIVSAATSCARAAISGVGNVPSQILDFLRGSRISDTHLPQLLI 116

The following BLAST results are available for this feature:

BLAST of MS009511 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD82210.1	9.2e-13	82.00	hypothetical protein GOBAR_DD20833 [Gossypium barbadense]	[more]
RDX90130.1	7.8e-12	85.11	hypothetical protein CR513_28042, partial [Mucuna pruriens]	[more]
VVV77779.1	5.1e-11	75.51	unnamed protein product, partial [Nymphaea colorata]	[more]
EYU29278.1	8.6e-11	76.00	hypothetical protein MIMGU_mgv1a014180mg [Erythranthe guttata]	[more]
KYP54164.1	1.1e-10	81.25	hypothetical protein KK1_000338 [Cajanus cajan]	[more]

BLAST of MS009511 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C9DWE3	3.1e-14	84.00	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A371GI01	3.8e-12	85.11	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28042 P...	[more]
A0A1J3K9H9	3.8e-12	80.00	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR234...	[more]
A0A0A0L8D6	4.9e-12	78.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G455120 PE=4 SV=1	[more]
A0A5K0YK11	2.4e-11	75.51	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS91...	[more]

BLAST of MS009511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009511.1	MS009511.1	mRNA