MS009418 (gene) Bitter gourd (TR) v1

Overview


Name	MS009418
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF761 domain-containing protein
Location	scaffold813: 1186611 .. 1186856 (-)
RNA-Seq Expression	MS009418
Synteny	MS009418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAACTCTGCAGCAGCTATTTCTGCCGGCGGCGGCCGTTGGGCGGAGGAAACCACCGCCGCGAAAGAAAAGCAGGCACCGGCGCCACCTCACCGGCCGGTGAAGAAGCAGCTGGAGAGGACGGTGACGGAGGACGTTAATGAAAGTGCGGAAGCTTTCATCAAGAAGTTCAGAAATCAACTCTTGATTCAAAGGCTTGATTCCATTGAGAATTACCAGAAAATGCTCGCCGGAGAAACC

mRNA sequence

ATGAAGAAGAACTCTGCAGCAGCTATTTCTGCCGGCGGCGGCCGTTGGGCGGAGGAAACCACCGCCGCGAAAGAAAAGCAGGCACCGGCGCCACCTCACCGGCCGGTGAAGAAGCAGCTGGAGAGGACGGTGACGGAGGACGTTAATGAAAGTGCGGAAGCTTTCATCAAGAAGTTCAGAAATCAACTCTTGATTCAAAGGCTTGATTCCATTGAGAATTACCAGAAAATGCTCGCCGGAGAAACC

Coding sequence (CDS)

ATGAAGAAGAACTCTGCAGCAGCTATTTCTGCCGGCGGCGGCCGTTGGGCGGAGGAAACCACCGCCGCGAAAGAAAAGCAGGCACCGGCGCCACCTCACCGGCCGGTGAAGAAGCAGCTGGAGAGGACGGTGACGGAGGACGTTAATGAAAGTGCGGAAGCTTTCATCAAGAAGTTCAGAAATCAACTCTTGATTCAAAGGCTTGATTCCATTGAGAATTACCAGAAAATGCTCGCCGGAGAAACC

Protein sequence

MKKNSAAAISAGGGRWAEETTAAKEKQAPAPPHRPVKKQLERTVTEDVNESAEAFIKKFRNQLLIQRLDSIENYQKMLAGET

Homology

[Close]

BLAST of MS009418 vs. NCBI nr
Match: KGN45285.1 (hypothetical protein Csa_016012 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1   MKKNS-AAAISAGGGRWAEETTAAKEKQAPAPPHRPV------KKQLER--TVTEDVNES 60
           MKKNS   A+SA GG          + Q P  P  P+      +++LER  TVTEDVNES
Sbjct: 19  MKKNSELPAVSAAGG--------INKLQPPPCPSSPLRFCGGERRKLERTVTVTEDVNES 78

Query: 61  AEAFIKKFRNQLLIQRLDSIENYQKMLAGET 83
           AEAFI+KFRNQLLIQRL SIENY+K+LAGET
Sbjct: 79  AEAFIQKFRNQLLIQRLQSIENYEKILAGET 101

[Close]

BLAST of MS009418 vs. NCBI nr
Match: KAG6575588.1 (hypothetical protein SDJN03_26227, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014129.1 hypothetical protein SDJN02_24302, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-11
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MKKNSAAAISAGGGRWAEETTAAKEKQAPAPPHRPVKKQLERT------VTEDVNESAEA 60
          MK  S    SA     A     + ++Q P PP R  + ++E+T      VTEDVNESAEA
Sbjct: 1  MKNTSQPPFSA-----AAAAAGSCKQQQPPPPPRQERTKMEKTPTVTVSVTEDVNESAEA 60

Query: 61 FIKKFRNQLLIQRLDSIENYQKMLAGET 83
          FIK+FRNQLLIQRL SIENY+K+LAGET
Sbjct: 61 FIKRFRNQLLIQRLQSIENYEKILAGET 83

[Close]

