MS009416 (gene) Bitter gourd (TR) v1

Overview
NameMS009416
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold813: 1170313 .. 1170458 (-)
RNA-Seq ExpressionMS009416
SyntenyMS009416
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCTTAAGCTAACCTATCCGAAAGAGAATCTAGTCTTTCTTGGTCGTGAATATCTGAATAGAACGAATCGTCTTGTGGTTTGCTTCGAAACAAAATAATTAGAATTAGGTCGGTCAACTGGAATGTGTATTATCCATATAGGGGA

mRNA sequence

CATCTTAAGCTAACCTATCCGAAAGAGAATCTAGTCTTTCTTGGTCGTGAATATCTGAATAGAACGAATCGTCTTGTGGTTTGCTTCGAAACAAAAATTAGAATTAGGTCGGTCAACTGGAATGTGTATTATCCATATAGGGGA

Coding sequence (CDS)

CATCTTAAGCTAACCTATCCGAAAGAGAATCTAGTCTTTCTTGGTCGTGAATATCTGAATAGAACGAATCGTCTTGTGGTTTGCTTCGAAACAAAAATTAGAATTAGGTCGGTCAACTGGAATGTGTATTATCCATATAGGGGA

Protein sequence

HLKLTYPKENLVFLGREYLNRTNRLVVCFETKIRIRSVNWNVYYPYRG
Homology
[Close]
BLAST of MS009416 vs. NCBI nr
Match: QIB71948.1 (hypothetical protein [Fagonia indica])

HSP 1 Score: 63.2 bits (152), Expect = 7.2e-07
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 4  LTYPKENLVFLGREYLNRTNR---LVVCFETK-IRIRSVNWNVYYPYRG 49
          L+  +EN V +GREYLNRTN    L VCF TK + + SVNWNVYYPYRG
Sbjct: 37 LSEKRENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRG 85

[Close]
BLAST of MS009416 vs. ExPASy TrEMBL
Match: A0A0A0LBC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 6  YPKENLVFLGREYLNRTNRLVVCFETK-IRIRSVNWNVYYPYRG 49
          YPKEN VFLGREYLNRTNR VVCF TK + + S+NWNVYYPYRG
Sbjct: 9  YPKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRG 52

[Close]
BLAST of MS009416 vs. ExPASy TrEMBL
Match: A0A6C0UA12 (Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-07
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 4  LTYPKENLVFLGREYLNRTNR---LVVCFETK-IRIRSVNWNVYYPYRG 49
          L+  +EN V +GREYLNRTN    L VCF TK + + SVNWNVYYPYRG
Sbjct: 37 LSEKRENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRG 85

The following BLAST results are available for this feature:
BLAST of MS009416 vs. NCBI nr
Match NameE-valueIdentityDescription
QIB71948.17.2e-0763.27hypothetical protein [Fagonia indica][more]
BLAST of MS009416 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS009416 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBC94.0e-1179.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1[more]
A0A6C0UA123.5e-0763.27Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1[more]
BLAST of MS009416 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009416.1MS009416.1mRNA