MS009386 (gene) Bitter gourd (TR) v1

Overview


Name	MS009386
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold813: 858808 .. 859641 (+)
RNA-Seq Expression	MS009386
Synteny	MS009386

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAGACTTCGTTTTGTAATCTCATCGACGCACTTTGCGAGTACCGACATGTTGTTGAAGCTCAGGATTTGTGTTTTGGTAAGAACAAGAAGGTGGACTGTAATGCGAGTACGAAGATTCATAACCTAATTCTTCGTGGTTGGCTTAAGATGGGATGGTGGAGTAAGTGCAGAGAGTTTTGGGAAGAGATGGATAATAAGGGTGTTCGTAAGGATTTACATTCATATTCGATATATATGGATATTCAGTGCAAGAGTGGGAAGCCATGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAACTGGATGTTGTGGCTTACAATACGGTGATTCATGCCATTGGGATTTCAGAAGGTGTTGATTTTGCGAGTCGGGTGTTTCACGAGATGAAGGAAATGGGGTGTAAGCCTAATGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGGTTCAAGGATGCCCATGTGATGCTTGATCAAATGCTTAAGAAGGATTGTCCACCTAATGTTATTACATATCATTGTTTTTTCAGGTCTTTTGAAAAGCCAAACGAGATCCTTATGTTATTTGATAGGATGATTAAATTCGGGGTTCATCCAAAGATGGACACTTATGTGATGCTTATGAGAAAGTTTGGAAGATGGGGGTTTCTAAGACCAGTGTTTTTAGTGTGGAATAAGATGGAGGAACTTGGGTGTAGTCCTAATGAGTCTGCCTACAATGCTCTAATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTATGACGAAGAGATGGTAGCGAAAGGTCTTTCACCT

mRNA sequence

GATGAGACTTCGTTTTGTAATCTCATCGACGCACTTTGCGAGTACCGACATGTTGTTGAAGCTCAGGATTTGTGTTTTGGTAAGAACAAGAAGGTGGACTGTAATGCGAGTACGAAGATTCATAACCTAATTCTTCGTGGTTGGCTTAAGATGGGATGGTGGAGTAAGTGCAGAGAGTTTTGGGAAGAGATGGATAATAAGGGTGTTCGTAAGGATTTACATTCATATTCGATATATATGGATATTCAGTGCAAGAGTGGGAAGCCATGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAACTGGATGTTGTGGCTTACAATACGGTGATTCATGCCATTGGGATTTCAGAAGGTGTTGATTTTGCGAGTCGGGTGTTTCACGAGATGAAGGAAATGGGGTGTAAGCCTAATGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGGTTCAAGGATGCCCATGTGATGCTTGATCAAATGCTTAAGAAGGATTGTCCACCTAATGTTATTACATATCATTGTTTTTTCAGGTCTTTTGAAAAGCCAAACGAGATCCTTATGTTATTTGATAGGATGATTAAATTCGGGGTTCATCCAAAGATGGACACTTATGTGATGCTTATGAGAAAGTTTGGAAGATGGGGGTTTCTAAGACCAGTGTTTTTAGTGTGGAATAAGATGGAGGAACTTGGGTGTAGTCCTAATGAGTCTGCCTACAATGCTCTAATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTATGACGAAGAGATGGTAGCGAAAGGTCTTTCACCT

Coding sequence (CDS)

GATGAGACTTCGTTTTGTAATCTCATCGACGCACTTTGCGAGTACCGACATGTTGTTGAAGCTCAGGATTTGTGTTTTGGTAAGAACAAGAAGGTGGACTGTAATGCGAGTACGAAGATTCATAACCTAATTCTTCGTGGTTGGCTTAAGATGGGATGGTGGAGTAAGTGCAGAGAGTTTTGGGAAGAGATGGATAATAAGGGTGTTCGTAAGGATTTACATTCATATTCGATATATATGGATATTCAGTGCAAGAGTGGGAAGCCATGGAAGGCTGTTAAATTGTACAAGGAGATGAAAAAGAAGGGAATGAAACTGGATGTTGTGGCTTACAATACGGTGATTCATGCCATTGGGATTTCAGAAGGTGTTGATTTTGCGAGTCGGGTGTTTCACGAGATGAAGGAAATGGGGTGTAAGCCTAATGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGGTTCAAGGATGCCCATGTGATGCTTGATCAAATGCTTAAGAAGGATTGTCCACCTAATGTTATTACATATCATTGTTTTTTCAGGTCTTTTGAAAAGCCAAACGAGATCCTTATGTTATTTGATAGGATGATTAAATTCGGGGTTCATCCAAAGATGGACACTTATGTGATGCTTATGAGAAAGTTTGGAAGATGGGGGTTTCTAAGACCAGTGTTTTTAGTGTGGAATAAGATGGAGGAACTTGGGTGTAGTCCTAATGAGTCTGCCTACAATGCTCTAATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTATGACGAAGAGATGGTAGCGAAAGGTCTTTCACCT