BLAST of MS009418 vs. NCBI nr
Match: KAA0058765.1 (DUF761 domain-containing protein [Cucumis melo var. makuwa] >TYK10559.1 DUF761 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09
Identity = 49/93 (52.69%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 1  MKKNS-AAAISAGGGRWAEETTAAKEKQAPAPPHRPV------KKQLER----TVTEDVN 60
          MKK+S    +SA  G          + Q P  P  P+      +++LER    TVTEDV+
Sbjct: 1  MKKSSELPTVSAAAG-------GINKLQPPPSPSSPLRGCGGERRKLERTVTVTVTEDVD 60

Query: 61 ESAEAFIKKFRNQLLIQRLDSIENYQKMLAGET 83
          ESAEAFIKKFRNQLLIQRL SIENY+++LAGET
Sbjct: 61 ESAEAFIKKFRNQLLIQRLQSIENYERILAGET 86

[Close]

BLAST of MS009418 vs. NCBI nr
Match: KAB2611398.1 (hypothetical protein D8674_019430 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 23 AKEKQAPAPPHRPVKKQLERTVTEDVNESAEAFIKKFRNQLLIQRLDSIENYQKMLAG 81
          A  K+  AP      K+LER  TED+NESAEAFIKKFR QLLIQRL+SIENY++MLAG
Sbjct: 42 ANNKEETAP------KKLERKSTEDINESAEAFIKKFRKQLLIQRLESIENYEQMLAG 93

[Close]

BLAST of MS009418 vs. NCBI nr
Match: EEF44769.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 35 PVKKQLERTVTEDVNESAEAFIKKFRNQLLIQRLDSIENYQKMLAGET 83
          P +KQLE   + D+NESAEAFIKKFR QLLIQRL+SIENY+KMLA E+
Sbjct: 50 PPQKQLESKPSVDINESAEAFIKKFRKQLLIQRLESIENYEKMLARES 97

[Close]

BLAST of MS009418 vs. ExPASy TrEMBL
Match: A0A0A0K6D1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433160 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1   MKKNS-AAAISAGGGRWAEETTAAKEKQAPAPPHRPV------KKQLER--TVTEDVNES 60
           MKKNS   A+SA GG          + Q P  P  P+      +++LER  TVTEDVNES
Sbjct: 19  MKKNSELPAVSAAGG--------INKLQPPPCPSSPLRFCGGERRKLERTVTVTEDVNES 78

Query: 61  AEAFIKKFRNQLLIQRLDSIENYQKMLAGET 83
           AEAFI+KFRNQLLIQRL SIENY+K+LAGET
Sbjct: 79  AEAFIQKFRNQLLIQRLQSIENYEKILAGET 101

[Close]

BLAST of MS009418 vs. ExPASy TrEMBL
Match: A0A5D3CK25 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002120 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 49/93 (52.69%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 1  MKKNS-AAAISAGGGRWAEETTAAKEKQAPAPPHRPV------KKQLER----TVTEDVN 60
          MKK+S    +SA  G          + Q P  P  P+      +++LER    TVTEDV+
Sbjct: 1  MKKSSELPTVSAAAG-------GINKLQPPPSPSSPLRGCGGERRKLERTVTVTVTEDVD 60

Query: 61 ESAEAFIKKFRNQLLIQRLDSIENYQKMLAGET 83
          ESAEAFIKKFRNQLLIQRL SIENY+++LAGET
Sbjct: 61 ESAEAFIKKFRNQLLIQRLQSIENYERILAGET 86

[Close]

BLAST of MS009418 vs. ExPASy TrEMBL
Match: A0A5N5G7Z8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019430 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 23 AKEKQAPAPPHRPVKKQLERTVTEDVNESAEAFIKKFRNQLLIQRLDSIENYQKMLAG 81
          A  K+  AP      K+LER  TED+NESAEAFIKKFR QLLIQRL+SIENY++MLAG
Sbjct: 42 ANNKEETAP------KKLERKSTEDINESAEAFIKKFRKQLLIQRLESIENYEQMLAG 93

[Close]

