MS009462 (gene) Bitter gourd (TR) v1

Overview


Name	MS009462
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	thionin-like protein 2
Location	scaffold813: 1470672 .. 1470995 (+)
RNA-Seq Expression	MS009462
Synteny	MS009462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACCGGAGAGGGAAGTGGGGTTTAAGTACTGTAATGGTGTGGCTGGCGGTGGTCAGCTCCGTTATGACGACGGCGGAATCCACGTCCTTTCAAGAATGCTACGCCACCTGCTTCGTCATCTGCGCCATCACCCCCGGCGCCTCCTTCTCCGAATGCCCTCTCAAATGCCTGCAGGCCTGCATCATCCCCTCTTTCCCCATCGACGCCGCCGCCGCCACCGCCACCGCTGCCGACCGCCGAACGCACAACCATTTCTTCTGCAAGCTCGGCTGCGCAGCTACCTTATGTACCAACTTCACCACCAACCATAACCCAGGT

mRNA sequence

ATGGAGAACCGGAGAGGGAAGTGGGGTTTAAGTACTGTAATGGTGTGGCTGGCGGTGGTCAGCTCCGTTATGACGACGGCGGAATCCACGTCCTTTCAAGAATGCTACGCCACCTGCTTCGTCATCTGCGCCATCACCCCCGGCGCCTCCTTCTCCGAATGCCCTCTCAAATGCCTGCAGGCCTGCATCATCCCCTCTTTCCCCATCGACGCCGCCGCCGCCACCGCCACCGCTGCCGACCGCCGAACGCACAACCATTTCTTCTGCAAGCTCGGCTGCGCAGCTACCTTATGTACCAACTTCACCACCAACCATAACCCAGGT

Coding sequence (CDS)

ATGGAGAACCGGAGAGGGAAGTGGGGTTTAAGTACTGTAATGGTGTGGCTGGCGGTGGTCAGCTCCGTTATGACGACGGCGGAATCCACGTCCTTTCAAGAATGCTACGCCACCTGCTTCGTCATCTGCGCCATCACCCCCGGCGCCTCCTTCTCCGAATGCCCTCTCAAATGCCTGCAGGCCTGCATCATCCCCTCTTTCCCCATCGACGCCGCCGCCGCCACCGCCACCGCTGCCGACCGCCGAACGCACAACCATTTCTTCTGCAAGCTCGGCTGCGCAGCTACCTTATGTACCAACTTCACCACCAACCATAACCCAGGT

Protein sequence

MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNPG

Homology

[Close]

BLAST of MS009462 vs. NCBI nr
Match: XP_022146010.1 (thionin-like protein 2 [Momordica charantia])

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60
           MENRRGKWGLSTVMVWL VVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ
Sbjct: 1   MENRRGKWGLSTVMVWLVVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60

Query: 61  ACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 108
           ACIIPSFPID AAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP
Sbjct: 61  ACIIPSFPIDDAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 107

[Close]

BLAST of MS009462 vs. NCBI nr
Match: KAG6575558.1 (hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 2.9e-27
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60
           ME+ + K GL   M WL  V S +TTA STSFQECYATCFVICAITPG +FS+CPL+CLQ
Sbjct: 1   MESCKAKLGL---MAWL--VLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQ 60

Query: 61  ACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNPG 109
           ACIIPSFPI  AAA      R+  N FFC+LGCAA+ CT F+T+ NPG
Sbjct: 61  ACIIPSFPIHNAAAD-DDFHRQQKNQFFCELGCAASSCTKFSTHQNPG 102

[Close]

BLAST of MS009462 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   KWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQACIIPS 66
           KW L   M WL + S  ++TA STSFQECYATCFVICAITPG +FS+CPL+CLQACI+PS
Sbjct: 8   KWAL---MAWLLLTS--LSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPS 67

Query: 67  FPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNPG 109
           FPID A        ++  NHFFCKLGCAA+ CT F+T  NPG
Sbjct: 68  FPIDDADVVHR---QQQQNHFFCKLGCAASSCTKFSTKQNPG 101

[Close]

BLAST of MS009462 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 8.3e-27
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60
           ME+ + K GL   M WL  V S +TTA STSFQECYATCFVICAITPG +FS+CPL+CLQ
Sbjct: 1   MESCKAKLGL---MAWL--VLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQ 60

Query: 61  ACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 108
           ACIIPSFPI  AAA      R+  N FFC+LGCAA+ CT F+T+ NP
Sbjct: 61  ACIIPSFPIHNAAAD-DDVHRQQKNQFFCELGCAASSCTKFSTHQNP 101

