MS009397 (gene) Bitter gourd (TR) v1

Overview


Name	MS009397
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome b6
Location	scaffold813: 1042838 .. 1043059 (+)
RNA-Seq Expression	MS009397
Synteny	MS009397

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTTACAGGTGTGATTCTGGTTGTATTGACCGTATCCTTTGGTGTAATTGGTTATTCCTTACCTTGGGACCAAATTGGTTATAGAGCAGTCAAAATTGTAATAGGTGTACCGAAAGCTATTCCAATAATAGGGTCACATTTGATAGAATTATTATGCGGAAGTGCTAGTGTGAGACAATCTACCTTGACTCGTTTTTATAGTTTAAACACTTTAACTTTT

mRNA sequence

TGGGTTACAGGTGTGATTCTGGTTGTATTGACCGTATCCTTTGGTGTAATTGGTTATTCCTTACCTTGGGACCAAATTGGTTATAGAGCAGTCAAAATTGTAATAGGTGTACCGAAAGCTATTCCAATAATAGGGTCACATTTGATAGAATTATTATGCGGAAGTGCTAGTGTGAGACAATCTACCTTGACTCGTTTTTATAGTTTAAACACTTTAACTTTT

Coding sequence (CDS)

TGGGTTACAGGTGTGATTCTGGTTGTATTGACCGTATCCTTTGGTGTAATTGGTTATTCCTTACCTTGGGACCAAATTGGTTATAGAGCAGTCAAAATTGTAATAGGTGTACCGAAAGCTATTCCAATAATAGGGTCACATTTGATAGAATTATTATGCGGAAGTGCTAGTGTGAGACAATCTACCTTGACTCGTTTTTATAGTTTAAACACTTTAACTTTT

Protein sequence

WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQSTLTRFYSLNTLTF

Homology

[Close]

BLAST of MS009397 vs. NCBI nr
Match: PNT67432.1 (hypothetical protein BRADI_3g27315v3 [Brachypodium distachyon])

HSP 1 Score: 118.2 bits (295), Expect = 2.9e-23
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELLCGSASV Q
Sbjct: 65  WVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLCGSASVGQ 124

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 125 STLTRFYSLHT 135

[Close]

BLAST of MS009397 vs. NCBI nr
Match: YP_009490514.1 (cytochrome b6 [Cibotium barometz] >AWH62732.1 cytochrome b6 [Cibotium barometz])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 120 WVTGVILAVLTVSFGVTGYSLPWDQIGYRAVKIVTGVPEAIPLIGSSLVELLRGSVSVGQ 179

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 180 STLTRFYSLHT 190

[Close]

BLAST of MS009397 vs. NCBI nr
Match: YP_009502347.1 (cytochrome b6 [Alsophila podophylla] >YP_009679346.1 cytochrome b6 [Alsophila gigantea] >AWV63397.1 cytochrome b6 [Alsophila podophylla] >QDP70896.1 cytochrome b6 [Alsophila gigantea] >QXU59522.1 cytochrome b6 [Alsophila metteniana])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYRAVKIVTGVPEAIPLIGSSLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. NCBI nr
Match: QZN05751.1 (cytochrome b6 [Alsophila denticulata])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 109 WVTGVILAVLTVSFGVTGYSLPWDQIGYRAVKIVTGVPEAIPLIGSSLVELLRGSVSVGQ 168

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 169 STLTRFYSLHT 179

[Close]

BLAST of MS009397 vs. NCBI nr
Match: YP_002970674.1 (cytochrome b6 [Alsophila spinulosa] >YP_009679435.1 cytochrome b6 [Alsophila costularis] >ACK77166.1 cytochrome b6 [Alsophila spinulosa] >QDP70978.1 cytochrome b6 [Alsophila costularis] >QUJ10087.1 cytochrome b6 [Alsophila latebrosa])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYRAVKIVTGVPEAIPLIGSSLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy Swiss-Prot
Match: P06248 (Cytochrome b6 OS=Marchantia polymorpha OX=3197 GN=petB PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-25
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIPIIGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPIIGSPLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy Swiss-Prot
Match: Q3BAK7 (Cytochrome b6 OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=petB PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-25
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP+AIPIIGS L+ELL GSASV Q
Sbjct: 118 WVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPIIGSPLVELLRGSASVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy Swiss-Prot
Match: Q85X07 (Cytochrome b6 OS=Pinus koraiensis OX=88728 GN=petB PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-25
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy Swiss-Prot
Match: P41628 (Cytochrome b6 OS=Pinus thunbergii OX=3350 GN=petB PE=3 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-25
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy Swiss-Prot
Match: Q85A24 (Cytochrome b6 OS=Anthoceros angustus OX=48387 GN=petB PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.5e-25
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGY AVKIV GVP+AIP++GS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPLVGSSLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy TrEMBL
Match: A0A2K2CZH6 (CYTB_NTER domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_3g27315v3 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELLCGSASV Q
Sbjct: 65  WVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLCGSASVGQ 124

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 125 STLTRFYSLHT 135

[Close]

BLAST of MS009397 vs. ExPASy TrEMBL
Match: A0A287WHJ4 (CYTB_NTER domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-23
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELLCGSASV Q
Sbjct: 75  WVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLCGSASVGQ 134

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 135 STLTRFYSLHT 145

[Close]

BLAST of MS009397 vs. ExPASy TrEMBL
Match: A0A7L8XKV7 (Cytochrome b6 OS=Sphaeropteris brunoniana OX=204593 GN=petB PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYRAVKIVTGVPEAIPLIGSSLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy TrEMBL
Match: A0A344AIQ6 (Cytochrome b6 OS=Alsophila podophylla OX=204585 GN=petB PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYRAVKIVTGVPEAIPLIGSSLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. ExPASy TrEMBL
Match: C5HY84 (Cytochrome b6 OS=Alsophila spinulosa OX=204586 GN=petB PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-23
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGVIL VLTVSFGV GYSLPWDQIGYRAVKIV GVP+AIP+IGS L+ELL GS SV Q
Sbjct: 118 WVTGVILAVLTVSFGVTGYSLPWDQIGYRAVKIVTGVPEAIPLIGSSLVELLRGSVSVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. TAIR 10
Match: ATCG00720.1 (photosynthetic electron transfer B )

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-25
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           WVTGV+L VLT SFGV GYSLPWDQIGY AVKIV GVP AIP+IGS L+ELL GSASV Q
Sbjct: 118 WVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQ 177

Query: 61  STLTRFYSLNT 72
           STLTRFYSL+T
Sbjct: 178 STLTRFYSLHT 188

[Close]

BLAST of MS009397 vs. TAIR 10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal )

HSP 1 Score: 57.0 bits (136), Expect = 7.5e-09
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           W  GV++ +L +    IGY LPW Q+ +    ++  +  AIP++G  ++  L G  SV  
Sbjct: 120 WCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDN 179

Query: 61  STLTRFYSLNTL 73
           +TL RF+SL+ L
Sbjct: 180 ATLNRFFSLHHL 191

[Close]

BLAST of MS009397 vs. TAIR 10
Match: ATMG00220.1 (apocytochrome b )

HSP 1 Score: 57.0 bits (136), Expect = 7.5e-09
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 1   WVTGVILVVLTVSFGVIGYSLPWDQIGYRAVKIVIGVPKAIPIIGSHLIELLCGSASVRQ 60
           W  GV++ +L +    IGY LPW Q+ +    ++  +  AIP++G  ++  L G  SV  
Sbjct: 120 WCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDN 179

Query: 61  STLTRFYSLNTL 73
           +TL RF+SL+ L
Sbjct: 180 ATLNRFFSLHHL 191

The following BLAST results are available for this feature:

BLAST of MS009397 vs. NCBI nr


Match Name	E-value	Identity	Description
PNT67432.1	2.9e-23	83.10	hypothetical protein BRADI_3g27315v3 [Brachypodium distachyon]	[more]
YP_009490514.1	3.8e-23	84.51	cytochrome b6 [Cibotium barometz] >AWH62732.1 cytochrome b6 [Cibotium barometz]	[more]
YP_009502347.1	3.8e-23	84.51	cytochrome b6 [Alsophila podophylla] >YP_009679346.1 cytochrome b6 [Alsophila gi...	[more]
QZN05751.1	3.8e-23	84.51	cytochrome b6 [Alsophila denticulata]	[more]
YP_002970674.1	3.8e-23	84.51	cytochrome b6 [Alsophila spinulosa] >YP_009679435.1 cytochrome b6 [Alsophila cos...	[more]

BLAST of MS009397 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P06248	3.2e-25	84.51	Cytochrome b6 OS=Marchantia polymorpha OX=3197 GN=petB PE=3 SV=1	[more]
Q3BAK7	4.2e-25	83.10	Cytochrome b6 OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=petB PE=3 ...	[more]
Q85X07	4.2e-25	83.10	Cytochrome b6 OS=Pinus koraiensis OX=88728 GN=petB PE=3 SV=1	[more]
P41628	4.2e-25	83.10	Cytochrome b6 OS=Pinus thunbergii OX=3350 GN=petB PE=3 SV=2	[more]
Q85A24	5.5e-25	81.69	Cytochrome b6 OS=Anthoceros angustus OX=48387 GN=petB PE=2 SV=1	[more]

BLAST of MS009397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K2CZH6	1.4e-23	83.10	CYTB_NTER domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI...	[more]
A0A287WHJ4	1.4e-23	83.10	CYTB_NTER domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 ...	[more]
A0A7L8XKV7	1.9e-23	84.51	Cytochrome b6 OS=Sphaeropteris brunoniana OX=204593 GN=petB PE=3 SV=1	[more]
A0A344AIQ6	1.9e-23	84.51	Cytochrome b6 OS=Alsophila podophylla OX=204585 GN=petB PE=3 SV=1	[more]
C5HY84	1.9e-23	84.51	Cytochrome b6 OS=Alsophila spinulosa OX=204586 GN=petB PE=3 SV=1	[more]

BLAST of MS009397 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00720.1	1.5e-25	81.69	photosynthetic electron transfer B	[more]
AT2G07727.1	7.5e-09	36.11	Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal	[more]
ATMG00220.1	7.5e-09	36.11	apocytochrome b	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027387	Cytochrome b/b6-like domain superfamily	GENE3D	1.20.810.10	Cytochrome Bc1 Complex; Chain C	coord: 1..74 e-value: 7.3E-23 score: 82.6
IPR005797	Cytochrome b/b6, N-terminal	PFAM	PF00033	Cytochrome_B	coord: 1..71 e-value: 2.7E-26 score: 92.6
IPR005797	Cytochrome b/b6, N-terminal	PROSITE	PS51002	CYTB_NTER	coord: 1..74 score: 13.887646
IPR023530	Cytochrome b6, PetB	PANTHER	PTHR19271:SF20	SUBFAMILY NOT NAMED	coord: 1..72
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 1..72
IPR016174	Di-haem cytochrome, transmembrane	SUPERFAMILY	81342	Transmembrane di-heme cytochromes	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009397.1	MS009397.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0016020	membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0016491	oxidoreductase activity