MS009398 (gene) Bitter gourd (TR) v1

Overview
NameMS009398
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein TAR1
Locationscaffold813: 1051752 .. 1051820 (-)
RNA-Seq ExpressionMS009398
SyntenyMS009398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTCGCGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGAGCCTGGCACTTGCCCCGT

mRNA sequence

GGCTCGCGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGAGCCTGGCACTTGCCCCGT

Coding sequence (CDS)

GGCTCGCGCCCAAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGGAGCCTGGCACTTGCCCCGT

Protein sequence

GSRPRFCSDRRALLLIGAWHLPR
Homology
[Close]
BLAST of MS009398 vs. NCBI nr
Match: KAG6654575.1 (hypothetical protein CIPAW_05G155000 [Carya illinoinensis])

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1   GSRPRFCSDRRALLLIGAWHLPR 24
           GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 223 GSRPRFCSDRRALLLIGAWHLPR 245

[Close]
BLAST of MS009398 vs. NCBI nr
Match: PHT96515.1 (Protein TAR1 [Capsicum chinense])

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1  GSRPRFCSDRRALLLIGAWHLPR 24
          GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 37 GSRPRFCSDRRALLLIGAWHLPR 59

[Close]
BLAST of MS009398 vs. NCBI nr
Match: KAG6627075.1 (hypothetical protein CIPAW_15G098800 [Carya illinoinensis])

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1   GSRPRFCSDRRALLLIGAWHLPR 24
           GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 366 GSRPRFCSDRRALLLIGAWHLPR 388

[Close]
BLAST of MS009398 vs. NCBI nr
Match: KAG6627153.1 (hypothetical protein CIPAW_15G106600 [Carya illinoinensis])

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1   GSRPRFCSDRRALLLIGAWHLPR 24
           GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 603 GSRPRFCSDRRALLLIGAWHLPR 625

[Close]
BLAST of MS009398 vs. NCBI nr
Match: KAG6627067.1 (hypothetical protein CIPAW_15G098000, partial [Carya illinoinensis] >KAG6627068.1 hypothetical protein CIPAW_15G098100, partial [Carya illinoinensis])

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1   GSRPRFCSDRRALLLIGAWHLPR 24
           GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 141 GSRPRFCSDRRALLLIGAWHLPR 163

[Close]
BLAST of MS009398 vs. ExPASy TrEMBL
Match: A0A5N6QWM5 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007806 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1  GSRPRFCSDRRALLLIGAWHLPR 24
          GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 37 GSRPRFCSDRRALLLIGAWHLPR 59

[Close]
BLAST of MS009398 vs. ExPASy TrEMBL
Match: A0A6J5WQM7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21175 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1  GSRPRFCSDRRALLLIGAWHLPR 24
          GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 37 GSRPRFCSDRRALLLIGAWHLPR 59

[Close]
BLAST of MS009398 vs. ExPASy TrEMBL
Match: A0A2G2UY81 (Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_34696 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1  GSRPRFCSDRRALLLIGAWHLPR 24
          GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 37 GSRPRFCSDRRALLLIGAWHLPR 59

[Close]
BLAST of MS009398 vs. ExPASy TrEMBL
Match: A0A2G2V1Z6 (Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_33366 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1  GSRPRFCSDRRALLLIGAWHLPR 24
          GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 37 GSRPRFCSDRRALLLIGAWHLPR 59

[Close]
BLAST of MS009398 vs. ExPASy TrEMBL
Match: A0A2G2V0X4 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33729 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 1  GSRPRFCSDRRALLLIGAWHLPR 24
          GSRPRFCSDRRALLLIGAWHLPR
Sbjct: 37 GSRPRFCSDRRALLLIGAWHLPR 59

The following BLAST results are available for this feature:
BLAST of MS009398 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6654575.19.5e-05100.00hypothetical protein CIPAW_05G155000 [Carya illinoinensis][more]
PHT96515.19.5e-05100.00Protein TAR1 [Capsicum chinense][more]
KAG6627075.19.5e-05100.00hypothetical protein CIPAW_15G098800 [Carya illinoinensis][more]
KAG6627153.19.5e-05100.00hypothetical protein CIPAW_15G106600 [Carya illinoinensis][more]
KAG6627067.19.5e-05100.00hypothetical protein CIPAW_15G098000, partial [Carya illinoinensis] >KAG6627068.... [more]
BLAST of MS009398 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS009398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6QWM54.6e-05100.00Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007806 PE=4 SV=1[more]
A0A6J5WQM74.6e-05100.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21175 PE=... [more]
A0A2G2UY814.6e-05100.00Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_34696 PE=4 SV=1[more]
A0A2G2V1Z64.6e-05100.00Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_33366 PE=4 SV=1[more]
A0A2G2V0X44.6e-05100.00Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33729 PE=4 SV=1[more]
BLAST of MS009398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009398.1MS009398.1mRNA