MS009474 (gene) Bitter gourd (TR) v1

Overview
NameMS009474
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmajor pollen allergen Ole e 6-like
Locationscaffold813: 1587179 .. 1587454 (+)
RNA-Seq ExpressionMS009474
SyntenyMS009474
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCAAGAAGATGAATGCAGTGTTTCTGATGTGCATTGTGGTGGTCGCGGCCATAGTGCAGTTCTCAAGTGCCGATAACGTCGAGAAGAAGGAGGACAAGTTCGAGGCGAAGTTTACGACGAGATTCAAGTTATGCTACGCAACTTGCGAGAAGGAGTGTTTGGAGAAAGGCAATGGCATTAGCCACTGTGAAGTTAAGTGCGACGAGGATTGTGATGAAAAGGAAGTTGCTGGTACGTCATCTTATATGCATTATAAAGTATCGAAACTT

mRNA sequence

ATGGCCGCCAAGAAGATGAATGCAGTGTTTCTGATGTGCATTGTGGTGGTCGCGGCCATAGTGCAGTTCTCAAGTGCCGATAACGTCGAGAAGAAGGAGGACAAGTTCGAGGCGAAGTTTACGACGAGATTCAAGTTATGCTACGCAACTTGCGAGAAGGAGTGTTTGGAGAAAGGCAATGGCATTAGCCACTGTGAAGTTAAGTGCGACGAGGATTGTGATGAAAAGGAAGTTGCTGGTACGTCATCTTATATGCATTATAAAGTATCGAAACTT

Coding sequence (CDS)

ATGGCCGCCAAGAAGATGAATGCAGTGTTTCTGATGTGCATTGTGGTGGTCGCGGCCATAGTGCAGTTCTCAAGTGCCGATAACGTCGAGAAGAAGGAGGACAAGTTCGAGGCGAAGTTTACGACGAGATTCAAGTTATGCTACGCAACTTGCGAGAAGGAGTGTTTGGAGAAAGGCAATGGCATTAGCCACTGTGAAGTTAAGTGCGACGAGGATTGTGATGAAAAGGAAGTTGCTGGTACGTCATCTTATATGCATTATAAAGTATCGAAACTT

Protein sequence

MAAKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGISHCEVKCDEDCDEKEVAGTSSYMHYKVSKL
Homology
BLAST of MS009474 vs. NCBI nr
Match: XP_023549460.1 (major pollen allergen Ole e 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM AV L+C+VVVAA+   S+ ++   KE K+EAKF  +++LCY  CEKECLEKGNG 
Sbjct: 2  AKKMIAVLLVCVVVVAALQASSATESA--KEAKYEAKFEAKYRLCYEKCEKECLEKGNGQ 61

Query: 63 SHCEVKCDEDCDEKEVAGTSSYMHYKV 90
          S CEVKCDEDCDEKE A     +H KV
Sbjct: 62 SFCEVKCDEDCDEKEAA---DKLHIKV 83

BLAST of MS009474 vs. NCBI nr
Match: XP_038906682.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM AVFLMCIVV+AA+ QF++A+   ++  K+EAKF  ++K CY TCEKECLEKGNG 
Sbjct: 2  AKKMIAVFLMCIVVMAAL-QFTTAN---EEVAKYEAKFDAKYKSCYETCEKECLEKGNGQ 61

Query: 63 SHCEVKCDEDCDEKEVA 80
          S CEVKCDEDCDEKE A
Sbjct: 62 SFCEVKCDEDCDEKETA 74

BLAST of MS009474 vs. NCBI nr
Match: XP_008456958.1 (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa] >TYJ96804.1 major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-18
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM A+FLMCIVVVAA+ QF+SA N E +  K+EAKF  ++K C+ TCEKECLE G+G 
Sbjct: 2  AKKMIALFLMCIVVVAAL-QFASA-NKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQ 61

Query: 63 SHCEVKCDEDCDEKEVA 80
          S+CEVKCDEDC+EKEVA
Sbjct: 62 SYCEVKCDEDCNEKEVA 76

BLAST of MS009474 vs. NCBI nr
Match: XP_038891517.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM AVFLMCIVVVAA+ QF++A+  E +  K+EAKF  ++K CY TCEKECL  G+G 
Sbjct: 2  AKKMMAVFLMCIVVVAAL-QFATAN--EDEVTKYEAKFDAKYKSCYETCEKECLANGSGQ 61

Query: 63 SHCEVKCDEDCDEKEVA 80
          S CEVKCDEDCDEKEVA
Sbjct: 62 SFCEVKCDEDCDEKEVA 75

BLAST of MS009474 vs. NCBI nr
Match: KAG6575284.1 (Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575286.1 Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM AV L+CIVVVAA+ Q SSA     KE K+EAKF  +++ CY  CEKECLEKGNG 
Sbjct: 2  AKKMIAVLLVCIVVVAAL-QVSSATE-SAKEAKYEAKFEAKYRSCYEKCEKECLEKGNGQ 61

