MS009125 (gene) Bitter gourd (TR) v1

Overview
NameMS009125
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRRM domain-containing protein
Locationscaffold220: 63117 .. 64407 (+)
RNA-Seq ExpressionMS009125
SyntenyMS009125
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTGAATAAGGCTACTTCTTTATTGTCTGAGAAGAAGGAATCTGCCGATTTCTTGGTATTTACCGTTGTACCTCTGCCTCAGATTTTGATTCTATGTTTGGTTATTTCTATGTAATTGTTTCTTACTTTTATCTCTGATTTTTCTCTCTTCAAGCCGTTGGTTGGGGGCCCTGGCCGCAAGTTACCGGCACAAAAGCCACTGGAAAATACTGCTACTGTTTTGTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGTTTGCCACTGACATTATACGTTGAATGAAATTGGAAATGTGTCTTGTGAATATTCGAAGTATAAGCTTCTCATTCTCTTGCTTGCTAGGTCTTAACGTTAAAGTTTTTGACAGGGTTTTTTGGACAGTTTGGTAAAGTCAAGAGATTAAGAATTGCACGAAATAAAAAGGTAAGACTCATATCTGCAAAACGTTCTTCAAAAGAAAATATGTTTGCAGCAGAATGTTGCATTGCAAATAAATCGTCAAATTTTACTGATAATTGTAATTTCTCCATTTAATTTCTAACTTTTTTTTCCCACTATCTTCATCCATGCTGTAAGTTATGATCTTTTTTACTTGCAGACTGGGAAGTCAAGGCACTTTGGCTACATTGAATTTGAATCTCCGGAGGTTATATCTATGGACATTTCTGTGTGTAATTTTCTAAATTTTAGTTATTCTTTTTAATCTCTTTCACTTTATCCTGAATTTGGATTCTGTGAGTGCAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATCTGTTGTATGAACACATTCTGAAAGTCCATCTAATTCCTCCCGAACATGTTCATCCAAAGCTGTAAGTAATCAATTACATTTCTACTTCTAGATTTCTGCATTATCCCATGTGATGATGTAGTTGTTTGATATTACTAGTAATCAAATGTTGTCATATTGCAGATGGAAAGGTTTTAACTATCGCTACAAGCCTTTAAATTTGTTCGAACTTGAGCGTAAACAGCATAACAAGGTAATAAACTTGGAAAAATATCTTTTAGACCATAAACAAACATGTCTTTTTACTAGTTTTATGATATTTTTCAGGAAAGGACATTGAGTGAACACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGGCAGAAGAGGATAAGAGCTGCTGGGATTGAATACGAGTGTCCAGAAATTGTAAGAATTTATTTCTTTTCTGAAAGTTTATTAAATTCTAGC

mRNA sequence

ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTGAATAAGGCTACTTCTTTATTGTCTGAGAAGAAGGAATCTGCCGATTTCTTGCCGTTGGTTGGGGGCCCTGGCCGCAAGTTACCGGCACAAAAGCCACTGGAAAATACTGCTACTGTTTTGTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTTGGACAGTTTGGTAAAGTCAAGAGATTAAGAATTGCACGAAATAAAAAGACTGGGAAGTCAAGGCACTTTGGCTACATTGAATTTGAATCTCCGGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATCTGTTGTATGAACACATTCTGAAAGTCCATCTAATTCCTCCCGAACATGTTCATCCAAAGCTATGGAAAGGTTTTAACTATCGCTACAAGCCTTTAAATTTGTTCGAACTTGAGCGTAAACAGCATAACAAGGAAAGGACATTGAGTGAACACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGGCAGAAGAGGATAAGAGCTGCTGGGATTGAATACGAGTGTCCAGAAATTGTAAGAATTTATTTCTTTTCTGAAAGTTTATTAAATTCTAGC

Coding sequence (CDS)

ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTGAATAAGGCTACTTCTTTATTGTCTGAGAAGAAGGAATCTGCCGATTTCTTGCCGTTGGTTGGGGGCCCTGGCCGCAAGTTACCGGCACAAAAGCCACTGGAAAATACTGCTACTGTTTTGTACATTGGTCGCATACCCCATGGTTTCTTCGAGAAGGAGATGGAAGGGTTTTTTGGACAGTTTGGTAAAGTCAAGAGATTAAGAATTGCACGAAATAAAAAGACTGGGAAGTCAAGGCACTTTGGCTACATTGAATTTGAATCTCCGGAGGTGGCAAAAATTGTAGCTGATTCTATGCATAACTATCTGTTGTATGAACACATTCTGAAAGTCCATCTAATTCCTCCCGAACATGTTCATCCAAAGCTATGGAAAGGTTTTAACTATCGCTACAAGCCTTTAAATTTGTTCGAACTTGAGCGTAAACAGCATAACAAGGAAAGGACATTGAGTGAACACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGGATCAGGCTAGGCAGAAGAGGATAAGAGCTGCTGGGATTGAATACGAGTGTCCAGAAATTGTAAGAATTTATTTCTTTTCTGAAAGTTTATTAAATTCTAGC

Protein sequence

MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEHILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQARQKRIRAAGIEYECPEIVRIYFFSESLLNSS
Homology
BLAST of MS009125 vs. NCBI nr
Match: XP_022134394.1 (uncharacterized RNA-binding protein C1827.05c [Momordica charantia])

HSP 1 Score: 392.5 bits (1007), Expect = 2.3e-105
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR
Sbjct: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           QKRIRAAGIEYECPEIV
Sbjct: 181 QKRIRAAGIEYECPEIV 197

BLAST of MS009125 vs. NCBI nr
Match: XP_022993750.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 6.7e-97
Identity = 181/197 (91.88%), Postives = 191/197 (96.95%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKL+KATS LS+KKESADFLPL GGPGRKLPAQKPLENTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARN+KTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           +LKVHLI PEHVHPKLWKGFNYR+KPL+  ELERKQHNKERTL EH+KLVERILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           +KRIRAAGI+YECPEIV
Sbjct: 181 KKRIRAAGIDYECPEIV 197

BLAST of MS009125 vs. NCBI nr
Match: TYK11746.1 (putative RNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 364.0 bits (933), Expect = 8.7e-97
Identity = 182/202 (90.10%), Postives = 190/202 (94.06%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKL KAT L S+KKESADFLPL GGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYR+ PLN  ELERKQHNKERTL EH+KLV+RILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIEYECPEIVRIYFF 203
           QKRIRAAGI+YECPEIVR + F
Sbjct: 181 QKRIRAAGIDYECPEIVRRFLF 202

BLAST of MS009125 vs. NCBI nr
Match: XP_022922397.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 183/197 (92.89%), Postives = 189/197 (95.94%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKLNKATSLLS KKESADFLPL GGPGRKLPAQKPLE+TATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYR+ PLN  ELERK+HNKERTL EHRKLVERILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           QKRIRAAGI+YECPEIV
Sbjct: 181 QKRIRAAGIDYECPEIV 197

BLAST of MS009125 vs. NCBI nr
Match: KAG6602267.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.5 bits (924), Expect = 9.6e-96
Identity = 181/197 (91.88%), Postives = 189/197 (95.94%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKL+KATSL+S KKESADFLPL GGPGRKLPAQKPLE+TATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLISNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYR+ PLN  ELERK+HNKERTL EHRKLVERILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           QKRIRAAGI+YECPEIV
Sbjct: 181 QKRIRAAGIDYECPEIV 197

BLAST of MS009125 vs. ExPASy Swiss-Prot
Match: O74978 (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1827.05c PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 64/155 (41.29%), Postives = 104/155 (67.10%), Query Frame = 0

Query: 38  RKLPAQKPLENTATVLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYI 97
           +K+   K L+    VLY+GR+PHGF+EK+M  +F QFG V RLR++RN+KTG S+H+ +I
Sbjct: 92  KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151

Query: 98  EFESPEVAKIVADSMHNYLLYEHILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQH 157
           EFES +VA +VA++MHNYLLY  +L+  +IP + VH  ++KG +  +K +    + R QH
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211

Query: 158 NKERTLSEHRKLVERILKRDQARQKRIRAAGIEYE 193
            K  +  +  KL+ R  ++ + ++++++  GI  E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246

BLAST of MS009125 vs. ExPASy Swiss-Prot
Match: Q8JIY8 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=nifk PE=2 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 8.1e-29
Identity = 65/143 (45.45%), Postives = 99/143 (69.23%), Query Frame = 0

Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADS 111
           VLY+G +P G FE +++ +F QFGKV RLR++R+KKTG S+ +G++EFE  EVAKIVA++
Sbjct: 46  VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAET 105

Query: 112 MHNYLLYEHILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVE 171
           M+NYL+ E I+K H+IPPE VH KL+ G    +K      + R  +NK  T  + +K+  
Sbjct: 106 MNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGT 165

Query: 172 RILKRDQARQKRIRAAGIEYECP 195
           ++L ++   +KR+ A GI+Y+ P
Sbjct: 166 KLLSKESKLRKRLAAKGIDYDFP 186

BLAST of MS009125 vs. ExPASy Swiss-Prot
Match: Q6GL69 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis OX=8364 GN=nifk PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 62/143 (43.36%), Postives = 96/143 (67.13%), Query Frame = 0

Query: 52  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADS 111
           V+YIG IP   +E ++  +F QFG V RLR++R+KKTG S+ + Y+EFE  EVAKIVAD+
Sbjct: 42  VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101

Query: 112 MHNYLLYEHILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVE 171
           M+NYL  E +LK   +PPE VHP+L+ G   +++      + R  +NK R+ +E +K+ +
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 161

Query: 172 RILKRDQARQKRIRAAGIEYECP 195
           R+L ++   +KR+   GI+Y+ P
Sbjct: 162 RMLSKENKVRKRLAEKGIDYDFP 182

BLAST of MS009125 vs. ExPASy Swiss-Prot
Match: Q3SZM1 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=NIFK PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-28
Identity = 70/191 (36.65%), Postives = 118/191 (61.78%), Query Frame = 0

Query: 16  ATSLLS-EKKESADFLPLVGGPGRKLPAQKPLEN-TATVLYIGRIPHGFFEKEMEGFFGQ 75
           A  LLS   +E A F   V    R+   Q+  +  T  V+Y+G +P   +E ++  +F Q
Sbjct: 8   AKPLLSLNPQEDAKFKKEVAQVRRRATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQ 67

Query: 76  FGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEHILKVHLIPPEHVH 135
           FG V R R++R+KKTG S+ +G++EFES +VAKI A++M+NYL  E +LK H IPPE VH
Sbjct: 68  FGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVH 127

Query: 136 PKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQARQKRIRAAGIEYEC 195
            +L++ ++  +K  +   +  K++N+ R+L +  ++ ER  K+++  +KR+   GI+Y  
Sbjct: 128 EELFREWHMPFKRPSYPAV--KRYNQNRSLVQKLRMEERFKKKEKLLRKRLAKKGIDYNF 187

Query: 196 PEIVRIYFFSE 205
           P +V++   +E
Sbjct: 188 PSLVKVLHKNE 196

BLAST of MS009125 vs. ExPASy Swiss-Prot
Match: Q7SYS2 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=8355 GN=nifk PE=2 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-27
Identity = 73/187 (39.04%), Postives = 113/187 (60.43%), Query Frame = 0

Query: 9   MKKKLNKATSLLS-EKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPHGFFEKEM 68
           M ++L ++  LLS + K   DF   V    RK   +K    T  V+YIG IP    E ++
Sbjct: 1   MAEELVQSEKLLSLDPKLQEDFQQKVHDIRRK---RKANALTPGVIYIGHIPKSLIEPQL 60

Query: 69  EGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEHILKVHLI 128
           + +F QFG V RLR++R+KKTG S+ + Y+E+E  EVAKIVAD+M+NYL  E +LK   +
Sbjct: 61  QEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFV 120

Query: 129 PPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQARQKRIRAA 188
            PE VHP+L+ G N R++      + R  +N +R   E +K+ +R++ ++   +KR+   
Sbjct: 121 TPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQRMISKEYKLRKRLAEK 180

Query: 189 GIEYECP 195
           GI+Y+ P
Sbjct: 181 GIDYDFP 182

BLAST of MS009125 vs. ExPASy TrEMBL
Match: A0A6J1BYN0 (uncharacterized RNA-binding protein C1827.05c OS=Momordica charantia OX=3673 GN=LOC111006666 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.1e-105
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR
Sbjct: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           QKRIRAAGIEYECPEIV
Sbjct: 181 QKRIRAAGIEYECPEIV 197

BLAST of MS009125 vs. ExPASy TrEMBL
Match: A0A6J1JZE0 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111489660 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.2e-97
Identity = 181/197 (91.88%), Postives = 191/197 (96.95%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKL+KATS LS+KKESADFLPL GGPGRKLPAQKPLENTATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARN+KTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           +LKVHLI PEHVHPKLWKGFNYR+KPL+  ELERKQHNKERTL EH+KLVERILKRDQAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           +KRIRAAGI+YECPEIV
Sbjct: 181 KKRIRAAGIDYECPEIV 197

BLAST of MS009125 vs. ExPASy TrEMBL
Match: A0A5D3CMU5 (Putative RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00640 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.2e-97
Identity = 182/202 (90.10%), Postives = 190/202 (94.06%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKL KAT L S+KKESADFLPL GGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYR+ PLN  ELERKQHNKERTL EH+KLV+RILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIEYECPEIVRIYFF 203
           QKRIRAAGI+YECPEIVR + F
Sbjct: 181 QKRIRAAGIDYECPEIVRRFLF 202

BLAST of MS009125 vs. ExPASy TrEMBL
Match: A0A6J1E350 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662 GN=LOC111430401 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.2e-97
Identity = 183/197 (92.89%), Postives = 189/197 (95.94%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKLNKATSLLS KKESADFLPL GGPGRKLPAQKPLE+TATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYR+ PLN  ELERK+HNKERTL EHRKLVERILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           QKRIRAAGI+YECPEIV
Sbjct: 181 QKRIRAAGIDYECPEIV 197

BLAST of MS009125 vs. ExPASy TrEMBL
Match: A0A1S3C4U7 (uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC103496493 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.1e-96
Identity = 180/197 (91.37%), Postives = 187/197 (94.92%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEKKESADFLPLVGGPGRKLPAQKPLENTATVLYIGRIPH 60
           MGAKAKKAMKKKL KAT L S+KKESADFLPL GGPGRKLP QKPLE+TATVLYIGRIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGY+EFESPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVERILKRDQAR 180
           ILKVHLI PEHVHPKLWKGFNYR+ PLN  ELERKQHNKERTL EH+KLV+RILKRDQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIEYECPEIV 198
           QKRIRAAGI+YECPEIV
Sbjct: 181 QKRIRAAGIDYECPEIV 197

BLAST of MS009125 vs. TAIR 10
Match: AT5G04600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-68
Identity = 128/206 (62.14%), Postives = 161/206 (78.16%), Query Frame = 0

Query: 1   MGAKAKKAMKKKLNKATSLLSEK--------KESADFLPLVGGPGRKLP-AQKPLENTAT 60
           MGAKAKKA+KK + K  +  S          K SADFLPL GGP RK P    PL+N AT
Sbjct: 1   MGAKAKKALKKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKAT 60

Query: 61  VLYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADS 120
           VLYIGRIPHGF+E E+E FF QFG VKR+R+ARNKKTGKS+HFG+I+FE PEVA+I A +
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 121 MHNYLLYEHILKVHLIPPEHVHPKLWKGFNYRYKPLNLFELERKQHNKERTLSEHRKLVE 180
           M++YLL EH+LKVH+I PE+V P LW+GF   +KP++  ++ER+Q NKERTL EHRK+++
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 181 RILKRDQARQKRIRAAGIEYECPEIV 198
           +I+K+DQ R+KRI AAGIEYECPE+V
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYECPELV 206

BLAST of MS009125 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-06
Identity = 31/110 (28.18%), Postives = 53/110 (48.18%), Query Frame = 0

Query: 41  PAQKPLENTATV--LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIE 100
           P ++ +E+ + +  L+IG I     E+ ++ +FG++G +    I R++ TG++R FG+I 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 101 FESPEVAKIVADSMH-----------------NYLLYEHILKVHLIPPEH 132
           F  P VA+ V    H                   +L  H   +HLI P H
Sbjct: 63  FADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112

BLAST of MS009125 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-06
Identity = 31/97 (31.96%), Postives = 49/97 (50.52%), Query Frame = 0

Query: 31  PLVGGPGRKLPAQKPLENTATV-LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTG 90
           P +   G  +P+    E  A   L+I  IP  F ++E+   F  FGKV   ++  +K TG
Sbjct: 309 PGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATG 368

Query: 91  KSRHFGYIEFESPEVAKIVADSMHNYLLYEHILKVHL 127
            S+ FG+I ++S   A+   ++M+   L    LKV L
Sbjct: 369 ISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405

BLAST of MS009125 vs. TAIR 10
Match: AT1G03457.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-06
Identity = 31/97 (31.96%), Postives = 49/97 (50.52%), Query Frame = 0

Query: 31  PLVGGPGRKLPAQKPLENTATV-LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTG 90
           P +   G  +P+    E  A   L+I  IP  F ++E+   F  FGKV   ++  +K TG
Sbjct: 318 PGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATG 377

Query: 91  KSRHFGYIEFESPEVAKIVADSMHNYLLYEHILKVHL 127
            S+ FG+I ++S   A+   ++M+   L    LKV L
Sbjct: 378 ISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414

BLAST of MS009125 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-06
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 53  LYIGRIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADSM 112
           L+IG I     E+ ++ +F  FG+V    I +++ TG++R FG++ F  P VA+IV    
Sbjct: 8   LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67

Query: 113 HN 115
           HN
Sbjct: 68  HN 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022134394.12.3e-105100.00uncharacterized RNA-binding protein C1827.05c [Momordica charantia][more]
XP_022993750.16.7e-9791.88uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima][more]
TYK11746.18.7e-9790.10putative RNA-binding protein [Cucumis melo var. makuwa][more]
XP_022922397.11.5e-9692.89uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata][more]
KAG6602267.19.6e-9691.88MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein, partial [Cuc... [more]
Match NameE-valueIdentityDescription
O749783.3e-3041.29Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (stra... [more]
Q8JIY88.1e-2945.45MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=... [more]
Q6GL691.4e-2843.36MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis... [more]
Q3SZM14.0e-2836.65MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=N... [more]
Q7SYS22.0e-2739.04MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=... [more]
Match NameE-valueIdentityDescription
A0A6J1BYN01.1e-105100.00uncharacterized RNA-binding protein C1827.05c OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1JZE03.2e-9791.88uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 G... [more]
A0A5D3CMU54.2e-9790.10Putative RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1E3507.2e-9792.89uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662... [more]
A0A1S3C4U76.1e-9691.37uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC1034... [more]
Match NameE-valueIdentityDescription
AT5G04600.12.4e-6862.14RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G26650.12.0e-0628.18RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G03457.13.4e-0631.96RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G03457.23.4e-0631.96RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G07810.14.4e-0637.10RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availablePANTHERPTHR46754:SF9SUBFAMILY NOT NAMEDcoord: 1..198
NoneNo IPR availablePANTHERPTHR46754MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEINcoord: 1..198
NoneNo IPR availableCDDcd12307RRM_NIFK_likecoord: 52..125
e-value: 4.68857E-42
score: 135.01
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 52..125
e-value: 1.5E-19
score: 81.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 53..120
e-value: 2.7E-13
score: 49.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 51..129
score: 14.777537
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..126
e-value: 2.7E-21
score: 77.8
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 38..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009125.1MS009125.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding