MS009440 (gene) Bitter gourd (TR) v1

Overview


Name	MS009440
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L19, chloroplastic-like
Location	scaffold813: 1295822 .. 1296066 (-)
RNA-Seq Expression	MS009440
Synteny	MS009440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGTTTCGGTTATGCAGTTTTAAATCTAGACCGGAAATGCAAAGTTTCCGTAGAATTAATCAATTGGTACGAAGGAAAAGTCCAGATGCTCATTTCAAATCGATTAGAGGATACCCTGTTAATGGATCGGAGATGTTGGCTGTAGCTGCTCGGCGCCAATGTTGATGGAAAATGGTTTTGCTATTGCTCGTCTTTTTGGAAATCCATATGGGTCTTTCAGTGGTTCCTTCATCTCTAACTTC

mRNA sequence

ATTTTGTTTCGGTTATGCAGTTTTAAATCTAGACCGGAAATGCAAAGTTTCCGTAGAATTAATCAATTGGTACGAAGGAAAAGTCCAGATGCTCATTTCAAATCGATTAGAGGATACCCTGTTAATGGAGATGTTGGCTGTAGCTGCTCGGCGCCAATGTTGATGGAAAATGGTTTTGCTATTGCTCGTCTTTTTGGAAATCCATATGGGTCTTTCAGTGGTTCCTTCATCTCTAACTTC

Coding sequence (CDS)

ATTTTGTTTCGGTTATGCAGTTTTAAATCTAGACCGGAAATGCAAAGTTTCCGTAGAATTAATCAATTGGTACGAAGGAAAAGTCCAGATGCTCATTTCAAATCGATTAGAGGATACCCTGTTAATGGAGATGTTGGCTGTAGCTGCTCGGCGCCAATGTTGATGGAAAATGGTTTTGCTATTGCTCGTCTTTTTGGAAATCCATATGGGTCTTTCAGTGGTTCCTTCATCTCTAACTTC

Protein sequence

ILFRLCSFKSRPEMQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFSGSFISNF

Homology

[Close]

BLAST of MS009440 vs. NCBI nr
Match: XP_022154987.1 (uncharacterized protein LOC111022131 [Momordica charantia])

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQSFRRINQLVRRKSPDAHFKS RGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS
Sbjct: 1  MQSFRRINQLVRRKSPDAHFKSTRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 60

[Close]

BLAST of MS009440 vs. NCBI nr
Match: XP_022137703.1 (50S ribosomal protein L19, chloroplastic-like [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQSFRRINQLVRR+SPDAHFKSIRGYP+NGD GCSCSAPM MENGF IAR FGNPYGS +
Sbjct: 1  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAGCSCSAPMSMENGFTIARPFGNPYGSLN 60

Query: 74 GSFISNF 81
          GSF+ +F
Sbjct: 61 GSFLRSF 67

[Close]

BLAST of MS009440 vs. NCBI nr
Match: KAE8652777.1 (hypothetical protein Csa_022701 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 7.3e-20
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 8   FKSRPEMQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGN 67
           +KS  +MQ FRRINQLVRR+ PDA+FK IRGYP+NGD GCSCSAPM MEN F I  LFG 
Sbjct: 226 WKSSAKMQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGK 285

Query: 68  PYGSFSGSFISNF 81
            YGS  GSF+ +F
Sbjct: 286 SYGSLCGSFLRSF 298

[Close]

BLAST of MS009440 vs. NCBI nr
Match: XP_038896029.1 (uncharacterized protein LOC120084206 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 7.3e-20
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQ FRRINQLVRR+SPDAHFK IRGYP+NG+ GCSCS PMLMEN  AI+ LFGN Y SFS
Sbjct: 1  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGNAGCSCSTPMLMENSSAISCLFGNSYVSFS 60

Query: 74 GSFISNF 81
          GS + +F
Sbjct: 61 GSLLRSF 67

[Close]

BLAST of MS009440 vs. NCBI nr
Match: XP_008462642.1 (PREDICTED: 50S ribosomal protein L19, chloroplastic-like isoform X3 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQ FRRINQLVRR+SPDAHFK IRGYP+NGD  CSCSAPMLMEN F I  LFG  YGS S
Sbjct: 1  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDASCSCSAPMLMENSFTIPCLFGKSYGSLS 60

Query: 74 GSFISNF 81
          GS   +F
Sbjct: 61 GSLWRSF 67

[Close]

BLAST of MS009440 vs. ExPASy TrEMBL
Match: A0A6J1DN60 (uncharacterized protein LOC111022131 OS=Momordica charantia OX=3673 GN=LOC111022131 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.6e-26
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQSFRRINQLVRRKSPDAHFKS RGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS
Sbjct: 1  MQSFRRINQLVRRKSPDAHFKSTRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 60

[Close]

BLAST of MS009440 vs. ExPASy TrEMBL
Match: A0A6J1CB38 (50S ribosomal protein L19, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009074 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.2e-25
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQSFRRINQLVRR+SPDAHFKSIRGYP+NGD GCSCSAPM MENGF IAR FGNPYGS +
Sbjct: 1  MQSFRRINQLVRRQSPDAHFKSIRGYPLNGDAGCSCSAPMSMENGFTIARPFGNPYGSLN 60

Query: 74 GSFISNF 81
          GSF+ +F
Sbjct: 61 GSFLRSF 67

[Close]

BLAST of MS009440 vs. ExPASy TrEMBL
Match: A0A0A0LV41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-20
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 8   FKSRPEMQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGN 67
           +KS  +MQ FRRINQLVRR+ PDA+FK IRGYP+NGD GCSCSAPM MEN F I  LFG 
Sbjct: 132 WKSSAKMQGFRRINQLVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGK 191

Query: 68  PYGSFSGSFISNF 81
            YGS  GSF+ +F
Sbjct: 192 SYGSLCGSFLRSF 204

[Close]

BLAST of MS009440 vs. ExPASy TrEMBL
Match: A0A1S3CHC3 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.9e-20
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQ FRRINQLVRR+SPDAHFK IRGYP+NGD  CSCSAPMLMEN F I  LFG  YGS S
Sbjct: 1  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDASCSCSAPMLMENSFTIPCLFGKSYGSLS 60

Query: 74 GSFISNF 81
          GS   +F
Sbjct: 61 GSLWRSF 67

[Close]

BLAST of MS009440 vs. ExPASy TrEMBL
Match: A0A1S3CHY3 (50S ribosomal protein L19, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.9e-20
Identity = 50/67 (74.63%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 14 MQSFRRINQLVRRKSPDAHFKSIRGYPVNGDVGCSCSAPMLMENGFAIARLFGNPYGSFS 73
          MQ FRRINQLVRR+SPDAHFK IRGYP+NGD  CSCSAPMLMEN F I  LFG  YGS S
Sbjct: 1  MQGFRRINQLVRRQSPDAHFKLIRGYPLNGDASCSCSAPMLMENSFTIPCLFGKSYGSLS 60

Query: 74 GSFISNF 81
          GS   +F
Sbjct: 61 GSLWRSF 67

The following BLAST results are available for this feature:

BLAST of MS009440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154987.1	1.2e-25	98.33	uncharacterized protein LOC111022131 [Momordica charantia]	[more]
XP_022137703.1	1.3e-24	83.58	50S ribosomal protein L19, chloroplastic-like [Momordica charantia]	[more]
KAE8652777.1	7.3e-20	68.49	hypothetical protein Csa_022701 [Cucumis sativus]	[more]
XP_038896029.1	7.3e-20	74.63	uncharacterized protein LOC120084206 [Benincasa hispida]	[more]
XP_008462642.1	1.6e-19	74.63	PREDICTED: 50S ribosomal protein L19, chloroplastic-like isoform X3 [Cucumis mel...	[more]

BLAST of MS009440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN60	5.6e-26	98.33	uncharacterized protein LOC111022131 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CB38	6.2e-25	83.58	50S ribosomal protein L19, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LV41	3.5e-20	68.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1	[more]
A0A1S3CHC3	7.9e-20	74.63	50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S3CHY3	7.9e-20	74.63	50S ribosomal protein L19, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656...	[more]

BLAST of MS009440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009440.1	MS009440.1	mRNA