Protein sequence

DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREFWEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVITYHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP

Homology

[Close]

BLAST of MS009386 vs. NCBI nr
Match: XP_022148858.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia])

HSP 1 Score: 595.9 bits (1535), Expect = 1.8e-166
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 161 DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 220

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 221 WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 280

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT
Sbjct: 281 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 340

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG
Sbjct: 341 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 400

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 401 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 438

[Close]

BLAST of MS009386 vs. NCBI nr
Match: KAG7014158.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 570.5 bits (1469), Expect = 8.1e-159
Identity = 264/278 (94.96%), Postives = 272/278 (97.84%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCEYRHVVEAQDLCFGKN+ ++C ASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 161 DETSFCNLIDALCEYRHVVEAQDLCFGKNRMLNCGASTKIHNLILRGWLKMGWWSKCREF 220

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 221 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 280

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAH+MLDQMLKKDCPPNVIT
Sbjct: 281 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHMMLDQMLKKDCPPNVIT 340

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKP EILMLFDRMIK+GV PKMDTYVMLMRKFGRWGFLRPVF+VWNKMEELG
Sbjct: 341 YHCFFRSLEKPKEILMLFDRMIKYGVQPKMDTYVMLMRKFGRWGFLRPVFVVWNKMEELG 400

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 401 CSPDESAYNSLIDALVEKGMIDMARKYDEEMVAKGLSP 438

[Close]

BLAST of MS009386 vs. NCBI nr
Match: XP_023547614.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023547616.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 570.5 bits (1469), Expect = 8.1e-159
Identity = 264/278 (94.96%), Postives = 272/278 (97.84%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCEYRHVVEAQDLCFGKN+K++C ASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 178 DETSFCNLIDALCEYRHVVEAQDLCFGKNRKLNCGASTKIHNLILRGWLKMGWWSKCREF 237

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 238 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 297

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVF EMKEMGCKPNVVTCNTIIKLFCENGRFKDAH+MLDQMLKKDCPPNVIT
Sbjct: 298 SEGVDFASRVFQEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHMMLDQMLKKDCPPNVIT 357

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKPNEILMLFDRMIK+GV PKMDTYVMLMRKFGRWGFLRPVF+VWNKMEELG
Sbjct: 358 YHCFFRSLEKPNEILMLFDRMIKYGVQPKMDTYVMLMRKFGRWGFLRPVFVVWNKMEELG 417

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSP+ESAYN+LIDALVEKGMIDMARKYDEEMV KGLSP
Sbjct: 418 CSPDESAYNSLIDALVEKGMIDMARKYDEEMVVKGLSP 455

[Close]

BLAST of MS009386 vs. NCBI nr
Match: KAG6575615.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 570.5 bits (1469), Expect = 8.1e-159
Identity = 264/278 (94.96%), Postives = 272/278 (97.84%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCEYRHVVEAQDLCFGKN+ ++C ASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 161 DETSFCNLIDALCEYRHVVEAQDLCFGKNRMLNCGASTKIHNLILRGWLKMGWWSKCREF 220

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 221 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 280

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAH+MLDQMLKKDCPPNVIT
Sbjct: 281 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHMMLDQMLKKDCPPNVIT 340

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKP EILMLFDRMIK+GV PKMDTYVMLMRKFGRWGFLRPVF+VWNKMEELG
Sbjct: 341 YHCFFRSLEKPKEILMLFDRMIKYGVQPKMDTYVMLMRKFGRWGFLRPVFVVWNKMEELG 400