Query: 63 SHCEVKCDEDCDEKEVAGTSSYMHYKV 90
          S CEVKCDEDCDEKE   T+  +H KV
Sbjct: 62 SFCEVKCDEDCDEKE---TADKLHIKV 83

BLAST of MS009474 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-07
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0

Query: 43 RFKLCYATCEKECLEKGNGISHCEVKCDEDCDEKEV 79
          +FK CY TC KEC +KGNG + CE+KCD DC  K+V
Sbjct: 4  QFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDV 39

BLAST of MS009474 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM A+FLMCIVVVAA+ QF+SA N E +  K+EAKF  ++K C+ TCEKECLE G+G 
Sbjct: 2  AKKMIALFLMCIVVVAAL-QFASA-NKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQ 61

Query: 63 SHCEVKCDEDCDEKEVA 80
          S+CEVKCDEDC+EKEVA
Sbjct: 62 SYCEVKCDEDCNEKEVA 76

BLAST of MS009474 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM A+FLMCIVVVAA+ QF+SA N E +  K+EAKF  ++K C+ TCEKECLE G+G 
Sbjct: 2  AKKMIALFLMCIVVVAAL-QFASA-NKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQ 61

Query: 63 SHCEVKCDEDCDEKEVA 80
          S+CEVKCDEDC+EKEVA
Sbjct: 62 SYCEVKCDEDCNEKEVA 76

BLAST of MS009474 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM AV L+CIVVVAA+ Q SSA     KE K+EAKF  +++LCY  CEKECLEKGNG 
Sbjct: 2  AKKMIAVLLVCIVVVAAL-QVSSATE-SAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQ 61

Query: 63 SHCEVKCDEDCDEKEVAGTSSYMHYKV 90
          S CEVKCDEDC EKE A     +H KV
Sbjct: 62 SFCEVKCDEDCGEKEAA---DKLHIKV 83

BLAST of MS009474 vs. ExPASy TrEMBL
Match: A0A6J1JXL5 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.5e-18
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKKM AV L+CIVV+AA+   S+ ++V  KE K+EAKF  +++LCY  CEKECLEKGNG 
Sbjct: 2  AKKMIAVLLVCIVVMAALQVSSATESV--KEAKYEAKFEAKYRLCYEKCEKECLEKGNGQ 61

Query: 63 SHCEVKCDEDCDEKEVAGTSSYMHYKV 90
          S CEVKCDEDC EKE A     +H KV
Sbjct: 62 SFCEVKCDEDCGEKEAA---DKLHIKV 83

BLAST of MS009474 vs. ExPASy TrEMBL
Match: A0A6J1JVQ4 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.5e-18
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 3  AKKMNAVFLMCIVVVAAIVQFSSADNVEKKEDKFEAKFTTRFKLCYATCEKECLEKGNGI 62
          AKK+ AV L+CIVV+AA+   S+ ++V  KE K+EAKF  +++LCY  CEKECLEKGN  
Sbjct: 2  AKKIIAVLLVCIVVMAALQVSSATESV--KEAKYEAKFEAKYRLCYEKCEKECLEKGNDQ 61

Query: 63 SHCEVKCDEDCDEKEVAGTSSYMHYKV 90
          S CEVKCDEDCDEKEVA     +H KV
Sbjct: 62 SFCEVKCDEDCDEKEVA---DKLHIKV 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023549460.12.7e-1860.92major pollen allergen Ole e 6-like [Cucurbita pepo subsp. pepo][more]
XP_038906682.12.7e-1868.83major pollen allergen Ole e 6-like [Benincasa hispida][more]
XP_008456958.13.5e-1868.83PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo] >KAA0066995.1 major... [more]
XP_038891517.14.6e-1868.83major pollen allergen Ole e 6-like [Benincasa hispida][more]
KAG6575284.14.6e-1864.37Major pollen allergen Ole e 6, partial [Cucurbita argyrosperma subsp. sororia] >... [more]
Match NameE-valueIdentityDescription
O241722.9e-0761.11Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3BCS21.7e-1868.83Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3C5301.7e-1868.83major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ... [more]
A0A6J1EQ215.0e-1864.37major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354... [more]
A0A6J1JXL56.5e-1860.92major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 P... [more]
A0A6J1JVQ46.5e-1860.92major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036466Pollen allergen ole e 6 superfamilyGENE3D1.10.287.720Pollen allergen ole e 6coord: 41..88
e-value: 1.8E-13
score: 51.7
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILY111388Pollen allergen ole e 6coord: 43..79
IPR015333Pollen allergen ole e 6PFAMPF09253Ole_e_6coord: 47..80
e-value: 8.2E-12
score: 44.9
IPR015333Pollen allergen ole e 6PANTHERPTHR35632MAJOR POLLEN ALLERGEN OLE E 6-LIKEcoord: 3..80
NoneNo IPR availablePANTHERPTHR35632:SF5SUBFAMILY NOT NAMEDcoord: 3..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009474.1MS009474.1mRNA