MS009500 (gene) Bitter gourd (TR) v1

Overview


Name	MS009500
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Location	scaffold813: 1764597 .. 1764719 (-)
RNA-Seq Expression	MS009500
Synteny	MS009500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAGAAGCCATTGAAGGACCTGAGGAGCAGAGGGTTATGTTTGGTACCAGTTTCATGCACACAGCTTGTTGGAGGAGACAACAATGGAGCTGCCTACTGGGCTCCTGCCTACAGCACTGGC

mRNA sequence

CAAGAGAAGCCATTGAAGGACCTGAGGAGCAGAGGGTTATGTTTGGTACCAGTTTCATGCACACAGCTTGTTGGAGGAGACAACAATGGAGCTGCCTACTGGGCTCCTGCCTACAGCACTGGC

Coding sequence (CDS)

CAAGAGAAGCCATTGAAGGACCTGAGGAGCAGAGGGTTATGTTTGGTACCAGTTTCATGCACACAGCTTGTTGGAGGAGACAACAATGGAGCTGCCTACTGGGCTCCTGCCTACAGCACTGGC

Protein sequence

QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG

Homology

[Close]

BLAST of MS009500 vs. NCBI nr
Match: XP_022146101.1 (transcription factor bHLH68-like [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 5.2e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 3   KPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           KPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG
Sbjct: 263 KPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 301

[Close]

BLAST of MS009500 vs. NCBI nr
Match: XP_022964017.1 (transcription factor bHLH68-like [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           +EK +K+LRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY  G
Sbjct: 225 EEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNG 265

[Close]

BLAST of MS009500 vs. NCBI nr
Match: XP_023000383.1 (transcription factor bHLH68-like [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           +EK +K+LRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY  G
Sbjct: 226 EEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNG 266

[Close]

BLAST of MS009500 vs. NCBI nr
Match: KAG7025815.1 (Transcription factor bHLH68 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           +EK +K+LRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY  G
Sbjct: 230 EEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNG 270

[Close]

BLAST of MS009500 vs. NCBI nr
Match: XP_023515291.1 (transcription factor bHLH68-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 3.7e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           +EK +K+LRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY  G
Sbjct: 222 EEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNG 262

[Close]

BLAST of MS009500 vs. ExPASy Swiss-Prot
Match: Q7XHI5 (Transcription factor bHLH133 OS=Arabidopsis thaliana OX=3702 GN=BHLH133 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 2   EKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYST 41
           E+P+KDLRSRGLCLVP+SCT  VG D NGA YWAPA+ T
Sbjct: 322 EEPMKDLRSRGLCLVPISCTLQVGSD-NGADYWAPAFGT 359

[Close]

BLAST of MS009500 vs. ExPASy Swiss-Prot
Match: Q8S3D1 (Transcription factor bHLH68 OS=Arabidopsis thaliana OX=3702 GN=BHLH68 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 9.0e-09
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 2   EKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPA 38
           E+P KDLRSRGLCLVP+SCT  VG D NGA YWAPA
Sbjct: 366 EEPKKDLRSRGLCLVPISCTLQVGSD-NGADYWAPA 400

[Close]

BLAST of MS009500 vs. ExPASy Swiss-Prot
Match: Q9FYJ6 (Transcription factor bHLH111 OS=Arabidopsis thaliana OX=3702 GN=BHLH111 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.8e-04
Identity = 19/32 (59.38%), Postives = 22/32 (68.75%), Query Frame = 0


Query: 7   DLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY 39
           DLRSRGLCLVP+S T +   DN+   YW P Y
Sbjct: 282 DLRSRGLCLVPISYTPIAYRDNSATDYWNPTY 313

[Close]

BLAST of MS009500 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.0e-04
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 6   KDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPA 38
           KDLRSRGLCLVPVS T  V  ++NGA +W+PA
Sbjct: 226 KDLRSRGLCLVPVSSTVHV-ENSNGADFWSPA 256

[Close]

BLAST of MS009500 vs. ExPASy TrEMBL
Match: A0A6J1CYC1 (transcription factor bHLH68-like OS=Momordica charantia OX=3673 GN=LOC111015393 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 3   KPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           KPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG
Sbjct: 263 KPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 301

[Close]

BLAST of MS009500 vs. ExPASy TrEMBL
Match: A0A6J1KMG6 (transcription factor bHLH68-like OS=Cucurbita maxima OX=3661 GN=LOC111494639 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           +EK +K+LRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY  G
Sbjct: 226 EEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNG 266

[Close]

BLAST of MS009500 vs. ExPASy TrEMBL
Match: A0A6J1HGP4 (transcription factor bHLH68-like OS=Cucurbita moschata OX=3662 GN=LOC111464167 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           +EK +K+LRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY  G
Sbjct: 225 EEKAVKELRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYGNG 265

[Close]

BLAST of MS009500 vs. ExPASy TrEMBL
Match: A0A6P6FYS0 (transcription factor bHLH68-like OS=Ziziphus jujuba OX=326968 GN=LOC107404296 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-08
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 6   KDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           KDLRSRGLCLVPVSCTQ VG + NGA YWAPAY +G
Sbjct: 256 KDLRSRGLCLVPVSCTQNVGSEINGADYWAPAYGSG 291

[Close]

BLAST of MS009500 vs. ExPASy TrEMBL
Match: A0A1R3G7H5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28111 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1   QEKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYSTG 42
           Q+KP KDLRSRGLCLVPVSCTQ VG D NGA YWAPA+ +G
Sbjct: 808 QDKP-KDLRSRGLCLVPVSCTQQVGSD-NGADYWAPAFGSG 846

[Close]

BLAST of MS009500 vs. TAIR 10
Match: AT2G20100.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-11
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 2   EKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAYST 41
           E+P+KDLRSRGLCLVP+SCT  VG D NGA YWAPA+ T
Sbjct: 322 EEPMKDLRSRGLCLVPISCTLQVGSD-NGADYWAPAFGT 359

[Close]

BLAST of MS009500 vs. TAIR 10
Match: AT4G29100.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 6.4e-10
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 2   EKPLKDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPA 38
           E+P KDLRSRGLCLVP+SCT  VG D NGA YWAPA
Sbjct: 366 EEPKKDLRSRGLCLVPISCTLQVGSD-NGADYWAPA 400

[Close]

BLAST of MS009500 vs. TAIR 10
Match: AT1G31050.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.2e-05
Identity = 19/32 (59.38%), Postives = 22/32 (68.75%), Query Frame = 0


Query: 7   DLRSRGLCLVPVSCTQLVGGDNNGAAYWAPAY 39
           DLRSRGLCLVP+S T +   DN+   YW P Y
Sbjct: 397 DLRSRGLCLVPISYTPIAYRDNSATDYWNPTY 428

[Close]

BLAST of MS009500 vs. TAIR 10
Match: AT3G19500.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.1e-05
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 6   KDLRSRGLCLVPVSCTQLVGGDNNGAAYWAPA 38
           KDLRSRGLCLVPVS T  V  ++NGA +W+PA
Sbjct: 226 KDLRSRGLCLVPVSSTVHV-ENSNGADFWSPA 256

[Close]

BLAST of MS009500 vs. TAIR 10
Match: AT1G27660.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 3.1e-04
Identity = 19/39 (48.72%), Postives = 23/39 (58.97%), Query Frame = 0


Query: 2   EKPLKDLRSRGLCLVPVSCTQLVGGDNN------GAAYW 35
           E+  +DLRSRGLCLVP+SC   V GD        G  +W
Sbjct: 405 EEETRDLRSRGLCLVPLSCMTYVTGDGGDGGGGVGTGFW 443

The following BLAST results are available for this feature:

BLAST of MS009500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146101.1	5.2e-14	100.00	transcription factor bHLH68-like [Momordica charantia]	[more]
XP_022964017.1	3.7e-12	85.37	transcription factor bHLH68-like [Cucurbita moschata]	[more]
XP_023000383.1	3.7e-12	85.37	transcription factor bHLH68-like [Cucurbita maxima]	[more]
KAG7025815.1	3.7e-12	85.37	Transcription factor bHLH68 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023515291.1	3.7e-12	85.37	transcription factor bHLH68-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS009500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XHI5	3.6e-10	74.36	Transcription factor bHLH133 OS=Arabidopsis thaliana OX=3702 GN=BHLH133 PE=1 SV=...	[more]
Q8S3D1	9.0e-09	77.78	Transcription factor bHLH68 OS=Arabidopsis thaliana OX=3702 GN=BHLH68 PE=1 SV=2	[more]
Q9FYJ6	1.8e-04	59.38	Transcription factor bHLH111 OS=Arabidopsis thaliana OX=3702 GN=BHLH111 PE=2 SV=...	[more]
Q9LT67	3.0e-04	68.75	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]

BLAST of MS009500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYC1	2.5e-14	100.00	transcription factor bHLH68-like OS=Momordica charantia OX=3673 GN=LOC111015393 ...	[more]
A0A6J1KMG6	1.8e-12	85.37	transcription factor bHLH68-like OS=Cucurbita maxima OX=3661 GN=LOC111494639 PE=...	[more]
A0A6J1HGP4	1.8e-12	85.37	transcription factor bHLH68-like OS=Cucurbita moschata OX=3662 GN=LOC111464167 P...	[more]
A0A6P6FYS0	7.9e-08	80.56	transcription factor bHLH68-like OS=Ziziphus jujuba OX=326968 GN=LOC107404296 PE...	[more]
A0A1R3G7H5	1.0e-07	78.05	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28111 PE=3 ...	[more]

BLAST of MS009500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20100.1	2.6e-11	74.36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G29100.1	6.4e-10	77.78	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G31050.1	1.2e-05	59.38	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G19500.1	2.1e-05	68.75	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G27660.1	3.1e-04	48.72	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009500.1	MS009500.1	mRNA