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 401 CSPDESAYNSLIDALVEKGMIDMARKYDEEMVAKGLSP 438

[Close]

BLAST of MS009386 vs. NCBI nr
Match: XP_022953157.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953158.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953159.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata])

HSP 1 Score: 568.2 bits (1463), Expect = 4.0e-158
Identity = 263/278 (94.60%), Postives = 273/278 (98.20%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLID+LCEYRHVVEAQDLCFGKN+K++C+ASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 178 DETSFCNLIDSLCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREF 237

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 238 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 297

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAH+MLDQMLKKDC PNVIT
Sbjct: 298 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHMMLDQMLKKDCLPNVIT 357

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKP EILMLFDRMIK+GV PKMDTYVMLMRKFGRWGFLRPVF+VWNKMEELG
Sbjct: 358 YHCFFRSLEKPKEILMLFDRMIKYGVQPKMDTYVMLMRKFGRWGFLRPVFVVWNKMEELG 417

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 418 CSPDESAYNSLIDALVEKGMIDMARKYDEEMVAKGLSP 455

[Close]

BLAST of MS009386 vs. ExPASy Swiss-Prot
Match: Q9M8M3 (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.7e-114
Identity = 191/280 (68.21%), Postives = 231/280 (82.50%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVD--CNASTKIHNLILRGWLKMGWWSKCR 60
           DETSF NL+DALCE++HVVEA++LCFGKN   +    ++TKIHNLILRGW K+GWW KC+
Sbjct: 150 DETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCK 209

Query: 61  EFWEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAI 120
           E+W++MD +GV KDL SYSIYMDI CKSGKPWKAVKLYKEMK + MKLDVVAYNTVI AI
Sbjct: 210 EYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAI 269

Query: 121 GISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNV 180
           G S+GV+F  RVF EM+E GC+PNV T NTIIKL CE+GR +DA+ MLD+M K+ C P+ 
Sbjct: 270 GASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDS 329

Query: 181 ITYHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEE 240
           ITY C F   EKP+EIL LF RMI+ GV PKMDTYVMLMRKF RWGFL+PV  VW  M+E
Sbjct: 330 ITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKE 389

Query: 241 LGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
            G +P+ +AYNA+IDAL++KGM+DMAR+Y+EEM+ +GLSP
Sbjct: 390 SGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP 429

[Close]

BLAST of MS009386 vs. ExPASy Swiss-Prot
Match: Q9LFQ4 (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g15010 PE=2 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 4.5e-43
Identity = 100/276 (36.23%), Postives = 150/276 (54.35%), Query Frame = 0


Query: 5   FCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLK-MGWWSKCREFWEE 64
           F +L+ ALC Y++V +A  L F    K   +A  K  N++L GW   +G   +    W E
Sbjct: 235 FQSLLSALCRYKNVSDAGHLIFCNKDKYPFDA--KSFNIVLNGWCNVIGSPREAERVWME 294

Query: 65  MDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEG 124
           M N GV+ D+ SYS  +    K G   K +KL+  MKK+ ++ D   YN V+HA+  +  
Sbjct: 295 MGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASF 354

Query: 125 VDFASRVFHEM-KEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVITYH 184
           V  A  +   M +E G +PNVVT N++IK  C+  + ++A  + D+ML+K   P + TYH
Sbjct: 355 VSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYH 414

Query: 185 CFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELGCS 244
            F R      E+  L  +M K G  P ++TY+ML+RK  RW     V L+W++M+E    
Sbjct: 415 AFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVG 474

Query: 245 PNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           P+ S+Y  +I  L   G I+ A  Y +EM  KG+ P
Sbjct: 475 PDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRP 508

[Close]

BLAST of MS009386 vs. ExPASy Swiss-Prot
Match: Q9LIL5 (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana OX=3702 GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.6e-35
Identity = 85/280 (30.36%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           D  +F  L+  LC Y+HV  A+ L   + ++  C+   K  N+IL GW  +G   + + F
Sbjct: 212 DLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD--IKAMNMILNGWCVLGNVHEAKRF 271

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           W+++     R D+ SY   ++   K GK  KA++LY+ M       DV   N VI A+  
Sbjct: 272 WKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCF 331

