MS009434 (gene) Bitter gourd (TR) v1

Overview


Name	MS009434
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	(6-4)DNA photolyase
Location	scaffold813: 1258720 .. 1259058 (-)
RNA-Seq Expression	MS009434
Synteny	MS009434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCAATCTCCCCGTTTTCCACCCCCTTCCGATCAGAGCTTCTTCTTCTTCCTCTGCAAAATCCGAGCCTAATCGCCGGAAGGCCGCCGCGCCGAAGTGGTGGTCACCGATCTTCGGATGGTCGTCCGAGCCGGACTACGTCGCCGGTTCCGCCGCCGAGCCGGAGCACGAGACCGGACGAGTGAGATCCAGATTCACGCCCGGCTGCTTCACGGAGGAGAAGGCGAAGCTGCTCCGCATGAAGACGCTGGAGAGCTCCACATTCCATGATATTATGTACCATTCCGCGATCGCGTCGCGTCTCGCCTCCGATTTGTCGGACAGATCAGCTAAG

mRNA sequence

ATGGCGACCAATCTCCCCGTTTTCCACCCCCTTCCGATCAGAGCTTCTTCTTCTTCCTCTGCAAAATCCGAGCCTAATCGCCGGAAGGCCGCCGCGCCGAAGTGGTGGTCACCGATCTTCGGATGGTCGTCCGAGCCGGACTACGTCGCCGGTTCCGCCGCCGAGCCGGAGCACGAGACCGGACGAGTGAGATCCAGATTCACGCCCGGCTGCTTCACGGAGGAGAAGGCGAAGCTGCTCCGCATGAAGACGCTGGAGAGCTCCACATTCCATGATATTATGTACCATTCCGCGATCGCGTCGCGTCTCGCCTCCGATTTGTCGGACAGATCAGCTAAG

Coding sequence (CDS)

ATGGCGACCAATCTCCCCGTTTTCCACCCCCTTCCGATCAGAGCTTCTTCTTCTTCCTCTGCAAAATCCGAGCCTAATCGCCGGAAGGCCGCCGCGCCGAAGTGGTGGTCACCGATCTTCGGATGGTCGTCCGAGCCGGACTACGTCGCCGGTTCCGCCGCCGAGCCGGAGCACGAGACCGGACGAGTGAGATCCAGATTCACGCCCGGCTGCTTCACGGAGGAGAAGGCGAAGCTGCTCCGCATGAAGACGCTGGAGAGCTCCACATTCCATGATATTATGTACCATTCCGCGATCGCGTCGCGTCTCGCCTCCGATTTGTCGGACAGATCAGCTAAG

Protein sequence

MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAEPEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK

Homology

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BLAST of MS009434 vs. NCBI nr
Match: XP_022150506.1 (uncharacterized protein LOC111018639 [Momordica charantia])

HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAEPEHET 60
           MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAEPEHET
Sbjct: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAEPEHET 60

Query: 61  GRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK 114
           GRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK
Sbjct: 61  GRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK 113

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BLAST of MS009434 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 3.5e-44
Identity = 100/120 (83.33%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSA------- 60
           MATNL VFHP PIRA  SSS KSEPNRRKA APKWWSPIFGWSSEPDYV  SA       
Sbjct: 1   MATNLAVFHPAPIRA--SSSGKSEPNRRKATAPKWWSPIFGWSSEPDYVLSSAAEQSVLN 60

Query: 61  AEPEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK 114
           AEPE E GR RSRF PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS K
Sbjct: 61  AEPELEGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 118

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BLAST of MS009434 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 95/118 (80.51%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSA------- 60
           MATNLPVFH  PIRA  SSS KSEPNRRKAAAPKWWSPIFGWSSEPDY+  SA       
Sbjct: 1   MATNLPVFHVAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AEPEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 112
           A+PE + GR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  ADPELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 116

[Close]

BLAST of MS009434 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 95/118 (80.51%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSA------- 60
           MATNLPVFH  PIRA  SSS KSEPNRRKAAAPKWWSPIFGWSSEPDY+  SA       
Sbjct: 1   MATNLPVFHAAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AEPEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 112
           A+PE + GR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  ADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 116

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BLAST of MS009434 vs. NCBI nr
Match: XP_023514525.1 (uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 95/118 (80.51%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSA------- 60
           MATNLPVFH  PIRA  SSS KSEPNRRKAAAPKWWSPIFGWSSEPDY+  SA       
Sbjct: 1   MATNLPVFHVAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQN 60

Query: 61  AEPEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 112
           A+PE + GR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  ADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 116

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BLAST of MS009434 vs. ExPASy TrEMBL
Match: A0A6J1DBP9 (uncharacterized protein LOC111018639 OS=Momordica charantia OX=3673 GN=LOC111018639 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAEPEHET 60
           MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAEPEHET
Sbjct: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAEPEHET 60

Query: 61  GRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK 114
           GRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK
Sbjct: 61  GRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSAK 113

[Close]

BLAST of MS009434 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.5e-43
Identity = 95/118 (80.51%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSA------- 60
           MATNLPVFH  PIRA  SSS KSEPNRRKAAAPKWWSPIFGWSSEPDY+  SA       
Sbjct: 1   MATNLPVFHVAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AEPEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 112
           A+PE + GR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  ADPELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 116

[Close]

BLAST of MS009434 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 95/118 (80.51%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSSSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSA------- 60
           MATNLPVFH  PIRA  SSS KSEPNRRKAAAPKWWSPIFGWSSEPDY+  SA       
Sbjct: 1   MATNLPVFHAAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AEPEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 112
           A+PE + GR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  ADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 116

[Close]

BLAST of MS009434 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 97/122 (79.51%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSS-SSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAE---- 60
           MATN  VFHP PIRASSS SS KS+PNRR AA PKWWSPIFGWSSEPDYV  SAAE    
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  ----PEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 114
               PE + GR  SRF PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of MS009434 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 97/122 (79.51%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MATNLPVFHPLPIRASSS-SSAKSEPNRRKAAAPKWWSPIFGWSSEPDYVAGSAAE---- 60
           MATN  VFHP PIRASSS SS KS+PNRR AA PKWWSPIFGWSSEPDYV  SAAE    
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  ----PEHETGRVRSRFTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 114
               PE + GR  SRF PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of MS009434 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 13  IRASS-SSSAKSEPNRRKAAAPKWWSPIFGWSSEPDYV----AGSAAEPEH-ETGRVRSR 72
           IRASS S S   + NR+K+AA  WW+P+FG  S+PDY+    + S   P+  +      +
Sbjct: 13  IRASSGSGSLNPDQNRKKSAA--WWAPLFGLPSDPDYLNIESSCSTVNPDKTDISGSGQK 72

Query: 73  FTPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDR 111
           F  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD++ R
Sbjct: 73  FRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGR 114

[Close]

BLAST of MS009434 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 15  ASSSSSAKSEPNRRK-AAAPKWWSPIFGWSSEPDYVAGSAAEPEHETGRVRSRFTPGCFT 74
           +S  +S++S+P R+K  ++  WW+P+FG SSEPDYV       E +  +   R    C T
Sbjct: 11  SSIRASSESDPARKKPVSSVSWWAPLFGMSSEPDYV-NKTVNLESDLDKAEKRSLRCCLT 70

Query: 75  EEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 108
           EEKAK LR KT E+STFHD+MYHSAIASRLASD+
Sbjct: 71  EEKAKQLRRKTAEASTFHDVMYHSAIASRLASDV 103

The following BLAST results are available for this feature:

BLAST of MS009434 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150506.1	5.2e-56	100.00	uncharacterized protein LOC111018639 [Momordica charantia]	[more]
XP_038898524.1	3.5e-44	83.33	uncharacterized protein LOC120086132 [Benincasa hispida]	[more]
XP_023004861.1	1.1e-42	80.51	uncharacterized protein LOC111498038 [Cucurbita maxima]	[more]
XP_022960101.1	1.5e-42	80.51	uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothet...	[more]
XP_023514525.1	1.9e-42	80.51	uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS009434 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBP9	2.5e-56	100.00	uncharacterized protein LOC111018639 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1KTB2	5.5e-43	80.51	uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038...	[more]
A0A6J1H6P9	7.2e-43	80.51	uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC1114609...	[more]
A0A5D3CF29	1.2e-42	79.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEC0	1.2e-42	79.51	uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=...	[more]

BLAST of MS009434 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52720.1	2.0e-21	54.81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15630.1	3.8e-20	53.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR34198:SF12	BNAA05G35680D PROTEIN	coord: 1..112
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009434.1	MS009434.1	mRNA