MS009454 (gene) Bitter gourd (TR) v1

Overview


Name	MS009454
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive protein
Location	scaffold813: 1401203 .. 1402568 (-)
RNA-Seq Expression	MS009454
Synteny	MS009454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAGGGCCACGTCGTCGGGTGGCCACCGGTGTGTTCGTATCGGAAAAAGAATAGCTTTGGAAATAAGGAGTTGAACGAGAACGAGAACGAGAACTCGAAAATGTACGTGAAGATTAGCATGGATGGAGCTCCATTTCTTCGTAAGCTTGACTTGGGTTCCCATAAAGGATACCCGGATCTTGCCCTCGCTCTTGAGAAGCTTTTTGCTTGCTTTGGAACTGGTAAATTTTTAATCCTTTGTTTTTTTCTTTTTTTCCCTCTCTCTATTTTTTAGGGTTTAGATACTAATTATATATTATTGTTGCATGGTAAAATAATAAGAGATTAATTGTCATTTAATTAGAAGCACTTTTCGAAGAATTTGATGTCTAAAGAATATGTCTGAGAGTAAGAGCTAGAGTCGTGGTTTTCAAGAATCCAATTTTTATTTTTTAAATTAGGCTTTTTTTTTTTTTCTNAATAAAATGAATTGTAAATCTTCTAGAAGTAATATTTCTGGCTGATTTATTTAATCTCTTATAGTGTGATGTGAAATAAATGAAATTTCTATAAAAAGAACAAACTTTTACTATTTTATTTTTTGTAGATATAATCCTTCCATTTTAGAAAGTTAAGAGAATAAATTAGCGAAAAAAAATGAAATTTTTAATTTAAGATAAGTTCGAAGACAAAAAAATAGACCCTTTTCTTCTCGGCTCTGCCTAGAGCTGTGATATAAAACGAAATATTTGGAATTCAATATAGTGAAATTTTATATCTAGAATTAATGAGATAGAAAAATTGAAAAATTAAGTAGAGTAAAAAAAGTATAATGTATTGTAATAAGGCTTTAAATACTATTTTGGTTTCTGCCTTTCAATTTTGGTTTATTTTACTTATTAACTTTTAAAACGTCCAACAACTTTTGTTTCCGTATTTTTAAAATATTCATTTTGATATCACAATTTTAGACATAACATTTCAACTCACTGAATTTCTTGAAATGTAGTGATAAATTTTTATTAAAAAGTTTCTATTGCATATAAAATTTCTATTAAAACCTTACAAGTAGATATCAAAATATTCACTTTAGAGACTAAAAGAGACGTTTTAAAAGTATGATGACTAAAATAAACAGAATAAAAAATATAACGATCAAAATAGACGTTTTAAAGGTATATAGACCAAAATAGTATTAAAATCTATAACTAGTGGTATATTTTTAAAAAAATAAAAAATATGTATATGGAAGAATAATGACAAAGTAGTGGCATATTTGTAAAATGACAGGGAAGACATTAAAGCATGGAGAAAGTTCTGATTACGTTCCCATTTATGAGGACAAAGATGGGGACTGGATGCTTGTGGGAGACGTTCCTTGGGAG

mRNA sequence

AGTAAGGGCCACGTCGTCGGGTGGCCACCGGTGTGTTCGTATCGGAAAAAGAATAGCTTTGGAAATAAGGAGTTGAACGAGAACGAGAACGAGAACTCGAAAATGTACGTGAAGATTAGCATGGATGGAGCTCCATTTCTTCGTAAGCTTGACTTGGGTTCCCATAAAGGATACCCGGATCTTGCCCTCGCTCTTGAGAAGCTTTTTGCTTGCTTTGGAACTGGTAAATTTTTAATCCTTTGGAAGACATTAAAGCATGGAGAAAGTTCTGATTACGTTCCCATTTATGAGGACAAAGATGGGGACTGGATGCTTGTGGGAGACGTTCCTTGGGAG

Coding sequence (CDS)