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKK--DCPPNV 180
            + +  A  VF E+ E G  PNVVT N+++K  C+  R +    ++++M  K   C PN 
Sbjct: 332 KKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPND 391

Query: 181 ITYHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEE 240
           +T+    +  ++  ++ ++ +RM K       D Y ++ R + +W     V  +W++ME 
Sbjct: 392 VTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMER 451

Query: 241 LGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
            G  P++  Y   I  L  KG I  A  Y +EM++KG+ P
Sbjct: 452 SGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVP 489

[Close]

BLAST of MS009386 vs. ExPASy Swiss-Prot
Match: Q9SSR6 (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-33
Identity = 88/278 (31.65%), Postives = 141/278 (50.72%), Query Frame = 0


Query: 8   LIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREFWEEMDNK 67
           L+ +LC+ +HV  AQ+  FGK K      S K +++++RGW ++   S  R+ ++EM  +
Sbjct: 179 LLHSLCDKKHVNHAQEF-FGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLER 238

Query: 68  GVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFA 127
               DL +Y+  +D  CKSG      K+++EM   G+K D  ++   IHA   +  V  A
Sbjct: 239 NCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSA 298

Query: 128 SRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPP------NVITY 187
            +V   MK     PNV T N IIK  C+N +  DA+++LD+M++K   P      +++ Y
Sbjct: 299 YKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAY 358

Query: 188 HCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELGC 247
           HC      + N    L  RM +    P   TY M+++   R G       +W  M E   
Sbjct: 359 HC---DHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKF 418

Query: 248 SPNESAYNALIDALV-EKGMIDMARKYDEEMVAKGLSP 279
            P  + Y  +I  LV +KG ++ A +Y E M+ +G+ P
Sbjct: 419 YPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPP 452

[Close]

BLAST of MS009386 vs. ExPASy Swiss-Prot
Match: Q9S7R4 (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OTP43 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-32
Identity = 88/284 (30.99%), Postives = 139/284 (48.94%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           D  SF  ++D LC+ + V +A +L      +   +  T  +N+IL GW  +    K  E 
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALRGRF--SVDTVTYNVILNGWCLIKRTPKALEV 219

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
            +EM  +G+  +L +Y+  +    ++G+   A + + EMKK+  ++DVV Y TV+H  G+
Sbjct: 220 LKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGV 279

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           +  +  A  VF EM   G  P+V T N +I++ C+    ++A VM ++M+++   PNV T
Sbjct: 280 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTT 339

Query: 181 YHCFFRSFEKPNEILM---LFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKME 240
           Y+   R      E      L  RM   G  P   TY M++R +     +     ++ KM 
Sbjct: 340 YNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMG 399

Query: 241 ELGCSPNESAYNALIDAL-VEKGMIDM--ARKYDEEMVAKGLSP 279
              C PN   YN LI  + V K   DM  A K   EMV +G  P
Sbjct: 400 SGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIP 441

[Close]

BLAST of MS009386 vs. ExPASy TrEMBL
Match: A0A6J1D599 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017413 PE=4 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 8.7e-167
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 161 DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 220

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 221 WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 280

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT
Sbjct: 281 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 340

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG
Sbjct: 341 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 400

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 401 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 438

[Close]

BLAST of MS009386 vs. ExPASy TrEMBL
Match: A0A6J1GNU3 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455781 PE=4 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 1.9e-158
Identity = 263/278 (94.60%), Postives = 273/278 (98.20%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLID+LCEYRHVVEAQDLCFGKN+K++C+ASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 178 DETSFCNLIDSLCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREF 237

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 238 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 297

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAH+MLDQMLKKDC PNVIT
Sbjct: 298 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHMMLDQMLKKDCLPNVIT 357

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKP EILMLFDRMIK+GV PKMDTYVMLMRKFGRWGFLRPVF+VWNKMEELG
Sbjct: 358 YHCFFRSLEKPKEILMLFDRMIKYGVQPKMDTYVMLMRKFGRWGFLRPVFVVWNKMEELG 417

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 418 CSPDESAYNSLIDALVEKGMIDMARKYDEEMVAKGLSP 455

[Close]

