MS009359 (gene) Bitter gourd (TR) v1

Overview


Name	MS009359
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nuclear pore complex protein
Location	scaffold813: 601523 .. 603261 (+)
RNA-Seq Expression	MS009359
Synteny	MS009359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGGCGGAGCAGGAGGAAGACGAAGGTTAAGGATCGGTTTATGGAGCTCTGGCACAAGATGATTTTCCCCGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGCGTTAGGGCTCGGAAGAACGGTCAGTCTCTTAATACTCTACTTCTTTTGATTGATTTTAGAGTTTTTTTTAAATCGAAGTTTGATTATGACTTTTGCTCGAATGTACTGATGATCTCGACCGAATGGACTTAATCTGACTGAAGGAATTGCTGTATTTCGTTCTCTTTTTACTTTTCTTCCTCCTGTTCTGATTTTTAATTTCTGAACTCTGAACTCTGTCGATTTTCTCCATGTCGCCATTTGGAATTGTTTACTGCAGAAGAGTTTGTTTGCATCGTCATCTACAGTTTTCTGCATAAGTTTGTGATATTGATTTGAGGGATAAGATTTTCGTTCTCGATTTGCCATGAGAGGAAGGAATTTCGAAAAATATGGGAGGAGCTAGCCATCAGGTTTATAATACTAATTTCTTAATCTGTTTCTTTAAAATACCTTTAACGATTTGAATTTGTTGTATTATACCTTGATCTGTATGCGATGGTCATTGACTCATTAGCCACTTGATCCCAACCACTAGGATATGAGACTGAGAGAGAGAGAGAAAGATAGGGAAAGAAAGAGAGAGAGAGGTTCTAGAAGGCAATAAATGGCCATGTGATTATGCAACCTCTTCAGTTCAATAATTTGGTAGGAAAATCACAACGATCCCATTTGATCATGTATTCCTTTTTCTCCAAAGTGATCCTAAATGGCCAAAAACTATCACCAAATATGGTCATCAAATATTTCTTCAATTTTTAGGAATCTATGTGAAAAATTCCTTCAAGTTTACAAGCCATAGGTGAATCTATTTTTAAGCTATCACCAAATATTGACATCTCCTTTGAAAGTAAATTTATTTTCCCATTAAGATATTTTATCCCATGAATCTCTCCCACCATTTTAATAATGCACTAAAAAGGTTCCCACTAGCAGTGCAGTAGAGAAGACAGTGAAAGATTGAAGCCACTTTGAAGATTAAAATTCCTTTTTTTTTCTCTATTACAGCTTTGATTGTCATTGTCCTGTTGTGATTCTTAACAGTAATCCCACTTAACATCTATGACGGCCACCAAAATTAGTGACCAAATTTGATTTGTTTTTGCACTTCTATTACTATTACAAGCAGGAGGACAAGAGGCGTGGCCATCTCTAGACTTTTATTATTCTTTTTAGTATTGTCCCAAGTCGCTTTAATTGACAATTTGACAAGCACCACAGAATTCACAACCAATATATATATATTCTTTCCGAAAATATATATATAGAGAGAGAGAGAAATGAAGTGGAGTTAGGTCAATCCTGTCCTTCTTGATGGGCTGGGCCCAAATCTGCAGGCCCATTTAATTCTGAATTTGTTGTGTGGGTGGCCCAAAAGATCTCTTTTAACATGAATTAATTTGTCAATCTCATGAAGAAACTTAAGCTAAGCAACTGTGTCATTTTTGCTGCTTACAGGAGCTGGACTTTTGAAGCTCCATGACGATGTAGAAACCTGCGGGTATGAAGATGTGAAGGTGATGTGGGAAATGCTTCGTAGATCGGAGTCGGAGCTGGTCGGTCACCAGCCGAAGCGGAAGCAGCGGCCGTTCTGGCGAGTCTCGGTGTGGTCCAACCACGCCGCTGCAGCCTCGTCTTTCACTGCAACTCATGCT

mRNA sequence

AAGAGGCGGAGCAGGAGGAAGACGAAGGTTAAGGATCGGTTTATGGAGCTCTGGCACAAGATGATTTTCCCCGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGCGTTAGGGCTCGGAAGAACGGAGCTGGACTTTTGAAGCTCCATGACGATGTAGAAACCTGCGGGTATGAAGATGTGAAGGTGATGTGGGAAATGCTTCGTAGATCGGAGTCGGAGCTGGTCGGTCACCAGCCGAAGCGGAAGCAGCGGCCGTTCTGGCGAGTCTCGGTGTGGTCCAACCACGCCGCTGCAGCCTCGTCTTTCACTGCAACTCATGCT

Coding sequence (CDS)

AAGAGGCGGAGCAGGAGGAAGACGAAGGTTAAGGATCGGTTTATGGAGCTCTGGCACAAGATGATTTTCCCCGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGCGTTAGGGCTCGGAAGAACGGAGCTGGACTTTTGAAGCTCCATGACGATGTAGAAACCTGCGGGTATGAAGATGTGAAGGTGATGTGGGAAATGCTTCGTAGATCGGAGTCGGAGCTGGTCGGTCACCAGCCGAAGCGGAAGCAGCGGCCGTTCTGGCGAGTCTCGGTGTGGTCCAACCACGCCGCTGCAGCCTCGTCTTTCACTGCAACTCATGCT

Protein sequence

KRRSRRKTKVKDRFMELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA

Homology

[Close]