AGTAAGGGCCACGTCGTCGGGTGGCCACCGGTGTGTTCGTATCGGAAAAAGAATAGCTTTGGAAATAAGGAGTTGAACGAGAACGAGAACGAGAACTCGAAAATGTACGTGAAGATTAGCATGGATGGAGCTCCATTTCTTCGTAAGCTTGACTTGGGTTCCCATAAAGGATACCCGGATCTTGCCCTCGCTCTTGAGAAGCTTTTTGCTTGCTTTGGAACTGGTAAATTTTTAATCCTTTGGAAGACATTAAAGCATGGAGAAAGTTCTGATTACGTTCCCATTTATGAGGACAAAGATGGGGACTGGATGCTTGTGGGAGACGTTCCTTGGGAG

Protein sequence

SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDLALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE

Homology

[Close]

BLAST of MS009454 vs. NCBI nr
Match: XP_022151308.1 (auxin-induced protein AUX22 [Momordica charantia])

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 104/112 (92.86%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           SKGHVVGWPPV SYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD
Sbjct: 45  SKGHVVGWPPVRSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 104

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LALALEKLFACFG G      KTLKHGESSDYVPIYEDKDGDWMLVGDVPWE
Sbjct: 105 LALALEKLFACFGAG------KTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 150

[Close]

BLAST of MS009454 vs. NCBI nr
Match: XP_038899110.1 (auxin-induced protein AUX22-like [Benincasa hispida])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 96/111 (86.49%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 2   KGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDL 61
           KG VVGWPPVCSYRKKNSFG KE   +E+ENSKMYVKISMDGAPFLRKLDLGSHKGY DL
Sbjct: 53  KGQVVGWPPVCSYRKKNSFGEKESTLHESENSKMYVKISMDGAPFLRKLDLGSHKGYSDL 112

Query: 62  ALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           ALAL+KLFACFGTG      KTLKHGESSDYVPIYEDKDGDWMLVGDVPWE
Sbjct: 113 ALALQKLFACFGTG------KTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 157

[Close]

BLAST of MS009454 vs. NCBI nr
Match: XP_004135828.1 (auxin-induced protein IAA6 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNE--NENENSKMYVKISMDGAPFLRKLDLGSHKGY 60
           SKG VVGWPPVCSYRK+NSFG KE +   +ENENSKMYVKISMDGAPFLRKLDLGSHKGY
Sbjct: 60  SKGQVVGWPPVCSYRKRNSFGEKESSSLLHENENSKMYVKISMDGAPFLRKLDLGSHKGY 119

Query: 61  PDLALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
            DLALALEKLFACFGTG      KTLKHGES DYVPIYEDKDGDWMLVGDVPWE
Sbjct: 120 SDLALALEKLFACFGTG------KTLKHGESCDYVPIYEDKDGDWMLVGDVPWE 167

[Close]

BLAST of MS009454 vs. NCBI nr
Match: XP_023549188.1 (LOW QUALITY PROTEIN: auxin-induced protein AUX22-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           SKG VVGWPPVCSYRKKNSFG KE +  +NENSKMYVKISMDGAPFLRKLDLGSH+GY D
Sbjct: 107 SKGQVVGWPPVCSYRKKNSFGEKE-SLLKNENSKMYVKISMDGAPFLRKLDLGSHEGYSD 166

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LA+ALEKLFACFGTG      KT KHGESSDYVPIYEDKDGDWMLVGDVPWE
Sbjct: 167 LAVALEKLFACFGTG------KTSKHGESSDYVPIYEDKDGDWMLVGDVPWE 211

[Close]

BLAST of MS009454 vs. NCBI nr
Match: KAG7014105.1 (Auxin-induced protein AUX22, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 95/112 (84.82%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           SKG VVGWPPVCSYRKKNSFG KE +  +NENSKMYVKISMDGAPFLRKLDLGSH+GY D
Sbjct: 107 SKGQVVGWPPVCSYRKKNSFGEKE-SLLKNENSKMYVKISMDGAPFLRKLDLGSHEGYSD 166

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LA+ALEKLFACFGTG      KT KHGESSDYVPIYEDKDGDWMLVGDVPWE
Sbjct: 167 LAVALEKLFACFGTG------KTSKHGESSDYVPIYEDKDGDWMLVGDVPWE 211

[Close]

BLAST of MS009454 vs. ExPASy Swiss-Prot
Match: P13088 (Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-37
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           +K  VVGWPPVCSYRKKNS     +NE     SKMYVK+SMDGAPFLRK+DLG HKGY D
Sbjct: 61  NKSQVVGWPPVCSYRKKNS-----MNEGA---SKMYVKVSMDGAPFLRKIDLGLHKGYSD 120