BLAST of MS009386 vs. ExPASy TrEMBL
Match: A0A6J1JMZ1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111488358 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 3.7e-157
Identity = 262/278 (94.24%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCEYRHVVEAQDLCFGKN+K++C+ASTKIHNLILRGWLKMGWWSKCREF
Sbjct: 178 DETSFCNLIDALCEYRHVVEAQDLCFGKNRKLNCDASTKIHNLILRGWLKMGWWSKCREF 237

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI
Sbjct: 238 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 297

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVF EMKEMGCKPNVVTCNTIIKLFCENGRFKDAH ML QMLKKDCPPNVIT
Sbjct: 298 SEGVDFASRVFQEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHKMLHQMLKKDCPPNVIT 357

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKP EILMLFDRMIK+GV PKMDTYVMLMRKFGRWGFLRPVF+VWNKMEELG
Sbjct: 358 YHCFFRSLEKPKEILMLFDRMIKYGVQPKMDTYVMLMRKFGRWGFLRPVFVVWNKMEELG 417

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSP+ESAYN+LIDALVEKGMID ARKYDEEMVAKGLSP
Sbjct: 418 CSPDESAYNSLIDALVEKGMIDRARKYDEEMVAKGLSP 455

[Close]

BLAST of MS009386 vs. ExPASy TrEMBL
Match: A0A0A0KBR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432170 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 8.2e-157
Identity = 258/278 (92.81%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCE RHV EAQ+LCFGKN+K+DC++STKIHNLILRGWLKMGWWSKCR+F
Sbjct: 150 DETSFCNLIDALCESRHVDEAQELCFGKNRKLDCDSSTKIHNLILRGWLKMGWWSKCRDF 209

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHA+GI
Sbjct: 210 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAVGI 269

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNT+IKLFCENGRFKDAH+MLDQMLK+DC PNVIT
Sbjct: 270 SEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVIT 329

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKP EIL+LFDRMIK+GVHPKMDTYVML+RKFGRWGFLRPVFLVWNKMEELG
Sbjct: 330 YHCFFRSLEKPKEILVLFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELG 389

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 390 CSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 427

[Close]

BLAST of MS009386 vs. ExPASy TrEMBL
Match: A0A1S3CFA1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499823 PE=4 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 5.3e-156
Identity = 256/278 (92.09%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           DETSFCNLIDALCE RHV EAQ+LCFGKN+++DC++STKIHNLILRGWLKMGWWSKCR+F
Sbjct: 150 DETSFCNLIDALCESRHVDEAQELCFGKNRRLDCDSSTKIHNLILRGWLKMGWWSKCRDF 209

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           WEEMD KGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMK+KGMKLDVVAYNTVIHA+GI
Sbjct: 210 WEEMDKKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKQKGMKLDVVAYNTVIHAVGI 269

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           SEGVDFASRVFHEMKEMGCKPNVVTCNT+IKLFCENGRFKDAH+MLDQMLK+DC PNVIT
Sbjct: 270 SEGVDFASRVFHEMKEMGCKPNVVTCNTVIKLFCENGRFKDAHMMLDQMLKRDCQPNVIT 329

Query: 181 YHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELG 240
           YHCFFRS EKP EIL+LFDRMIK+GVHPKMDTYVML+RKFGRWGFLRPVFLVWNKMEELG
Sbjct: 330 YHCFFRSLEKPKEILILFDRMIKYGVHPKMDTYVMLLRKFGRWGFLRPVFLVWNKMEELG 389

Query: 241 CSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           CSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSP
Sbjct: 390 CSPNECAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 427

[Close]

BLAST of MS009386 vs. TAIR 10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-115
Identity = 191/280 (68.21%), Postives = 231/280 (82.50%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVD--CNASTKIHNLILRGWLKMGWWSKCR 60
           DETSF NL+DALCE++HVVEA++LCFGKN   +    ++TKIHNLILRGW K+GWW KC+
Sbjct: 150 DETSFYNLVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCK 209

Query: 61  EFWEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAI 120
           E+W++MD +GV KDL SYSIYMDI CKSGKPWKAVKLYKEMK + MKLDVVAYNTVI AI
Sbjct: 210 EYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAI 269

Query: 121 GISEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNV 180
           G S+GV+F  RVF EM+E GC+PNV T NTIIKL CE+GR +DA+ MLD+M K+ C P+ 
Sbjct: 270 GASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDS 329

Query: 181 ITYHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEE 240
           ITY C F   EKP+EIL LF RMI+ GV PKMDTYVMLMRKF RWGFL+PV  VW  M+E
Sbjct: 330 ITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKE 389

Query: 241 LGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
            G +P+ +AYNA+IDAL++KGM+DMAR+Y+EEM+ +GLSP
Sbjct: 390 SGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP 429

[Close]

BLAST of MS009386 vs. TAIR 10
Match: AT5G15010.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 176.4 bits (446), Expect = 3.2e-44
Identity = 100/276 (36.23%), Postives = 150/276 (54.35%), Query Frame = 0


Query: 5   FCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLK-MGWWSKCREFWEE 64
           F +L+ ALC Y++V +A  L F    K   +A  K  N++L GW   +G   +    W E
Sbjct: 235 FQSLLSALCRYKNVSDAGHLIFCNKDKYPFDA--KSFNIVLNGWCNVIGSPREAERVWME 294

Query: 65  MDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEG 124
           M N GV+ D+ SYS  +    K G   K +KL+  MKK+ ++ D   YN V+HA+  +  
Sbjct: 295 MGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKASF 354

Query: 125 VDFASRVFHEM-KEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVITYH 184
           V  A  +   M +E G +PNVVT N++IK  C+  + ++A  + D+ML+K   P + TYH
Sbjct: 355 VSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYH 414

Query: 185 CFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELGCS 244
            F R      E+  L  +M K G  P ++TY+ML+RK  RW     V L+W++M+E    
Sbjct: 415 AFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVG 474

Query: 245 PNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
           P+ S+Y  +I  L   G I+ A  Y +EM  KG+ P
Sbjct: 475 PDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRP 508

[Close]

BLAST of MS009386 vs. TAIR 10
Match: AT3G15200.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-36
Identity = 85/280 (30.36%), Postives = 142/280 (50.71%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           D  +F  L+  LC Y+HV  A+ L   + ++  C+   K  N+IL GW  +G   + + F
Sbjct: 212 DLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCD--IKAMNMILNGWCVLGNVHEAKRF 271

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
           W+++     R D+ SY   ++   K GK  KA++LY+ M       DV   N VI A+  
Sbjct: 272 WKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCF 331

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKK--DCPPNV 180
            + +  A  VF E+ E G  PNVVT N+++K  C+  R +    ++++M  K   C PN 
Sbjct: 332 KKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPND 391

Query: 181 ITYHCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEE 240
           +T+    +  ++  ++ ++ +RM K       D Y ++ R + +W     V  +W++ME 
Sbjct: 392 VTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMER 451

Query: 241 LGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP 279
            G  P++  Y   I  L  KG I  A  Y +EM++KG+ P
Sbjct: 452 SGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVP 489

[Close]

BLAST of MS009386 vs. TAIR 10
Match: AT1G52640.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-34
Identity = 88/278 (31.65%), Postives = 141/278 (50.72%), Query Frame = 0


Query: 8   LIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREFWEEMDNK 67
           L+ +LC+ +HV  AQ+  FGK K      S K +++++RGW ++   S  R+ ++EM  +
Sbjct: 179 LLHSLCDKKHVNHAQEF-FGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLER 238

Query: 68  GVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGISEGVDFA 127
               DL +Y+  +D  CKSG      K+++EM   G+K D  ++   IHA   +  V  A
Sbjct: 239 NCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSA 298

Query: 128 SRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPP------NVITY 187
            +V   MK     PNV T N IIK  C+N +  DA+++LD+M++K   P      +++ Y
Sbjct: 299 YKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAY 358

Query: 188 HCFFRSFEKPNEILMLFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKMEELGC 247
           HC      + N    L  RM +    P   TY M+++   R G       +W  M E   
Sbjct: 359 HC---DHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKF 418

Query: 248 SPNESAYNALIDALV-EKGMIDMARKYDEEMVAKGLSP 279
            P  + Y  +I  LV +KG ++ A +Y E M+ +G+ P
Sbjct: 419 YPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPP 452

[Close]

BLAST of MS009386 vs. TAIR 10
Match: AT1G74900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 7.3e-33
Identity = 83/278 (29.86%), Postives = 134/278 (48.20%), Query Frame = 0


Query: 1   DETSFCNLIDALCEYRHVVEAQDLCFGKNKKVDCNASTKIHNLILRGWLKMGWWSKCREF 60
           D  SF  ++D LC+ + V +A +L      +   +  T  +N+IL GW  +    K  E 
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALRGRF--SVDTVTYNVILNGWCLIKRTPKALEV 219

Query: 61  WEEMDNKGVRKDLHSYSIYMDIQCKSGKPWKAVKLYKEMKKKGMKLDVVAYNTVIHAIGI 120
            +EM  +G+  +L +Y+  +    ++G+   A + + EMKK+  ++DVV Y TV+H  G+
Sbjct: 220 LKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGV 279

Query: 121 SEGVDFASRVFHEMKEMGCKPNVVTCNTIIKLFCENGRFKDAHVMLDQMLKKDCPPNVIT 180
           +  +  A  VF EM   G  P+V T N +I++ C+    ++A VM ++M+++   PNV T
Sbjct: 280 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTT 339

Query: 181 YHCFFRSFEKPNEILM---LFDRMIKFGVHPKMDTYVMLMRKFGRWGFLRPVFLVWNKME 240
           Y+   R      E      L  RM   G  P   TY M++R +     +     ++ KM 
Sbjct: 340 YNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMG 399

Query: 241 ELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKG 276
              C PN   YN LI  +         RK  E+MV  G
Sbjct: 400 SGDCLPNLDTYNILISGM-------FVRKRSEDMVVAG 428

The following BLAST results are available for this feature:

BLAST of MS009386 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148858.1	1.8e-166	100.00	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica ...	[more]
KAG7014158.1	8.1e-159	94.96	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_023547614.1	8.1e-159	94.96	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ...	[more]
KAG6575615.1	8.1e-159	94.96	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022953157.1	4.0e-158	94.60	pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ...	[more]

BLAST of MS009386 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M8M3	1.7e-114	68.21	Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop...	[more]
Q9LFQ4	4.5e-43	36.23	Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidop...	[more]
Q9LIL5	7.6e-35	30.36	Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis th...	[more]
Q9SSR6	3.2e-33	31.65	Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop...	[more]
Q9S7R4	3.5e-32	30.99	Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop...	[more]

BLAST of MS009386 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D599	8.7e-167	100.00	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Momordic...	[more]
A0A6J1GNU3	1.9e-158	94.60	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbit...	[more]
A0A6J1JMZ1	3.7e-157	94.24	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucurbit...	[more]
A0A0A0KBR1	8.2e-157	92.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432170 PE=4 SV=1	[more]
A0A1S3CFA1	5.3e-156	92.09	pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis ...	[more]

BLAST of MS009386 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80550.1	1.2e-115	68.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15010.1	3.2e-44	36.23	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G15200.1	5.4e-36	30.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G52640.1	2.3e-34	31.65	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G74900.1	7.3e-33	29.86	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..87 e-value: 5.0E-9 score: 38.0 coord: 189..278 e-value: 3.8E-18 score: 67.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 88..188 e-value: 1.5E-29 score: 105.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 42..69 e-value: 0.015 score: 15.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 198..256 e-value: 5.0E-5 score: 23.3 coord: 95..155 e-value: 1.1E-15 score: 57.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 75..108 e-value: 5.6E-5 score: 21.0 coord: 144..178 e-value: 2.8E-10 score: 37.7 coord: 40..71 e-value: 3.7E-4 score: 18.5 coord: 247..278 e-value: 3.9E-5 score: 21.6 coord: 109..143 e-value: 1.3E-5 score: 23.0 coord: 212..245 e-value: 1.6E-4 score: 19.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 37..71 score: 9.04313
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 72..106 score: 10.917512
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 107..141 score: 11.202506
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 142..176 score: 12.463056
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 244..278 score: 11.432693
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 209..243 score: 8.593717
None	No IPR available	PANTHER	PTHR47942:SF22	OSJNBA0033G05.8 PROTEIN	coord: 1..278
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009386.1	MS009386.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding