MS009364 (gene) Bitter gourd (TR) v1

Overview


Name	MS009364
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription factor bHLH93-like
Location	scaffold813: 625456 .. 625596 (+)
RNA-Seq Expression	MS009364
Synteny	MS009364

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGAACTAGGATTCTGGTGGATGCAATTGAGTACATGAAAGAACTACTCAAGAAGATTGGGAATCTGCAAAGAGAAGTGGATCGATCAAATCAAACGAATTCAAAATCGAGCGTATTCGTAGTGAGAAATTCACCAAAA

mRNA sequence

GAAAGAACTAGGATTCTGGTGGATGCAATTGAGTACATGAAAGAACTACTCAAGAAGATTGGGAATCTGCAAAGAGAAGTGGATCGATCAAATCAAACGAATTCAAAATCGAGCGTATTCGTAGTGAGAAATTCACCAAAA

Coding sequence (CDS)

GAAAGAACTAGGATTCTGGTGGATGCAATTGAGTACATGAAAGAACTACTCAAGAAGATTGGGAATCTGCAAAGAGAAGTGGATCGATCAAATCAAACGAATTCAAAATCGAGCGTATTCGTAGTGAGAAATTCACCAAAA

Protein sequence

ERTRILVDAIEYMKELLKKIGNLQREVDRSNQTNSKSSVFVVRNSPK

Homology

[Close]

BLAST of MS009364 vs. NCBI nr
Match: XP_022131289.1 (transcription factor bHLH93-like [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQTNS----KSSVFVVRNSPK 48
           +RT IL DAIEYMKELL+KIGNLQREVDRSNQTNS    K S FVVRNSPK
Sbjct: 198 DRTAILADAIEYMKELLEKIGNLQREVDRSNQTNSFNDTKPSEFVVRNSPK 248

[Close]

BLAST of MS009364 vs. NCBI nr
Match: KAG6585313.1 (Transcription factor basic helix-loop-helix 93, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 6.4e-08
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQT------NSKSSVFVVRNSPK 48
           +RT IL DAI+YMKELL+KIGNLQRE+DR+NQT      ++K S FVVRNSPK
Sbjct: 216 DRTAILADAIDYMKELLEKIGNLQREMDRTNQTTRNSFHDTKPSEFVVRNSPK 268

[Close]

BLAST of MS009364 vs. NCBI nr
Match: KAG7020231.1 (Transcription factor bHLH93 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 6.4e-08
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQT------NSKSSVFVVRNSPK 48
           +RT IL DAI+YMKELL+KIGNLQRE+DR+NQT      ++K S FVVRNSPK
Sbjct: 216 DRTAILADAIDYMKELLEKIGNLQREMDRTNQTTRNSFHDTKPSEFVVRNSPK 268

[Close]

BLAST of MS009364 vs. NCBI nr
Match: XP_022950965.1 (transcription factor bHLH93-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 6.4e-08
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQT------NSKSSVFVVRNSPK 48
           +RT IL DAI+YMKELL+KIGNLQRE+DR+NQT      ++K S FVVRNSPK
Sbjct: 216 DRTAILADAIDYMKELLEKIGNLQREMDRTNQTTRNSFHDTKPSEFVVRNSPK 268

[Close]

BLAST of MS009364 vs. NCBI nr
Match: XP_023002803.1 (transcription factor bHLH93-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQT------NSKSSVFVVRNSPK 48
           +RT IL DAI+YMKELL+KIG+LQRE+DR+NQT      ++K S  VVRNSPK
Sbjct: 193 DRTAILADAIDYMKELLEKIGSLQREMDRTNQTTRNSFHDTKPSELVVRNSPK 245

[Close]

BLAST of MS009364 vs. ExPASy TrEMBL
Match: A0A6J1BPT9 (transcription factor bHLH93-like OS=Momordica charantia OX=3673 GN=LOC111004555 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQTNS----KSSVFVVRNSPK 48
           +RT IL DAIEYMKELL+KIGNLQREVDRSNQTNS    K S FVVRNSPK
Sbjct: 198 DRTAILADAIEYMKELLEKIGNLQREVDRSNQTNSFNDTKPSEFVVRNSPK 248

[Close]

BLAST of MS009364 vs. ExPASy TrEMBL
Match: A0A6J1GH95 (transcription factor bHLH93-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453960 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-08
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQT------NSKSSVFVVRNSPK 48
           +RT IL DAI+YMKELL+KIGNLQRE+DR+NQT      ++K S FVVRNSPK
Sbjct: 216 DRTAILADAIDYMKELLEKIGNLQREMDRTNQTTRNSFHDTKPSEFVVRNSPK 268

[Close]

BLAST of MS009364 vs. ExPASy TrEMBL
Match: A0A6J1KUM9 (transcription factor bHLH93-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496559 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.9e-07
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQT------NSKSSVFVVRNSPK 48
           +RT IL DAI+YMKELL+KIG+LQRE+DR+NQT      ++K S  VVRNSPK
Sbjct: 193 DRTAILADAIDYMKELLEKIGSLQREMDRTNQTTRNSFHDTKPSELVVRNSPK 245

[Close]

BLAST of MS009364 vs. ExPASy TrEMBL
Match: A0A6J1K4D0 (transcription factor bHLH93-like OS=Cucurbita maxima OX=3661 GN=LOC111492174 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQ-----TNSKSSVFVVRNSPK 48
           +RT IL DAIEYMKELL+KIGNLQREVD SN       N+K S  V RNSPK
Sbjct: 215 DRTAILADAIEYMKELLEKIGNLQREVDGSNPRTNSLNNTKPSELVARNSPK 266

[Close]

BLAST of MS009364 vs. ExPASy TrEMBL
Match: A0A6J1HDL3 (transcription factor bHLH93-like OS=Cucurbita moschata OX=3662 GN=LOC111462550 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 1   ERTRILVDAIEYMKELLKKIGNLQREVDRSNQT-----NSKSSVFVVRNSPK 48
           +RT IL DAIEYMKELL+KIGNLQREVD SN +     N+K S  + RNSPK
Sbjct: 200 DRTAILADAIEYMKELLEKIGNLQREVDGSNPSTNSLNNTKPSELIARNSPK 251

The following BLAST results are available for this feature:

BLAST of MS009364 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131289.1	4.0e-10	80.39	transcription factor bHLH93-like [Momordica charantia]	[more]
KAG6585313.1	6.4e-08	67.92	Transcription factor basic helix-loop-helix 93, partial [Cucurbita argyrosperma ...	[more]
KAG7020231.1	6.4e-08	67.92	Transcription factor bHLH93 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022950965.1	6.4e-08	67.92	transcription factor bHLH93-like isoform X1 [Cucurbita moschata]	[more]
XP_023002803.1	1.2e-06	64.15	transcription factor bHLH93-like isoform X1 [Cucurbita maxima]	[more]

BLAST of MS009364 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BPT9	1.9e-10	80.39	transcription factor bHLH93-like OS=Momordica charantia OX=3673 GN=LOC111004555 ...	[more]
A0A6J1GH95	3.1e-08	67.92	transcription factor bHLH93-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KUM9	5.9e-07	64.15	transcription factor bHLH93-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1K4D0	1.0e-06	67.31	transcription factor bHLH93-like OS=Cucurbita maxima OX=3661 GN=LOC111492174 PE=...	[more]
A0A6J1HDL3	1.0e-06	65.38	transcription factor bHLH93-like OS=Cucurbita moschata OX=3662 GN=LOC111462550 P...	[more]

BLAST of MS009364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009364.1	MS009364.1	mRNA