[Close]

BLAST of MS009462 vs. NCBI nr
Match: KAG7014099.1 (hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 8.3e-27
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60
           ME+ + K GL   M WL  V S +TTA STSFQECYATCFVICAITPG +FS+CPL+CLQ
Sbjct: 1   MESCKAKLGL---MAWL--VLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQ 60

Query: 61  ACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 108
           ACIIPSFPI  AAA      R+  N FFC+LGCAA+ CT F+T+ NP
Sbjct: 61  ACIIPSFPIHNAAAD-DDVHRQQKNQFFCELGCAASSCTKFSTHQNP 101

[Close]

BLAST of MS009462 vs. ExPASy TrEMBL
Match: A0A6J1CW29 (thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.6e-54
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60
           MENRRGKWGLSTVMVWL VVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ
Sbjct: 1   MENRRGKWGLSTVMVWLVVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60

Query: 61  ACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 108
           ACIIPSFPID AAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP
Sbjct: 61  ACIIPSFPIDDAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 107

[Close]

BLAST of MS009462 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   KWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQACIIPS 66
           KW L   M WL + S  ++TA STSFQECYATCFVICAITPG +FS+CPL+CLQACI+PS
Sbjct: 8   KWAL---MAWLLLTS--LSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPS 67

Query: 67  FPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNPG 109
           FPID A        ++  NHFFCKLGCAA+ CT F+T  NPG
Sbjct: 68  FPIDDADVVHR---QQQQNHFFCKLGCAASSCTKFSTKQNPG 101

[Close]

BLAST of MS009462 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.0e-27
Identity = 69/107 (64.49%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60
           ME+ + K GL   M WL  V S +TTA STSFQECYATCFVICAITPG +FS+CPL+CLQ
Sbjct: 1   MESCKAKLGL---MAWL--VLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQ 60

Query: 61  ACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 108
           ACIIPSFPI  AAA      R+  N FFC+LGCAA+ CT F+T+ NP
Sbjct: 61  ACIIPSFPIHNAAAD-DDVHRQQKNQFFCELGCAASSCTKFSTHQNP 101

[Close]

BLAST of MS009462 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.0e-27
Identity = 64/102 (62.75%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 7   KWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQACIIPS 66
           KW L   M WL + S  ++TA STSFQECYATCFVICAITPG +FS+CPL+CLQACI+PS
Sbjct: 8   KWAL---MAWLLLTS--LSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPS 67

Query: 67  FPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNPG 109
           FPID          ++  NHFFCKLGCAA+ CT F+T  NPG
Sbjct: 68  FPID---DDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPG 101

[Close]

BLAST of MS009462 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-26
Identity = 68/107 (63.55%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MENRRGKWGLSTVMVWLAVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQ 60
           ME+ + K GL   M WL  V S +TTA STSFQECYATCF+ICAITPG +FS+CPL+CLQ
Sbjct: 1   MESCKAKLGL---MAWL--VLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQ 60

Query: 61  ACIIPSFPIDAAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNP 108
           ACIIPSFPI  AA  A    R+  N FFC+LGCAA+ CT F+T  NP
Sbjct: 61  ACIIPSFPIHNAA--ADDVHRQQKNQFFCELGCAASSCTKFSTQKNP 100

The following BLAST results are available for this feature:

BLAST of MS009462 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146010.1	1.8e-53	98.13	thionin-like protein 2 [Momordica charantia]	[more]
KAG6575558.1	2.9e-27	64.81	hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011659556.1	6.4e-27	63.73	thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_01...	[more]
XP_022953260.1	8.3e-27	64.49	thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein...	[more]
KAG7014099.1	8.3e-27	64.49	hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS009462 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW29	8.6e-54	98.13	thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1	[more]
A0A0A0K781	3.1e-27	63.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1	[more]
A0A6J1GMH5	4.0e-27	64.49	thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1	[more]
A0A1S3CDU4	9.0e-27	62.75	thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1	[more]
A0A6J1JZ84	1.5e-26	63.55	thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1	[more]

BLAST of MS009462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038975	Thionin-like protein	PANTHER	PTHR36312	THIONIN-LIKE PROTEIN 1	coord: 11..107
None	No IPR available	PANTHER	PTHR36312:SF1	THIONIN-LIKE PROTEIN 1	coord: 11..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009462.1	MS009462.1	mRNA