BLAST of MS009359 vs. NCBI nr
Match: KAG6575646.1 (hypothetical protein SDJN03_26285, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 98/107 (91.59%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   KRRSRRKTKVKDRFMELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDV 60
           K RSR KTKVK RFMELWHKMIFPVRRVWL VSARVRARK+GAGLLKLHDDVETCGYEDV
Sbjct: 51  KTRSRSKTKVKHRFMELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDV 110

Query: 61  KVMWEMLRRSESELVGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           KVMWEMLRRSESELV H+PKRK RPFWRVSVWSNHAAAASS+TATHA
Sbjct: 111 KVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 157

[Close]

BLAST of MS009359 vs. NCBI nr
Match: KAG7014198.1 (hypothetical protein SDJN02_24373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 98/107 (91.59%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   KRRSRRKTKVKDRFMELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDV 60
           K RSR KTKVK RFMELWHKMIFPVRRVWL VSARVRARK+GAGLLKLHDDVETCGYEDV
Sbjct: 75  KTRSRSKTKVKHRFMELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDV 134

Query: 61  KVMWEMLRRSESELVGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           KVMWEMLRRSESELV H+PKRK RPFWRVSVWSNHAAAASS+TATHA
Sbjct: 135 KVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 181

[Close]

BLAST of MS009359 vs. NCBI nr
Match: XP_022143553.1 (uncharacterized protein LOC111013423 [Momordica charantia])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA
Sbjct: 61  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]

BLAST of MS009359 vs. NCBI nr
Match: XP_038900267.1 (uncharacterized protein LOC120087349 [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWLAVSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLAVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           VGHQPKRKQRPFWRVSVWSNHAAAASS+TATHA
Sbjct: 61  VGHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of MS009359 vs. NCBI nr
Match: KGN45194.1 (hypothetical protein Csa_015637 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 8.8e-45
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWLAVSARVRARK GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLAVSARVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           V HQPKRKQRPFWRVSVWSNHAAAASS+TATHA
Sbjct: 61  VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of MS009359 vs. ExPASy TrEMBL
Match: A0A6J1CR01 (uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013423 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.7e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA
Sbjct: 61  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 93

[Close]

BLAST of MS009359 vs. ExPASy TrEMBL
Match: A0A0A0K8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.2e-45
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWLAVSARVRARK GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLAVSARVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           V HQPKRKQRPFWRVSVWSNHAAAASS+TATHA
Sbjct: 61  VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of MS009359 vs. ExPASy TrEMBL
Match: A0A1S4E346 (uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.5e-45
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWLAVS+RVRARK GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           V HQPKRKQRPFWRVSVWSNHAAAASS+TATHA
Sbjct: 61  VSHQPKRKQRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of MS009359 vs. ExPASy TrEMBL
Match: A0A6J1JS76 (uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWL VSARVRARK+GAGLLKLHDDVETCGYEDVKVMWE+LRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEILRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNHAAAASSFTATHA 108
           VGH+PKRK RPFWRVSVWSNHAAAASS+TATHA
Sbjct: 61  VGHRPKRKLRPFWRVSVWSNHAAAASSYTATHA 93

[Close]

BLAST of MS009359 vs. ExPASy TrEMBL
Match: A0A5A7UWX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001420 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 15  MELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 74
           MELWHKMIFPVRRVWLAVS+RVRARK GAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL
Sbjct: 1   MELWHKMIFPVRRVWLAVSSRVRARKTGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL 60

Query: 75  VGHQPKRKQRPFWRVSVWSNH---AAAASSFTATHA 108
           V HQPKRKQRPFWRVSVWSNH   AAAASS+TATHA
Sbjct: 61  VSHQPKRKQRPFWRVSVWSNHAAAAAAASSYTATHA 96

[Close]

BLAST of MS009359 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-11
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 13 RFMELWHKMIFPVRRVWLAVSARVRARKNGAGLLKLHDDVETCGYEDVKVMWEMLRRSES 72
          R+ E W+ M FP RR+W   + RV  R   +GLL+L  DV +C YED+ +MW +L ++E 
Sbjct: 5  RWREWWNTMAFPTRRIWNRFTVRVGFRH--SGLLRLEHDVSSCEYEDIHIMWNLLHKNED 64

Query: 73 EL---VGHQPKRKQRPFWRV 90
               +  Q +++++P W +
Sbjct: 65 LTRVPIQQQQQQRKKPCWNL 82

The following BLAST results are available for this feature:

BLAST of MS009359 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575646.1	3.8e-48	91.59	hypothetical protein SDJN03_26285, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014198.1	3.8e-48	91.59	hypothetical protein SDJN02_24373, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022143553.1	1.6e-46	100.00	uncharacterized protein LOC111013423 [Momordica charantia]	[more]
XP_038900267.1	1.4e-45	97.85	uncharacterized protein LOC120087349 [Benincasa hispida]	[more]
KGN45194.1	8.8e-45	96.77	hypothetical protein Csa_015637 [Cucumis sativus]	[more]

BLAST of MS009359 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR01	7.7e-47	100.00	uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0K8I7	4.2e-45	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1	[more]
A0A1S4E346	9.5e-45	95.70	uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=...	[more]
A0A6J1JS76	1.0e-43	93.55	uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437...	[more]
A0A5A7UWX2	4.0e-43	92.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS009359 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	8.8e-11	36.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 16..102
None	No IPR available	PANTHER	PTHR33181:SF19	OSJNBA0041A02.21-LIKE PROTEIN	coord: 16..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009359.1	MS009359.1	mRNA