MS009493 (gene) Bitter gourd (TR) v1

Overview


Name	MS009493
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein CURVATURE THYLAKOID 1C, chloroplastic
Location	scaffold813: 1713981 .. 1715869 (+)
RNA-Seq Expression	MS009493
Synteny	MS009493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTGTTGCTAGTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCTCAGAAGCTCACTGTTTTTCCCATCGCAAGTAAGTTTATTCTAATATTGAGATCCATTTAGTTTAATTCCGCGTTGAATATTGATGTTCGTTCGATCATGTTTATTGTGCTGCATTCCTCTATGTTTGTTTGTGTTTGTTTGAATTTTGAACTGAATGAATGGCGCATACTTGGTAGGTGGAAGGATTAGGTTACTCCGATGCGACGCAGAAACAATTTCCATTAGGAGTTTAAGTCTTAATGTGTAGTTTGTAGTAGCCGTAGGAGTAGAACGACAAGGGTTCCCTAGGGTTATGTTCCTCTGGTGGAAAATGGCGCTTGTTACTCTTTGGTCAAAATGGCGCTTGTTACTCTTTGGTCTTTACATTTCCATGTCTAACATGGCCTTGAGATTGTGGAAGATGGAGAGGGTTTCATTTCATAGGTTTAGAACCTTAAAATCTTCTAGTTTAGAGAGTTTTAACTGTTGAAACCGGTCTGCATAATTGATTTTTGATATTGAAGCTTTGAACATCAGTATGAAATTGGAATTTCTGTAGTCCTGGTGGATAATCCTCATCAAACTCCAGAAGGTTCACATTCCTTGCATCATTTTTTCTTAGAAACAGGCCTTGCTACTGCCTTCTAGAACTTGAATTTATTTTTCAGGATTATAAGAACCAGCATTGCAATTTTCTATTCATTCAACAAAAGGGGTGGTCAATGAACTTCACATGTAGTAGCATAGACAATTTGGGACTGCTAGTTTCTTTCCATACATTCACATTCTCAATATACCACACAACTTACTCGCACAGTTCTAGTGATTGACAATTTTTTTAGGTCTCGTGTGCCCTTGTGATAACTAATATTATAGCAGATTACTGTCTATTTCAATAGGAGTTGGAGTCTTCTTCACTGCCTCTAGCAGTTGGGACCCTTTAGGTGGCTGCAACTCTGAATTGTATGGAAATTTGCATCTAAAATGGTTAAATTTTCTTTATATGAATATTTCAAAGTTGAACATTAAACTGCAAAACGTAGCTCCCTGCTTCCTAGCCATCTATTGAAGATAATGTGATGGTCCGGCACCCCTGTTTGATTGTTTGCAACTGATTGAAGTTCTCGTACCTTGTTCACCATACTACTTTTTATTAATAAATAATTTTTCGAAATTGCAGAGAAACGTTCTGCGACTGTTGTTGTAAAGGCTACTGGAGACAGCTCCGATTCTTCTTCCCTTAGTATTATTAAGTCTGTTCAAAATATTGTAAGCTCTTTATTTCTGTCCTTTTTTTATATAAGTTATATATATATAGAGATCATATTAATTACAACTTTTTAAATTTTTTAGTTCTAAAATTTTCCTTTCTTCATGGATGTTGAAGGTTTGCTTCGTTTGAAATTTATAAGCGATGTTTGATTTTTGAGGAAAGAATGCCAGAAAGTAAAGGACGACACTTTTGTACAATTAGTAAATTTCTCATTCTGTGGATGGCTTATTGGTACTTACATTTTTCTGGTTTAACTTGGGATATAGTGGGATCAACCTGAAGATAGGCTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTTTATGGACAGCAACAAACTTTGTTACGGTAATCTAAAAACAATGATCCTTTTGGATCAGAATTTTGAGAGATGAGAAAGTCACACCGCATCTGGATTTTTTGACCGAGTCTGTTATTTCTCATGTTTTGTTTGTTCTTCAACACATAACCTGTTCGTTCCCATTTGCTTGTAGGCTATTGACAAGCTGCCACTGCTTCCAGGTTTATTAGAATTCATAGGAGCACTGGTTTCTTGG

mRNA sequence

ATGGCTTCCATTGTTGCTAGTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCTCAGAAGCTCACTGTTTTTCCCATCGCAAAGAAACGTTCTGCGACTGTTGTTGTAAAGGCTACTGGAGACAGCTCCGATTCTTCTTCCCTTAGTATTATTAAGTCTGTTCAAAATATTTGGGATCAACCTGAAGATAGGCTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTTTATGGACAGCAACAAACTTTGTTACGGCTATTGACAAGCTGCCACTGCTTCCAGGTTTATTAGAATTCATAGGAGCACTGGTTTCTTGG

Coding sequence (CDS)

ATGGCTTCCATTGTTGCTAGTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACCCTTCTGAATACTTCTCAGAAGCTCACTGTTTTTCCCATCGCAAAGAAACGTTCTGCGACTGTTGTTGTAAAGGCTACTGGAGACAGCTCCGATTCTTCTTCCCTTAGTATTATTAAGTCTGTTCAAAATATTTGGGATCAACCTGAAGATAGGCTGGGACTTTTTGGCCTGGGATTTGCAGCTGTAGCAGCTTTATGGACAGCAACAAACTTTGTTACGGCTATTGACAAGCTGCCACTGCTTCCAGGTTTATTAGAATTCATAGGAGCACTGGTTTCTTGG

Protein sequence

MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW

Homology

[Close]

BLAST of MS009493 vs. NCBI nr
Match: XP_022144822.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKS 60
           MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKS
Sbjct: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKS 60

Query: 61  VQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           VQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW
Sbjct: 61  VQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 114

[Close]

BLAST of MS009493 vs. NCBI nr
Match: XP_038897597.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 8.7e-43
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIK 60
           MASIVA+LPPPLLAP KSFTLLNTSQKLT FPIA +RS  VVVKA G SS+SS SL IIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTLLNTSQKLTAFPIANRRSGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           SV+N+WDQPEDRL LFGLGFAAVA +WTATN VTAIDKLPLLPG+LEFIGALVSW
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATVWTATNLVTAIDKLPLLPGVLEFIGALVSW 115

[Close]

BLAST of MS009493 vs. NCBI nr
Match: XP_023000405.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 90/115 (78.26%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIK 60
           MASI A+LPPPLLAPGKSF  L T QK+TVFPIAK RSA  +VKA GDSS+SS S+ IIK
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFPIAKGRSANGIVKAIGDSSESSTSIDIIK 60

Query: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           SV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKLPLLPG+LEFIG LVSW
Sbjct: 61  SVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 115

[Close]

BLAST of MS009493 vs. NCBI nr
Match: XP_004141763.1 (protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis sativus] >KGN45386.1 hypothetical protein Csa_015763 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 91/115 (79.13%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIK 60
           MASIVA+LPPPLLAP KSFT+LN SQKL+VF  A  RS  VVVKA G SS+SS SL I+K
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVFSTANGRSGNVVVKAVGGSSESSTSLDIVK 60

Query: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           SV+N+WDQPEDRL LFGLGFAAVA  WTATN VTAIDKLPLLPG+LEFIGALVSW
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATAWTATNVVTAIDKLPLLPGVLEFIGALVSW 115

[Close]

BLAST of MS009493 vs. NCBI nr
Match: KAG6593469.1 (Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 4.5e-39
Identity = 92/116 (79.31%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQ-KLTVFPIAKKRSATVVVKATGDSSDSS-SLSII 60
           MASI A+LPPPLLAPGKSFT L T Q KLTVFPIAK RSA  +VKA GDSS+SS S+ II
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           KSV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKLPLLPG+LEFIG LVSW
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 116

[Close]

BLAST of MS009493 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDS 60
           MASI A+LP PLL   +           F+L   +  L+   + +  S+ +++VKA+G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFI 114
           SDSS+ L ++ ++QN+WD+ EDRLGL GLGFA + ALW + N +TAIDKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

[Close]

BLAST of MS009493 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-08
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS---- 60
           +AS  AS P  +  P         + K T +   +K    VV +AT +  ++ + +    
Sbjct: 22  LASASASSPSCISLPTLPIQSHTRAAKATAY--CRKIVRNVVTRATTEVGEAPATTTEAE 81

Query: 61  ------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIG 110
                 I+K+ Q  W++ +D+  +  L FA V ALW +   ++AID+LPL+PG+LE +G
Sbjct: 82  TTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVG 138

[Close]

BLAST of MS009493 vs. ExPASy TrEMBL
Match: A0A6J1CUT1 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014410 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKS 60
           MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKS
Sbjct: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLSIIKS 60

Query: 61  VQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           VQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW
Sbjct: 61  VQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 114

[Close]

BLAST of MS009493 vs. ExPASy TrEMBL
Match: A0A6J1KFS9 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111494666 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.7e-40
Identity = 90/115 (78.26%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIK 60
           MASI A+LPPPLLAPGKSF  L T QK+TVFPIAK RSA  +VKA GDSS+SS S+ IIK
Sbjct: 1   MASIFATLPPPLLAPGKSFNPLFTYQKITVFPIAKGRSANGIVKAIGDSSESSTSIDIIK 60

Query: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           SV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKLPLLPG+LEFIG LVSW
Sbjct: 61  SVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 115

[Close]

BLAST of MS009493 vs. ExPASy TrEMBL
Match: A0A0A0KC66 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.8e-40
Identity = 91/115 (79.13%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIK 60
           MASIVA+LPPPLLAP KSFT+LN SQKL+VF  A  RS  VVVKA G SS+SS SL I+K
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVFSTANGRSGNVVVKAVGGSSESSTSLDIVK 60

Query: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           SV+N+WDQPEDRL LFGLGFAAVA  WTATN VTAIDKLPLLPG+LEFIGALVSW
Sbjct: 61  SVRNVWDQPEDRLALFGLGFAAVATAWTATNVVTAIDKLPLLPGVLEFIGALVSW 115

[Close]

BLAST of MS009493 vs. ExPASy TrEMBL
Match: A0A6J1HLG0 (protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464586 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 92/116 (79.31%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQ-KLTVFPIAKKRSATVVVKATGDSSDSS-SLSII 60
           MASI A+LPPPLLAPGKSFT L T Q KLTVFPIAK RSA  +VKA GDSS+SS S+ II
Sbjct: 1   MASIFATLPPPLLAPGKSFTPLFTYQKKLTVFPIAKGRSANGIVKAIGDSSESSTSIDII 60

Query: 61  KSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           KSV+N+WDQPEDRLGLFGLGFAAV   WTATN VTA+DKLPLLPG+LEFIG LVSW
Sbjct: 61  KSVRNVWDQPEDRLGLFGLGFAAVVGAWTATNLVTAVDKLPLLPGVLEFIGILVSW 116

[Close]

BLAST of MS009493 vs. ExPASy TrEMBL
Match: A0A5D3BWY3 (Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002150 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.3e-39
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSS-SLSIIK 60
           MASIVA+LPPPLLAP KSFT+LN SQKL+V   AK R   VVVKA G SS+SS SL IIK
Sbjct: 1   MASIVATLPPPLLAPRKSFTILNISQKLSVLSTAKGRCGNVVVKAVGGSSESSTSLDIIK 60

Query: 61  SVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIGALVSW 115
           SV+N+WDQPEDR  LFGLGFAAVA  WTATN VTAIDKLPLLPG+LEFIGALVSW
Sbjct: 61  SVRNVWDQPEDRFALFGLGFAAVATAWTATNLVTAIDKLPLLPGVLEFIGALVSW 115

[Close]

BLAST of MS009493 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-20
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDS 60
           MASI A+LP PLL   +           F+L   +  L+   + +  S+ +++VKA+G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFI 114
           SDSS+ L ++ ++QN+WD+ EDRLGL GLGFA + ALW + N +TAIDKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

[Close]

BLAST of MS009493 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 9.4e-19
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKS----------FTLLNTSQKLTVFPIAKKRSA-TVVVKATGDS 60
           MASI A+LP PLL   +           F+L   +  L+   + +  S+ +++VKA+G+S
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 61  SDSSS-LSIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFI 114
           SDSS+ L ++ ++QN WD+ EDRLGL GLGFA + ALW + N +TAIDKLP++    E +
Sbjct: 61  SDSSTDLDVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELV 120

[Close]

BLAST of MS009493 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-09
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS---- 60
           +AS  AS P  +  P         + K T +   +K    VV +AT +  ++ + +    
Sbjct: 22  LASASASSPSCISLPTLPIQSHTRAAKATAY--CRKIVRNVVTRATTEVGEAPATTTEAE 81

Query: 61  ------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIG 110
                 I+K+ Q  W++ +D+  +  L FA V ALW +   ++AID+LPL+PG+LE +G
Sbjct: 82  TTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVG 138

[Close]

BLAST of MS009493 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-09
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 1   MASIVASLPPPLLAPGKSFTLLNTSQKLTVFPIAKKRSATVVVKATGDSSDSSSLS---- 60
           +AS  AS P  +  P         + K T +   +K    VV +AT +  ++ + +    
Sbjct: 22  LASASASSPSCISLPTLPIQSHTRAAKATAY--CRKIVRNVVTRATTEVGEAPATTTEAE 81

Query: 61  ------IIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKLPLLPGLLEFIG 110
                 I+K+ Q  W++ +D+  +  L FA V ALW +   ++AID+LPL+PG+LE +G
Sbjct: 82  TTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVG 138

[Close]

BLAST of MS009493 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 5.0e-04
Identity = 21/71 (29.58%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 42  VVKATGDSSDSSSL---SIIKSVQNIWDQPEDRLGLFGLGFAAVAALWTATNFVTAIDKL 101
           ++K    S ++SS+    +I  ++  WD  E++  +   G  A+ A+W ++  V AI+ +
Sbjct: 58  LLKTRASSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 102 PLLPGLLEFIG 110
           PLLP ++E +G
Sbjct: 118 PLLPKVMELVG 128

The following BLAST results are available for this feature:

BLAST of MS009493 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144822.1	2.5e-53	100.00	protein CURVATURE THYLAKOID 1C, chloroplastic [Momordica charantia]	[more]
XP_038897597.1	8.7e-43	83.48	protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida]	[more]
XP_023000405.1	1.2e-39	78.26	protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima] >XP_023000406.1...	[more]
XP_004141763.1	2.0e-39	79.13	protein CURVATURE THYLAKOID 1C, chloroplastic [Cucumis sativus] >KGN45386.1 hypo...	[more]
KAG6593469.1	4.5e-39	79.31	Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS009493 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M812	2.4e-19	43.20	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LCA1	5.6e-08	30.25	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of MS009493 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUT1	1.2e-53	100.00	protein CURVATURE THYLAKOID 1C, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1KFS9	5.7e-40	78.26	protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0KC66	9.8e-40	79.13	CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447010 PE=4 S...	[more]
A0A6J1HLG0	2.2e-39	79.31	protein CURVATURE THYLAKOID 1C, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3BWY3	8.3e-39	78.26	Protein CURVATURE THYLAKOID 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MS009493 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52220.1	1.7e-20	43.20	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G52220.2	9.4e-19	43.20	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT2G46820.1	4.0e-09	30.25	photosystem I P subunit	[more]
AT2G46820.2	4.0e-09	30.25	photosystem I P subunit	[more]
AT4G01150.1	5.0e-04	29.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 60..113 e-value: 2.1E-12 score: 46.7
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 1..114
None	No IPR available	PANTHER	PTHR33222:SF3	PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTIC	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009493.1	MS009493.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009579	thylakoid