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LALAL+KLF C+G      + + LK+ ++S++VPIYEDKDGDWMLVGDVPWE
Sbjct: 121 LALALDKLFGCYG------MVEALKNADNSEHVPIYEDKDGDWMLVGDVPWE 158

[Close]

BLAST of MS009454 vs. ExPASy Swiss-Prot
Match: O24541 (Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-34
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           +K  VVGWPPVCSYRKKN+     +NE      K+YVK+SMDGAPFLRK+DL  HKGY D
Sbjct: 56  TKNQVVGWPPVCSYRKKNT-----VNE-----PKLYVKVSMDGAPFLRKIDLAMHKGYSD 115

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LA AL+K F C+G      + + LK  E++++VPIYEDKDGDWMLVGDVPWE
Sbjct: 116 LAFALDKFFGCYG------ICEALKDAENAEHVPIYEDKDGDWMLVGDVPWE 151

[Close]

BLAST of MS009454 vs. ExPASy Swiss-Prot
Match: P49680 (Auxin-induced protein IAA6 OS=Pisum sativum OX=3888 GN=IAA6 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-34
Identity = 71/111 (63.96%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 2   KGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDL 61
           K  VVGWPPVCSYRKKN           NE SKMY+K+SMDGAP+LRK+DL  HKGY +L
Sbjct: 53  KNQVVGWPPVCSYRKKNM----------NEGSKMYMKVSMDGAPYLRKIDLCLHKGYLEL 112

Query: 62  ALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           ALALEKLF C G      + + LK  E+ ++VPIYEDKDGDWMLVGDVPWE
Sbjct: 113 ALALEKLFDCCG------IEEALKDAENCEHVPIYEDKDGDWMLVGDVPWE 147

[Close]

BLAST of MS009454 vs. ExPASy Swiss-Prot
Match: O24409 (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-30
Identity = 66/114 (57.89%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKM---YVKISMDGAPFLRKLDLGSHKG 60
           +K  VVGWPPVCSYRKKNS         E   +K+   YVK+SMDG P+LRK+DLGS +G
Sbjct: 67  AKSQVVGWPPVCSYRKKNSC-------KEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQG 126

Query: 61  YPDLALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPW 112
           Y DLA AL+KLF   G G        LK G++ +YV IYEDKDGDWML GDVPW
Sbjct: 127 YDDLAFALDKLFGFRGIG------VALKDGDNCEYVTIYEDKDGDWMLAGDVPW 167

[Close]

BLAST of MS009454 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.1e-28
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 2   KGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDL 61
           K  +VGWPPV SYRK N    K  NE+E+E   +YVK+SMDGAP+LRK+DL  +KGY +L
Sbjct: 62  KAQIVGWPPVRSYRKNNIQSKK--NESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSEL 121

Query: 62  ALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
             ALE +F  F  G++          + SD+VP YEDKDGDWML+GDVPWE
Sbjct: 122 LKALEVMFK-FSVGEYF----ERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS009454 vs. ExPASy TrEMBL
Match: A0A6J1DBU7 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111019270 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.9e-54
Identity = 104/112 (92.86%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           SKGHVVGWPPV SYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD
Sbjct: 45  SKGHVVGWPPVRSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 104

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LALALEKLFACFG G      KTLKHGESSDYVPIYEDKDGDWMLVGDVPWE
Sbjct: 105 LALALEKLFACFGAG------KTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 150

[Close]

BLAST of MS009454 vs. ExPASy TrEMBL
Match: A0A0A0KC02 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_7G440550 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNE--NENENSKMYVKISMDGAPFLRKLDLGSHKGY 60
           SKG VVGWPPVCSYRK+NSFG KE +   +ENENSKMYVKISMDGAPFLRKLDLGSHKGY
Sbjct: 60  SKGQVVGWPPVCSYRKRNSFGEKESSSLLHENENSKMYVKISMDGAPFLRKLDLGSHKGY 119

Query: 61  PDLALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
            DLALALEKLFACFGTG      KTLKHGES DYVPIYEDKDGDWMLVGDVPWE
Sbjct: 120 SDLALALEKLFACFGTG------KTLKHGESCDYVPIYEDKDGDWMLVGDVPWE 167