BLAST of MS009418 vs. ExPASy TrEMBL
Match: B9RV36 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0898820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.4e-09
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 35 PVKKQLERTVTEDVNESAEAFIKKFRNQLLIQRLDSIENYQKMLAGET 83
          P +KQLE   + D+NESAEAFIKKFR QLLIQRL+SIENY+KMLA E+
Sbjct: 50 PPQKQLESKPSVDINESAEAFIKKFRKQLLIQRLESIENYEKMLARES 97

[Close]

BLAST of MS009418 vs. ExPASy TrEMBL
Match: M5WWR7 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G082000 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 37 KKQLERTVTEDVNESAEAFIKKFRNQLLIQRLDSIENYQKMLA 80
          K +LER  TED+NESAEAFIKKFR QLLIQRL+SIENY++MLA
Sbjct: 49 KNKLERKSTEDINESAEAFIKKFRKQLLIQRLESIENYEQMLA 91

[Close]

BLAST of MS009418 vs. TAIR 10
Match: AT1G15385.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-07
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 36 VKKQLERTVTEDVNESAEAFIKKFRNQLLIQRLDSIEN 74
          + K++ER  + DV++SAEAFI KFRNQLL+QRL+SIEN
Sbjct: 30 MNKKVERKASMDVDKSAEAFITKFRNQLLLQRLESIEN 67

[Close]

BLAST of MS009418 vs. TAIR 10
Match: AT4G26130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56980.1); Has 121 Blast hits to 116 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 33/86 (38.37%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 2   KKNSAAAISAGGGRWAEETTAAKEKQAPAPPHRPVKKQLERTVT------EDVNESAEAF 61
           KK   +A     GR  EET  A EK+      RP   ++ERT +      E V++ A  F
Sbjct: 207 KKMMKSASERHIGREEEETVEAVEKR------RPETMRVERTTSIGDGGEEGVDDKASNF 266

Query: 62  IKKFRNQLLIQRLDSIENYQKMLAGE 82
           I KF+ QL +QRLDS   Y++ML  +
Sbjct: 267 INKFKQQLKLQRLDSFLRYREMLKND 286

[Close]

BLAST of MS009418 vs. TAIR 10
Match: AT5G54300.1 (Protein of unknown function (DUF761) )

HSP 1 Score: 40.4 bits (93), Expect = 8.0e-04
Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 46  EDVNESAEAFIKKFRNQLLIQRLDSIENYQKMLAGET 83
           E++N   EAFIKKF  ++ +QRL+S+  Y +M+ G T
Sbjct: 288 EELNRRVEAFIKKFNEEMRLQRLESLAKYNEMVNGGT 324

The following BLAST results are available for this feature:

BLAST of MS009418 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45285.1	2.8e-11	58.24	hypothetical protein Csa_016012 [Cucumis sativus]	[more]
KAG6575588.1	4.9e-11	54.55	hypothetical protein SDJN03_26227, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0058765.1	4.5e-09	52.69	DUF761 domain-containing protein [Cucumis melo var. makuwa] >TYK10559.1 DUF761 d...	[more]
KAB2611398.1	4.5e-09	67.24	hypothetical protein D8674_019430 [Pyrus ussuriensis x Pyrus communis]	[more]
EEF44769.1	1.7e-08	72.92	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of MS009418 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009418 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D1	1.4e-11	58.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433160 PE=4 SV=1	[more]
A0A5D3CK25	2.2e-09	52.69	DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5N5G7Z8	2.2e-09	67.24	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
B9RV36	8.4e-09	72.92	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0898820 PE=4 SV=1	[more]
M5WWR7	1.4e-08	79.07	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G082000 PE=4 SV=1	[more]

BLAST of MS009418 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15385.1	2.7e-07	65.79	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761,...	[more]
AT4G26130.1	1.6e-04	38.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G54300.1	8.0e-04	45.95	Protein of unknown function (DUF761)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 46..79 e-value: 1.5E-16 score: 59.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 34..81
None	No IPR available	PANTHER	PTHR33098:SF82	DUF761 DOMAIN PROTEIN	coord: 34..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009418.1	MS009418.1	mRNA