[Close]

BLAST of MS009454 vs. ExPASy TrEMBL
Match: A0A6J1GPU1 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111456436 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 94/112 (83.93%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           SKG VVGWPPVCSYRKKNSFG KE +  +NENSKMYVKISMDGAPFLRKLDLGSH+GY D
Sbjct: 52  SKGQVVGWPPVCSYRKKNSFGEKE-SLLKNENSKMYVKISMDGAPFLRKLDLGSHEGYSD 111

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LA+ALEKLF CFGTG      KT KHGESSDYVPIYEDKDGDWMLVGDVPWE
Sbjct: 112 LAVALEKLFGCFGTG------KTSKHGESSDYVPIYEDKDGDWMLVGDVPWE 156

[Close]

BLAST of MS009454 vs. ExPASy TrEMBL
Match: A0A6J1JTD7 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111488703 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.9e-46
Identity = 94/112 (83.93%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPD 60
           SKG VVGWPPVCSYRKKNSFG KE +  ++EN KMYVKISMDGAPFLRKLDLGSH+GY D
Sbjct: 107 SKGQVVGWPPVCSYRKKNSFGEKE-SLLKSENLKMYVKISMDGAPFLRKLDLGSHQGYSD 166

Query: 61  LALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           LALALEKLFACFGTG      KT KHGESSDYVPIYEDKDGDWMLVGDVPWE
Sbjct: 167 LALALEKLFACFGTG------KTSKHGESSDYVPIYEDKDGDWMLVGDVPWE 211

[Close]

BLAST of MS009454 vs. ExPASy TrEMBL
Match: A0A5D3CGF4 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002500 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 92/115 (80.00%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNE---NENENSKMYVKISMDGAPFLRKLDLGSHKG 60
           SKG VVGWPPVCSYRK+NSFG KE +    +ENENSKMYVKISMDGAPFLRKLDLGSHK 
Sbjct: 58  SKGQVVGWPPVCSYRKRNSFGEKESSSSLPHENENSKMYVKISMDGAPFLRKLDLGSHKD 117

Query: 61  YPDLALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           Y DLA+ALEKLF CFG+       KTLKHGES DYVPIYEDKDGDWMLVGDVPWE
Sbjct: 118 YSDLAVALEKLFGCFGS-----TGKTLKHGESCDYVPIYEDKDGDWMLVGDVPWE 167

[Close]

BLAST of MS009454 vs. TAIR 10
Match: AT3G15540.1 (indole-3-acetic acid inducible 19 )

HSP 1 Score: 131.0 bits (328), Expect = 6.2e-31
Identity = 66/114 (57.89%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   SKGHVVGWPPVCSYRKKNSFGNKELNENENENSKM---YVKISMDGAPFLRKLDLGSHKG 60
           +K  VVGWPPVCSYRKKNS         E   +K+   YVK+SMDG P+LRK+DLGS +G
Sbjct: 67  AKSQVVGWPPVCSYRKKNSC-------KEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQG 126

Query: 61  YPDLALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPW 112
           Y DLA AL+KLF   G G        LK G++ +YV IYEDKDGDWML GDVPW
Sbjct: 127 YDDLAFALDKLFGFRGIG------VALKDGDNCEYVTIYEDKDGDWMLAGDVPW 167

[Close]

BLAST of MS009454 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 124.4 bits (311), Expect = 5.8e-29
Identity = 61/111 (54.95%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 2   KGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDL 61
           K  +VGWPPV SYRK N    K  NE+E+E   +YVK+SMDGAP+LRK+DL  +KGY +L
Sbjct: 62  KAQIVGWPPVRSYRKNNIQSKK--NESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSEL 121

Query: 62  ALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
             ALE +F  F  G++          + SD+VP YEDKDGDWML+GDVPWE
Sbjct: 122 LKALEVMFK-FSVGEYF----ERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS009454 vs. TAIR 10
Match: AT1G52830.1 (indole-3-acetic acid 6 )

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-27
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 2   KGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDL 61
           K   VGWPPVCSYR+K        N  E   +  YVK+SMDG P++RK+DLGS   Y +L
Sbjct: 68  KSQAVGWPPVCSYRRKK-------NNEEASKAIGYVKVSMDGVPYMRKIDLGSSNSYINL 127

Query: 62  ALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
              LE LF C G G         K G+  +Y+ IYEDKD DWMLVGDVPW+
Sbjct: 128 VTVLENLFGCLGIG-------VAKEGKKCEYIIIYEDKDRDWMLVGDVPWQ 164

[Close]

BLAST of MS009454 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-27
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 2   KGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDL 61
           K  +VGWPPV SYRK     N +  ++E+E    YVK+SMDGAP+LRK+DL  +K YP+L
Sbjct: 60  KAQIVGWPPVRSYRK----NNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPEL 119

Query: 62  ALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
             +LE +F  F  G++       +  + SD+VP YEDKDGDWMLVGDVPWE
Sbjct: 120 MKSLENMFK-FSVGEYF----EREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

[Close]

BLAST of MS009454 vs. TAIR 10
Match: AT1G15580.1 (indole-3-acetic acid inducible 5 )

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-26
Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 2   KGHVVGWPPVCSYRKKNSFGNKELNENENENSKMYVKISMDGAPFLRKLDLGSHKGYPDL 61
           K  VVGWPPVCSYR+KNS                YVK+S+DGA FLRK+DL  +K Y DL
Sbjct: 51  KSQVVGWPPVCSYRRKNSL---------ERTKSSYVKVSVDGAAFLRKIDLEMYKCYQDL 110

Query: 62  ALALEKLFACFGTGKFLILWKTLKHGESSDYVPIYEDKDGDWMLVGDVPWE 113
           A AL+ LF C     ++    TLK    S+ VPIYEDKDGDWML GDVPWE
Sbjct: 111 ASALQILFGC-----YINFDDTLK---ESECVPIYEDKDGDWMLAGDVPWE 144

The following BLAST results are available for this feature:

BLAST of MS009454 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151308.1	1.8e-53	92.86	auxin-induced protein AUX22 [Momordica charantia]	[more]
XP_038899110.1	1.4e-48	86.49	auxin-induced protein AUX22-like [Benincasa hispida]	[more]
XP_004135828.1	5.2e-48	85.09	auxin-induced protein IAA6 [Cucumis sativus]	[more]
XP_023549188.1	1.7e-46	84.82	LOW QUALITY PROTEIN: auxin-induced protein AUX22-like [Cucurbita pepo subsp. pep...	[more]
KAG7014105.1	1.7e-46	84.82	Auxin-induced protein AUX22, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of MS009454 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P13088	1.9e-37	66.96	Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1	[more]
O24541	2.0e-34	61.61	Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 S...	[more]
P49680	3.4e-34	63.96	Auxin-induced protein IAA6 OS=Pisum sativum OX=3888 GN=IAA6 PE=2 SV=1	[more]
O24409	8.7e-30	57.89	Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=...	[more]
Q38822	8.1e-28	54.95	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]

BLAST of MS009454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBU7	8.9e-54	92.86	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111019270 PE=3 SV=...	[more]
A0A0A0KC02	2.5e-48	85.09	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_7G440550 PE=3 SV=1	[more]
A0A6J1GPU1	2.4e-46	83.93	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111456436 PE=3 SV=1	[more]
A0A6J1JTD7	6.9e-46	83.93	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111488703 PE=3 SV=1	[more]
A0A5D3CGF4	3.4e-45	80.00	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MS009454 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15540.1	6.2e-31	57.89	indole-3-acetic acid inducible 19	[more]
AT1G04240.1	5.8e-29	54.95	AUX/IAA transcriptional regulator family protein	[more]
AT1G52830.1	3.2e-27	50.45	indole-3-acetic acid 6	[more]
AT5G43700.1	3.2e-27	52.25	AUX/IAA transcriptional regulator family protein	[more]
AT1G15580.1	1.2e-26	54.95	indole-3-acetic acid inducible 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 28..112 e-value: 3.8E-28 score: 99.5
None	No IPR available	PANTHER	PTHR31734:SF87	AUXIN-RESPONSIVE PROTEIN IAA6	coord: 2..112
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 28..112
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 2..112 e-value: 5.7E-38 score: 131.1
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 2..112
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 34..112 score: 20.080349

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009454.1	MS009454.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding